[Gate-users] Problem making gate 4

Mon Mar 15 14:54:57 CET 2010

Thank for your answer.

I have placed the needed libaries in the lib directory of root. However now
I got the following linker errors:

Linking Gate ...
/opt/simu/root/lib/libRIO.so: undefined reference to
`TClass::Streamer(void*, TBuffer&, TClass const*) const'
/opt/simu/root/lib/libRIO.so: undefined reference to
`ROOT::TSchemaRule::HasTarget(TString const&) const'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::FindObject(TObject const*) const'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraphErrors::~TGraphErrors()'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TClass::New(TClass::ENewType) const'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::DrawGraph(int, double const*, double const*, char const*)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::GetErrorXhigh(int) const'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TVirtualStreamerInfo::GetElementCounter(char const*, TClass*)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::ComputeRange(double&, double&, double&, double&) const'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::SetMinimum(double)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraphErrors::GetErrorYlow(int) const'
/opt/simu/root/lib/libGpad.so: undefined reference to
`TApplication::NeedGraphicsLibs()'
/opt/simu/root/lib/libRint.so: undefined reference to
`TApplication::LineProcessed(char const*)'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TVirtualStreamerInfo::TVirtualStreamerInfo()'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::SavePrimitive(std::basic_ostream<char, std::char_traits<char> >&,
char const*)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraphErrors::TGraphErrors(int, double const*, double const*, double
const*, double const*)'
/opt/simu/root/lib/libGpad.so: undefined reference to `TGraph::TGraph()'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TVersionCheck::TVersionCheck(int)'
/opt/simu/root/lib/libRIO.so: undefined reference to `TClass::NewArray(long,
void*, TClass::ENewType) const'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::SetMaximum(double)'
/opt/simu/root/lib/libRIO.so: undefined reference to `TString::Clear()'
/opt/simu/root/lib/libGpad.so: undefined reference to
`TVirtualPadPainter::InitPainter()'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TDirectory::UnregisterContext(TDirectory::TContext*)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::Merge(TCollection*)'
/opt/simu/root/lib/libGraf.so: undefined reference to `typeinfo for TGraph'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraphErrors::ShowMembers(TMemberInspector&, char*)'
/opt/simu/root/lib/libGpad.so: undefined reference to `gPluginMgr'
/opt/simu/root/lib/libGpad.so: undefined reference to
`TGraph::GetHistogram() const'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TStreamerArtificial::GetReadRawFunc()'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::SwapPoints(int, int)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraphErrors::GetErrorYhigh(int) const'
/opt/simu/root/lib/libRint.so: undefined reference to
`TFunction::TFunction(void*)'
/opt/simu/root/lib/libRint.so: undefined reference to `Gl_setColors'
/opt/simu/root/lib/libGraf.so: undefined reference to `TGraph::~TGraph()'
/opt/simu/root/lib/libRIO.so: undefined reference to `TString::Hash(void
const*, int)'
/opt/simu/root/lib/libGpad.so: undefined reference to `TClass::TClass(char
const*, short, std::type_info const&, TVirtualIsAProxy*, void (*)(void*,
TMemberInspector&, char*), char const*, char const*, int, int, bool)'
/opt/simu/root/lib/libRIO.so: undefined reference to `TProcessID::GetPID()'
/opt/simu/root/lib/libGraf.so: undefined reference to `TGraph::GetMean(int)
const'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::InitExpo(double, double)'
/opt/simu/root/lib/libRIO.so: undefined reference to `TClass::NewArray(long,
TClass::ENewType) const'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TClass::SetCurrentStreamerInfo(TVirtualStreamerInfo*)'
/opt/simu/root/lib/libGraf.so: undefined reference to `TGraph::Print(char
const*) const'
/opt/simu/root/lib/libRIO.so: undefined reference to
`ROOT::TSchemaRule::GetReadRawFunctionPointer() const'
/opt/simu/root/lib/libRIO.so: undefined reference to
`ROOT::TSchemaRule::IsAliasRule() const'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TClass::GetConversionStreamerInfo(TClass const*, int) const'
/opt/simu/root/lib/libRIO.so: undefined reference to `TClass::Move(void*,
void*) const'
/opt/simu/root/lib/libGraf.so: undefined reference to `TGraph::Paint(char
const*)'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TVirtualStreamerInfo::GetStreamMemberWise()'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraphErrors::SavePrimitive(std::basic_ostream<char, std::char_traits<char>
>&, char const*)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraphErrors::SetPointError(int, double, double)'
/opt/simu/root/lib/libRint.so: undefined reference to
`TApplication::ProcessFile(char const*, int*, bool)'
/opt/simu/root/lib/libRIO.so: undefined reference to
`ROOT::TSchemaRuleSet::HasRuleWithSourceClass(TString const&) const'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::RecursiveRemove(TObject*)'
/opt/simu/root/lib/libGraf.so: undefined reference to `TGraph::DrawPanel()'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::LeastSquareFit(int, double*, double, double)'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TClass::CallShowMembers(void*, TMemberInspector&, char*, int) const'
/opt/simu/root/lib/libRIO.so: undefined reference to `vtable for
TStreamerArtificial'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::InitGaus(double, double)'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TDirectory::CleanTargets()'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TVirtualStreamerInfo::~TVirtualStreamerInfo()'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraphErrors::CopyPoints(double**, int, int, int)'
/opt/simu/root/lib/libRIO.so: undefined reference to `TROOT::GetClass(char
const*, bool, bool) const'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraphErrors::TGraphErrors(TGraphErrors const&)'
/opt/simu/root/lib/libGpad.so: undefined reference to `TGraph::TGraph(int)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::FindObject(char const*) const'
/opt/simu/root/lib/libRint.so: undefined reference to `TApplication::ls(char
const*) const'
/opt/simu/root/lib/libGraf.so: undefined reference to `TGraph::Expand(int,
int)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::CopyAndRelease(double**, int, int, int)'
/opt/simu/root/lib/libRIO.so: undefined reference to
`ROOT::TSchemaRuleSet::FindRules(TString const&, int, unsigned int) const'
/opt/simu/root/lib/libRIO.so: undefined reference to
`ROOT::TSchemaRuleSet::FindRules(TString const&, int) const'
/opt/simu/root/lib/libMathCore.so: undefined reference to
`ROOT::TGenericClassInfo::AdoptCollectionProxyInfo(ROOT::TCollectionProxyInfo*)'
/opt/simu/root/lib/libGpad.so: undefined reference to
`TVirtualPadPainter::ShowMembers(TMemberInspector&, char*)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::CtorAllocate()'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::GetErrorYlow(int) const'
/opt/simu/root/lib/libGraf.so: undefined reference to `TGraph::Integral(int,
int) const'
/opt/simu/root/lib/libGraf.so: undefined reference to `TGraph::SetPoint(int,
double, double)'
/opt/simu/root/lib/libGpad.so: undefined reference to
`TVirtualPadPainter::PadPainter(char const*)'
/opt/simu/root/lib/libRint.so: undefined reference to `gCint'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TVirtualStreamerInfo::ShowMembers(TMemberInspector&, char*)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`G__get_linked_tagnum_fwd'
/opt/simu/root/lib/libGraf.so: undefined reference to `TGraph::Eval(double,
TSpline*, char const*) const'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TStreamerArtificial::GetReadFunc()'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::RemovePoint()'
/opt/simu/root/lib/libRIO.so: undefined reference to
`ROOT::TSchemaMatch::GetRuleWithSource(TString const&) const'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraphErrors::SwapPoints(int, int)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraphErrors::FillZero(int, int, bool)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::GetErrorXlow(int) const'
/opt/simu/root/lib/libGraf.so: undefined reference to `TGraph::GetPoint(int,
double&, double&) const'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TClass::GetSchemaRules(bool)'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TVirtualStreamerInfo::TVirtualStreamerInfo(TClass*)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::Browse(TBrowser*)'
/opt/simu/root/lib/libGraf.so: undefined reference to `TGraph::TGraph(TGraph
const&)'
/opt/simu/root/lib/libRIO.so: undefined reference to `TExMap::AddAt(unsigned
int, unsigned long long, long long, long long)'
/opt/simu/root/lib/libGraf3d.so: undefined reference to
`TRefArray::TRefArray(TProcessID*)'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TProcessID::GetProcessWithUID(unsigned int, void const*)'
/opt/simu/root/lib/libGpad.so: undefined reference to
`TClass::BuildRealData(void*, bool)'
/opt/simu/root/lib/libGraf.so: undefined reference to `TGraph::Draw(char
const*)'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TExMap::GetValue(unsigned long long, long long)'
/opt/simu/root/lib/libGpad.so: undefined reference to
`TVirtualPadPainter::~TVirtualPadPainter()'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraphErrors::TGraphErrors()'
/opt/simu/root/lib/libRint.so: undefined reference to `TROOT::GetSvnDate()'
/opt/simu/root/lib/libGraf.so: undefined reference to `TGraph::Fit(TF1*,
char const*, char const*, double, double)'
/opt/simu/root/lib/libGraf.so: undefined reference to `TGraph::FillZero(int,
int, bool)'
/opt/simu/root/lib/libGraf.so: undefined reference to `TGraph::Expand(int)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraphErrors::SetPointError(double, double)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraphErrors::Print(char const*) const'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::RemovePoint(int)'
/opt/simu/root/lib/libRIO.so: undefined reference to `TClass::TClass(char
const*, short, char const*, char const*, int, int, bool)'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TDirectory::Remove(TObject*)'
/opt/simu/root/lib/libRIO.so: undefined reference to
`ROOT::TSchemaRule::GetTarget() const'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraphErrors::GetErrorXlow(int) const'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::CopyPoints(double**, int, int, int)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::DrawGraph(int, float const*, float const*, char const*)'
/opt/simu/root/lib/libRint.so: undefined reference to
`TApplication::HandleException(int)'
/opt/simu/root/lib/libRIO.so: undefined reference to `TClass::New(void*,
TClass::ENewType) const'
/opt/simu/root/lib/libRint.so: undefined reference to
`TGlobal::TGlobal(void*)'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TExMap::GetValue(unsigned long long, long long, unsigned int&)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::GetCorrelationFactor() const'
/opt/simu/root/lib/libGpad.so: undefined reference to
`TVirtualPadPainter::InvalidateCS()'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::PaintStats(TF1*)'
/opt/simu/root/lib/libGraf.so: undefined reference to `TGraph::Set(int)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::LeastSquareLinearFit(int, double&, double&, int&, double, double)'
/opt/simu/root/lib/libGpad.so: undefined reference to
`TMultiGraph::GetHistogram() const'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::GetErrorX(int) const'
/opt/simu/root/lib/libRIO.so: undefined reference to
`ROOT::TSchemaMatch::HasRuleWithSource(TString const&) const'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::ShowMembers(TMemberInspector&, char*)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TColor::GetColorDark(int)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraphErrors::ComputeRange(double&, double&, double&, double&) const'
/opt/simu/root/lib/libGpad.so: undefined reference to
`TAttPad::SetMargin(float, float, float, float)'
/opt/simu/root/lib/libGraf.so: undefined reference to `TGraph::TGraph(int,
double const*, double const*)'
/opt/simu/root/lib/libGraf.so: undefined reference to `TGraph::Fit(char
const*, char const*, char const*, double, double)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraphErrors::operator=(TGraphErrors const&)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraphErrors::CopyAndRelease(double**, int, int, int)'
/opt/simu/root/lib/libRint.so: undefined reference to `TClass::TClass(char
const*, bool)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::GetErrorYhigh(int) const'
/opt/simu/root/lib/libGraf.so: undefined reference to `TGraph::Chisquare(TF1
const*) const'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraphErrors::GetErrorXhigh(int) const'
/opt/simu/root/lib/libGraf.so: undefined reference to `TClass::GetClass(char
const*, bool, bool)'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TBuffer::TBuffer(TBuffer::EMode, int, void*, bool, char* (*)(char*,
unsigned int, unsigned int))'
/opt/simu/root/lib/libGpad.so: undefined reference to
`TVirtualPadPainter::LockPainter()'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TDirectory::Append(TObject*, bool)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::AllocateArrays(int, int)'
/opt/simu/root/lib/libGraf.so: undefined reference to `TGraph::Sort(bool
(*)(TGraph const*, int, int), bool, int, int)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraphErrors::GetErrorX(int) const'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraphErrors::GetErrorY(int) const'
/opt/simu/root/lib/libRIO.so: undefined reference to
`ROOT::TSchemaRule::GetReadFunctionPointer() const'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TClass::GetDirectoryAutoAdd() const'
/opt/simu/root/lib/libGraf.so: undefined reference to `typeinfo for
TGraphErrors'
/opt/simu/root/lib/libRIO.so: undefined reference to
`ROOT::TSchemaMatch::HasRuleWithTarget(TString const&) const'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::DistancetoPrimitive(int, int)'
/opt/simu/root/lib/libRIO.so: undefined reference to `TExMap::Add(unsigned
long long, long long, long long)'
/opt/simu/root/lib/libGraf.so: undefined reference to `TGraph::SetTitle(char
const*)'
/opt/simu/root/lib/libRIO.so: undefined reference to
`ROOT::TSchemaRule::IsRenameRule() const'
/opt/simu/root/lib/libGpad.so: undefined reference to
`TVirtualPadPainter::Streamer(TBuffer&)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraphErrors::Apply(TF1*)'
/opt/simu/root/lib/libRIO.so: undefined reference to `typeinfo for
TVirtualStreamerInfo'
/opt/simu/root/lib/libGraf.so: undefined reference to `TGraph::TGraph(int)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::UseCurrentStyle()'
/opt/simu/root/lib/libGraf.so: undefined reference to `TGraph::FitPanel()'
/opt/simu/root/lib/libGraf.so: undefined reference to `TGraph::TGraph(int,
float const*, float const*)'
/opt/simu/root/lib/libRIO.so: undefined reference to `TProcessID::GetPIDs()'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TClass::GetStreamerInfo(int) const'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TClass::GetSchemaRules() const'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TVirtualStreamerInfo::Optimize(bool)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::ExecuteEvent(int, int, int)'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TStreamerArtificial::Class()'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::GetErrorY(int) const'
/opt/simu/root/lib/libGraf.so: undefined reference to `G__set_tagnum'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TClass::GetClass(std::type_info const&, bool, bool)'
/opt/simu/root/lib/libGpad.so: undefined reference to
`TGraph::PaintGraph(int, double const*, double const*, char const*)'
/opt/simu/root/lib/libGraf.so: undefined reference to `TGraph::Apply(TF1*)'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TVirtualStreamerInfo::CanOptimize()'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::InitPolynom(double, double)'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TDirectory::RegisterContext(TDirectory::TContext*)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TColor::GetColorBright(int)'
/opt/simu/root/lib/libGpad.so: undefined reference to `typeinfo for
TVirtualPadPainter'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::operator=(TGraph const&)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::SetEditable(bool)'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TExMap::Remove(unsigned long long, long long)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::DrawGraph(int, int const*, int const*, char const*)'
/opt/simu/root/lib/libRint.so: undefined reference to
`TApplication::ProcessRemote(char const*, int*)'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TROOT::MakeDefCanvas() const'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::InsertPoint()'
/opt/simu/root/lib/libGraf.so: undefined reference to
`TGraph::GetCovariance() const'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TProcessID::CheckInit()'
/opt/simu/root/lib/libPostscript.so: undefined reference to
`TStyle::GetPaperSize(float&, float&) const'
/opt/simu/root/lib/libGraf.so: undefined reference to `TGraph::TGraph()'
/opt/simu/root/lib/libRIO.so: undefined reference to
`TVirtualStreamerInfo::CanDelete()'
/opt/simu/root/lib/libGraf.so: undefined reference to `TGraph::GetRMS(int)
const'

2010/3/14 sebnem erturk <sebnem.erturk at gmail.com>

> Hi Nicolas,
>
> By using this command $ROOT/bin/root-config --libs, you can check which
> ROOT libraries you need.
>
> Then,  you just need to variables.gmk   (under gate directory) file
>
> EXTRALIBS += -L$(ROOTSYS)/lib/root \
> -lCore -lCint \
> -lHist -lGraf -lGraf3d -lGpad \
> -lTree -lRint -lPostscript \
> -lMatrix -lPhysics \
> -lm -ldl -lpthread -rdynamic\
>  -lRIO -lNet -lThread -lMathCore
>
> hope this helps!!!
>
> Sebnem
>
> On Sun, Mar 14, 2010 at 9:51 PM, Nicolas Ivanovich <nivanovich at gmail.com>wrote:
>
>> Hi Gate users.
>>
>> Some time ago I installed Gate 5 over a virtual machine with Ubuntu. Now I
>> need install it over a Linux system that runs alone, out of a virtual
>> machine. I am trying to install Gate 4. I have installed the following
>> software:
>>
>> geant4: version 9.1
>> root: I don't know which version it is
>> clhep: version 2.0.3.2
>> gate: version 4.0
>> All this software i could compile it without problems. When I tried to
>> make
>> gate I got the following message:
>>
>> source/management finished
>> Creating/replacing object files in ./tmp/Linux-g++/Gate/libGate.a ...
>> ar: creating ./tmp/Linux-g++/Gate/libGate.a
>> Compiling Gate.cc ...
>> Using granular libraries ...
>> Linking Gate ...
>> /usr/bin/ld: cannot find -lGraf
>> collect2: ld returned 1 exit status
>> make: *** [bin/Linux-g++/Gate] Error 1
>>
>> Thank you very much once again.
>> _______________________________________________
>> Gate-users mailing list
>> Gate-users at lists.opengatecollaboration.org
>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>>
>
>
>
> --
> Sebnem Erturk
> University of Pisa
> Applied Physics Dpt.
> Largo Pontecorvo
> 56127 Pisa-Italy
> Office :0039 050 2214346
> Mobile :0039 345 3331440
> http://www.df.unipi.it/~fiig/ <http://www.df.unipi.it/%7Efiig/>
>