[Gate-users] Moby phantom

[AliAsghar Parach]

Dear adibpour
1-parameterizedBoxMatrix is not implemented in GATE6 and you should use
regular or compressedMatrix instead.
2- you should define your complete Materials.db path in your macro.

hope this help you.

On Sun, May 30, 2010 at 12:21 PM, adibpour <adibpour at razi.tums.ac.ir> wrote:

>  *Hi,*
>
> *Thanks for your help.I've carried out some changes that you mentioned,but
> after this command(* /gate/moby/interfileReader/readFile moby.h33
> *) i still had this error*
>
> ERROR - G4Box()::G4Box():
> > Dimensions too small ! - 0, 0, 0
>
> after inserting
>
> instead of
>
> *On Sat, 29 May 2010 22:41:05 +0430, AliAsghar Parach wrote*
>  > I think you have a few mistakes in your sent files; as below:
> > 1-in your moby.h33 change 1 to 3. !maximum pixel count := +1
> > 2- change centre-centre slice separation (pixels) := +0.000+00 to 0.8
> > 3- you defined visulisation commands in your main.mac file and but you
> disabled your visulisation in moby.mac file it seems wrong.
> > 4- you should disable /gate/geometry/enableAutoUpdate in moby.mac file. i
> think this command is by rebuild command that you used in your macros.
> > 5- if you used gate_6 some commands is changed in gate_6 compare with
> previous versions, such as physics definition , ....
> >
> > hope this help you.
> >
> > On Sat, May 29, 2010 at 5:51 PM, adibpour <adibpour at razi.tums.ac.ir>wrote:
> >
>
>   Dear gate-users,
>> > I'm trying to implement Moby phantom in gate.
>> > When i enter the commands line by line,after this command
>> >
>> > /gate/moby/interfileReader/readFile moby.i33
>> >
>> > i encounter this erchangror:
>> >
>> >  *** Break *** segmentation violation
>> >  0x033f0994 in _IO_vfscanf + 0x2904 from /lib/tls/i686/cmov/libc.so.6
>> >  0x033f4453 in vfscanf + 0x33 from /lib/tls/i686/cmov/libc.so.6
>> >  0x033f449f in fscanf + 0x1f from /lib/tls/i686/cmov/libc.so.6
>> >  0x00556a5b in _ZN32GateGeometryVoxelInterfileReader7ReadKeyEP8_IO_FILE
>> +
>> > 0x5b
>> > from /home/gate/Progs/Gate/gate_v6.0_p01/tmp/Linux-g++/Gate/libGate.so
>> >
>> > and when i run the moby.mac file  ,the problem below occurs:
>> >
>> > ERROR - G4Box()::G4Box():
>> > Dimensions too small ! - 0, 0, 0
>> >
>> > I have enclsed all my files in attachment.
>> > any help would be appreciated.
>> >
>> > Best Regards
>> > --
>> > Farzaneh Adibpour
>> >
>> > MSc Student, Department of Medical physics and Biomedical
>> Engineering,Tehran
>> > University of Medical Sciences
>> > Member of Medical Imaging Systems Research Group, Research Center for
>> > Science
>> > and Technology in Medicine
>> > Email: adibpour at razi.tums.ac.ir
>> >       f.adibpour at gmail.com
>> >
>> > Cell phone:+989123679749
>> >
>> >
>> > --
>> > This message has been scanned for viruses and
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>> > believed to be clean.
>> >
>> >
>> > _______________________________________________
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>> > Gate-users at lists.opengatecollaboration.org
>> > http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>> >
>
>
> >
>
> > --
> > Ali Asghar Parach,Ph.D. student in Medical Physics,Tarbiat Modares
> University,Tehran,Iran
> >
> > --
> > This message has been scanned for viruses and
> > dangerous content by *MailScanner* <http://www.mailscanner.info/>, and
> is
> > believed to be clean.
>
>
> --
> Farzaneh Adibpour
>
> MSc Student, Department of Medical physics and Biomedical
> Engineering,Tehran
> University of Medical Sciences
> Member of Medical Imaging Systems Research Group, Research Center for
> Science
> and Technology in Medicine
> Email: adibpour at razi.tums.ac.ir
>       f.adibpour at gmail.com
>
> Cell phone:+989123679749
>
>  /gate/world/daughters/insert parameterizedBoxMatrix
>
>
>
> /gate/world/daughters/insert regularMatrix
>
> this error will be appeared:
>
> '!ror: Could not open header file 'moby.i33
> Idle> /gate/geometry/rebuild
> G4PhysicalVolumeModel::Validate() called.
>  Volume of the same name and copy number ("world_phys", copy 0) still
> exists
> and is being used.
>  WARNING: This does not necessarily guarantee it's the same
>  volume you originally specified in /vis/scene/add/.
>
> Please find the attachment.
>
> any help will be highly appreciated.
>
>
> --
> This message has been scanned for viruses and
> dangerous content by *MailScanner* <http://www.mailscanner.info/>, and is
> believed to be clean.
>



-- 
Ali Asghar Parach,Ph.D. student in Medical Physics,Tarbiat Modares
University,Tehran,Iran