[Gate-users] Building gate_v6.0_p01

Fri Oct 15 15:25:09 CEST 2010

Hi Alexandre-

Thanks for your help.

I tried what you suggested ( run the make command twice in a row ) but
got the same result. See below.

Trillian gate_v6.0_p01]$ make
Entering source/arf ...
source/arf finished
Entering source/geometry ...
source/geometry finished
Entering source/general ...
source/general finished
Entering source/digits_hits ...
source/digits_hits finished
Entering source/physics ...
source/physics finished
[Trillian gate_v6.0_p01]$ make
Entering source/arf ...
source/arf finished
Entering source/geometry ...
source/geometry finished
Entering source/general ...
source/general finished
Entering source/digits_hits ...
source/digits_hits finished
Entering source/physics ...
source/physics finished
[Trillian gate_v6.0_p01]$

It is still not entering the linking stage.

On Fri, Oct 15, 2010 at 3:25 AM, Alexandre Dupas
<alexandre.dupas at gmail.com> wrote:
> Dear Andinet,
>
> In your settings, the Gate makefile do not enter the linking stage. I
> had a quite similar issue with Gate 5 and since the makefiles are
> similar, my workaround should work.
>
> Try to run the make command twice in a row. In the first pass, you
> should see all the "Entering dir/dir finished" lines and at the end of
> the second run, you should see something like "linking Gate/linking
> done".
>
> The issue, in Gate 5, comes from a missing dependency between the
> library building and the processing of the subdirs. On mono-thread
> compilation, this is not an issue since the declaration order is also
> the processing order. The linking is done when all the subdirs are
> done but using "make -j4" for instance does not work the same way
> since the jobs are processed simultaneously and the object files
> required to produce executable and library are not available.
>
> Your environment setup appears to be ok.
>
> Cheers,
> Alexandre
>
> --
> Alexandre Dupas
> Postdoctoral Research Fellow
> INSERM U698, Bichat Médecine Nucléaire
>
> 2010/10/15 Andinet Enquobahrie <andinet.enqu at kitware.com>:
>> Hi all-
>>
>> I am trying to build gate_v6.0_p01 on my Linux machine. I am using the
>> following version of the helper softwares as recommended in the README
>> file
>>
>> - GEATN 4.9.1 patch 03
>> - CLHEP 2.0.3.2
>>  - ROOT v5.27.04
>>
>> I built and installed GEATN, CLHEP and ROOT succesfully as described in
>>
>> http://wiki.opengatecollaboration.org/index.php/InstallationGuide
>>
>> I had no problems.
>>
>> But, when I built gate , it is not generating the Gate executable.
>> Here is how a make run looks like
>>
>>  > make
>> Entering source/arf ...
>> source/arf finished
>> Entering source/geometry ...
>> source/geometry finished
>> Entering source/general ...
>> source/general finished
>> Entering source/digits_hits ...
>> source/digits_hits finished
>> Entering source/physics ...
>> source/physics finished
>>
>> I don't get Gate executable in  my
>>
>> ${GATEHOME}/bin/${G4SYSTEM}
>>
>>
>> My environment setup looks like the following.
>>
>> ./env_gate.sh
>>
>> The current value of G4INSTALL is: /home/andinet/Projects/GEANT/geant4.9.1.p03
>> The current value of G4VERSION is: 9.1
>>
>> Launching Geant4 configuration script
>> /home/andinet/Projects/GEANT/geant4.9.1.p03/env.sh
>>
>> On this machine the G4SYSTEM=Linux-g++
>> On this machine the G4INSTALL=/home/andinet/Projects/GEANT/geant4.9.1.p03
>> On this machine the
>> G4INCLUDE=/home/andinet/Projects/GEANT/geant4.9.1.p03/include/
>> On this machine the G4LIB=/home/andinet/Projects/GEANT/geant4.9.1.p03/lib
>> On this machine the
>> G4LEVELGAMMADATA=/home/andinet/Projects/GEANT/geant4.9.1.p03/data/PhotonEvaporation2.0
>> On this machine the
>> G4RADIOACTIVEDATA=/home/andinet/Projects/GEANT/geant4.9.1.p03/data/RadioactiveDecay3.2
>> On this machine the
>> G4LEDATA=/home/andinet/Projects/GEANT/geant4.9.1.p03/data/G4EMLOW5.1
>> On this machine the
>> G4NEUTRONHPDATA=/home/andinet/Projects/GEANT/geant4.9.1.p03/data/G4NDL3.12
>> On this machine the
>> G4ABLADATA=/home/andinet/Projects/GEANT/geant4.9.1.p03/data/G4ABLA3.0
>> On this machine the CLHEP_BASE_DIR=/home/andinet/Projects/CLHEP
>> On this machine the CLHEP_INCLUDE_DIR=/home/andinet/Projects/CLHEP/include
>> On this machine the CLHEP_LIB_DIR=/home/andinet/Projects/CLHEP/lib
>> On this machine the CLHEP_LIB=CLHEP
>> On this machine the XMFLAGS=
>> On this machine the XMLIBS=
>> On this machine the XMFLAGS=
>> On this machine the XAWFLAGS=
>> On this machine the XAWLIBS=
>> On this machine the G4LIB_BUILD_STATIC=1
>> On this machine the G4LIB_USE_GRANULAR=1
>> On this machine the G4UI_USE_TCSH=1
>>
>> Configuring GATE options
>>
>> G4WORKDIR set to /home/andinet/Projects/GATE/gate_v6.0_p01
>> G4TMP set to /home/andinet/Projects/GATE/gate_v6.0_p01/tmp
>> G4BIN set to /home/andinet/Projects/GATE/gate_v6.0_p01/bin
>> Data analysis and output features enabled
>> Ascii data output enabled
>> Transport and generation of optical photons is disabled
>> Checking your LD_LIBRARY_PATH variable...
>>  ==> OK: /home/andinet/Projects/ROOT//lib is already in your LD_LIBRARY_PATH
>> Use of ROOT enabled
>> ROOT real-time plotter disabled
>> LMF data output disabled
>> ECAT7 data output disabled
>> GATEHOME is set to /home/andinet/Projects/GATE/gate_v6.0_p01
>> Checking your path variable...
>>  ==> OK: /home/andinet/Projects/GATE/gate_v6.0_p01/bin/Linux-g++ added
>> to your path variable
>> Checking your LD_LIBRARY_PATH variable...
>>  ==> OK: /home/andinet/Projects/GATE/gate_v6.0_p01/tmp/Linux-g++/Gate
>> added to your path variable
>> G4VERSION9_2 is not set
>> This GATE version only works with Geant4.9.1
>> Done
>>
>>
>> Can anybody let me know what is wrong in my env't set up? I appreciate your help
>>
>> Thanks,
>> Andinet
>>
>>
>> --
>> Andinet Enquobahrie, Ph.D.
>> Technical Lead
>> Kitware, Inc.
>>
>> http://www.kitware.com
>> (919) 969-6990 x311
>> _______________________________________________
>> Gate-users mailing list
>> Gate-users at lists.opengatecollaboration.org
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>>
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-- 
Andinet Enquobahrie, Ph.D.
Technical Lead
Kitware, Inc.

http://www.kitware.com
(919) 969-6990 x311