[Gate-users] Fw:Re:Re: What's the final solution about Hon Yu's Compilation error problem?
zhb_zzu_edu
zhb_zzu_edu at 163.com
Tue May 25 12:33:37 CEST 2010
---------- 转发邮件信息 ----------
发件人:"zhb_zzu_edu <zhb_zzu_edu at 163.com>"
发送日期:2010-05-25 18:30:40
收件人:hjyu at uci.edu
主题: Re:Re: [Gate-users] What's the final solution about Hon Yu's Compilation error problem?
thanks you,
Hon Yu
According to your direction, the complication seems successful. But Gate cann't run!!!
My software versions are different from yours. Because i carefully study the vGate, adopting it's configure.
software version
------------------------------------------------------
CLHEP 2.0.4.2
Geant4.9.2_p03
ROOT_v5.26
Gate6.0_p01
------------------------------------------------------
environment variables set
---------------------------------------------------------------------------------
export GATEHOME=/home/zhb/GATE/gate_v6.0_p01
export G4INSTALL=/home/zhb/GATE/geant4.9.2.p03
export G4VERSION=9.2
export ROOTSYS=/home/zhb/GATE/root
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$ROOTSYS/lib:/home/zhb/GATE/2.0.4.2/lib
export PATH=$PATH:$ROOTSYS/lib:$ROOTSYSE/bin:$GATEHOME/bin/$G4SYSTEM
export G4ANALYSIS_USE_GENERAL=1
export G4_USE_G4BESTUNIT_FOR_VERBOSE=1
export G4ANALYSIS_USE_ROOT=1
--------------------------------------------------------------------------------------------
final information about compilation
...............................................
Using granular libraries ...
Linking Gate
... Done!
...................................................
But there is running error information,Gate cann't run!!!
------------------------------------------------------------
Gate: error while loading shared libraries: libG4error_propagation.so: cannot open shared object file: No such file or directory
--------------------------------------------------------------------------------------------
please help me! Give some direction!
在2010-05-25 03:19:58,"Hon Yu" <hjyu at uci.edu> 写道:
>Hi,
>
>Following are the installed packages:
>
>CLHEP 2.0.3.2
>Geant4.9.1_p03
>ROOT_v5.26
>Gate6.0_p01
>
>The only exceptions/omissions to the wiki version of 'InstallationGuide'
>that I have noted are
>(http://wiki.opengatecollaboration.org/index.php/Main_Page):
>
>1. Geant4: You'd need to generate the 'shared' libraries (.so) - default
>is [no].
>
>2. ROOT: you'd need to create a /root sub-folder under /lib and /include,
>respectively, and copy all 'library' and '*.h' files into it as
>compilation of 'Gate' will look for the relevant 'ROOT' files under
>/root/lib/root and /root/include/root rather than /root/lib and
>/root/include, respectively (I suspect this could be perhaps fixed by
>altering "LIBDIR" and "INCDIR" paths in 'Makefile.config' file under
>/root/config folder, but have not tried it).
>
>3. "env_gate.sh" file for Gate:
>PATH=$PATH:$ROOTSYS/bin:$GATEHOME/bin$G4SYSTEM (the document has as
>$ROOTSYS/lib instead).
>
>Hope this helps.
>
>Hon
>
>>
>>
>>
>>
>>
>>Hi,
>>>
>>>I am having the same problem as what Sebnem described during the
>>>compilation of GATE in a Linux machine (Red Hat/gcc 4.1.2). I gather
>>> that
>>>it's likely to do w/ ROOT as all missing "T***.h" files are located under
>>>~/GATE_ROOT/root/include; however, I'm not sure what environmental
>>> setting
>>>is the cause as I have followed the steps described in the latest
>>>'InstallationGuide - GATE collaborative documentation wiki' to the
>>>letters.
>>>
>>>My "env_gate.sh" contains following environment variables:
>>>
>>>export GATEHOME=~/GATE_ROOT/gate_v5.0.0_p01
>>>export G4INSTALL=~/GATE_ROOT/geant4.9.1.p03
>>>export G4VERSION=9.1
>>>export ROOTSYS=~/GATE_ROOT/root
>>>
>>>export
>>> LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$ROOTSYS/lib:~/GATE_ROOT/2.0.3.2/lib
>>>
>>>export PATH=$PATH:$ROOTSYS/bin:$GATEHOME/bin/$G4SYSTEM
>>>
>>>Also, the installation of CLHEP (v2.0.3.2), Geant4 (v9.1.p03) , and ROOT
>>>(v5.26) was successfull by all indications prior to GATE installation.
>>>
>>>I'd greatly appreciate any suggestions any of you might have.
>>>
>>>Cordially,
>>>
>>>Hon
>>>
>>>
>--
>**********************************
>Hon Yu, Ph.D.
>
>Research Imaging Center /
>Center for Functional Onco Imaging
>132 Irvine Hall
>Irvine, CA 92697-5020
>phone:(949)824-6001/5479
>fax:(949)824-3481
>email:hjyu at uci.edu
>**********************************
>
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