[Gate-users] linking problem

[sebnem erturk]

Hi Simon,

finally we solved the issue!
We achieved to run GATE4 with CLHEP 2.0.3.2, geant4.9.1 and root5.26.

Apparently gate4 needs pointers to extra (new) libraries in the
variables.gmk file.

-lRIO -lNet -lMathCore -lThread -pthread

We found the complete list of all the libraries using the command you
pointed out:
$ROOT/bin/root-config --libs

Thank you very much for the support
best regards,
Sebnem & Emanuele :)


On Tue, Mar 9, 2010 at 11:40 AM, Simon Stute <gate.stute at gmail.com> wrote:

> Hi,
>
> When you see class names beginning with a T it is always related to root.
> So there are 2 choices :
>  1. Just wrong definition in the -L and -l options in the makefile process
> (problem related to root-config program).
>  2. Error occured during compilation of root
>
> If you are sure that 2 is good, so just execute the root-config program
> (that is in $ROOTSYS/bin), with the option --libs.
> This will output some options that will be used during the linking process
> of Gate.
> The first thing that is printed out is the PATH to the library.
> So just see if your root libraries are in there, and if it is not the case,
> just move them to this PATH that root-config is pointing to.
>
> Hope it will work,
> Simon
>
> On Tue, Mar 9, 2010 at 11:23 AM, sebnem erturk <sebnem.erturk at gmail.com>wrote:
>
>> Hi All,
>>
>> We are trying to install gate4 in a debian 64bit machine. We successfully
>> compiled CLHEP 2.0.3.2, geant4.9.1 and root5.26. We still have some issues
>> with GATE4. Compiling seems fine but we have some problems when linking.
>> We're using the last version of gcc, the 4.4.3.
>>
>>
>> Using global libraries ...
>> Linking Gate ...
>> /home/gate/root/lib/libHist.so: undefined reference to
>> `TVirtualFitter::GetDefaultFitter()'
>> /home/gate/root/lib/libTree.so: undefined reference to
>> `TFileCacheRead::TFileCacheRead(TFile*, int)'
>> /home/gate/root/lib/libTree.so: undefined reference to
>> `TFile::GetCacheRead() const'
>> /home/gate/root/lib/libHist.so: undefined reference to
>> `ROOT::Fit::FitResult::Print(std::basic_ostream<char,
>> std::char_traits<char>
>> >&, bool) const'
>> /home/gate/root/lib/libTree.so: undefined reference to
>> `TBufferFile::WriteClones(TClonesArray*, int)'
>> /home/gate/root/lib/libTree.so: undefined reference to
>> `TBufferFile::WriteArray(float const*, int)'
>> /home/gate/root/lib/libTree.so: undefined reference to
>> `TSQLRow::Streamer(TBuffer&)'
>> /home/gate/root/lib/libTree.so: undefined reference to
>> `TBufferFile::WriteVersion(TClass const*, bool)'
>> /home/gate/root/lib/libHist.so: undefined reference to
>> `ROOT::Fit::BinData::Initialize(unsigned int, unsigned int,
>> ROOT::Fit::BinData::ErrorType)'
>> /home/gate/root/lib/libTree.so: undefined reference to `typeinfo for
>> TSQLResult'
>> /home/gate/root/lib/libTree.so: undefined reference to
>> `TBufferFile::ReadObject(TClass const*)'
>> /home/gate/root/lib/libTree.so: undefined reference to `TKey::Create(int,
>> TFile*)'
>> /home/gate/root/lib/libTree.so: undefined reference to
>> `TThread::TThread(char const*, void* (*)(void*), void*,
>> TThread::EPriority)'
>> /home/gate/root/lib/libTree.so: undefined reference to
>> `TStreamerInfo::GetValueClones(TClonesArray*, int, int, int, int) const'
>>
>> Any kind of help will be appreciated
>> Regards,
>>
>>
>> --
>> Sebnem Erturk
>> University of Pisa
>> Applied Physics Dpt.
>> Largo Pontecorvo
>> 56127 Pisa-Italy
>> Office :0039 050 2214346
>> Mobile :0039 345 3331440
>> http://www.df.unipi.it/~fiig/ <http://www.df.unipi.it/%7Efiig/>
>> _______________________________________________
>> Gate-users mailing list
>> Gate-users at lists.opengatecollaboration.org
>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>>
>
>


-- 
Sebnem Erturk
University of Pisa
Applied Physics Dpt.
Largo Pontecorvo
56127 Pisa-Italy
Office :0039 050 2214346
Mobile :0039 345 3331440
http://www.df.unipi.it/~fiig/