[Gate-users] coma, VanAdium and related materials in GateMaterials.db

[Simon Stute]

Hi Marcin,

It will be done !

Simon

On Tue, Jun 29, 2010 at 12:27 PM, Marcin Balcerzyk <m.balcerzyk at pluri.ucm.es
> wrote:

> Dear Simon.
>
> In GateMaterials.db (from Gate version 5.0) all materials that include V
> (which there is consequently Vandium, instead of correct Vanadium), have
> this misplaced coma instead of semicolon. The affected materials are
> Adipose, LungMoby and Body. There were recently several postings concerning
> Adipose and LungMoby malfunctioning.
>
> Maybe the future patch of Gate should have the V element name corrected and
> the coma-semicolon issue corrected?
>
> Marcin Balcerzyk
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Mon, 28 Jun 2010 18:52:27 +0200
> From: Simon Stute <gate.stute at gmail.com>
> Subject: Re: [Gate-users] Gate-users Digest, Vol 49, Issue 28
> To: Anne Sauve <ACSauve at lbl.gov>
> Cc: gate-users at lists.opengatecollaboration.org
> Message-ID:
>        <AANLkTilOZdPw7SLjjZCtmOalGej8ZHP2WgfKESlVPaGl at mail.gmail.com>
> Content-Type: text/plain; charset=ISO-8859-1
>
> Hi,
>
> I found this line in your file !
>
>        +el: name=Vandium   , f=0.0
>
> There is a "," instead of a ";".
>
> Simon
>
> On Mon, Jun 28, 2010 at 6:48 PM, Anne Sauve <ACSauve at lbl.gov> wrote:
>
> > Thanks Liliana for your message.
> > I checked the GateMaterials.db (I attach it)
> > but could not find any obvious ";" mistake
> > I used Intestine instead of Adipose and it seems to work.
> > I will use that for now.
> >
> > All the best,
> > Anne
> > ----- Original Message -----
> > From: gate-users-request at lists.opengatecollaboration.org
> > Date: Monday, June 28, 2010 3:00 am
> > Subject: Gate-users Digest, Vol 49, Issue 28
> > To: gate-users at lists.opengatecollaboration.org
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> > > Today's Topics:
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> > >   1. Re: Adipose is incorrect/could not find prefix ?
> > >      (Liliana Caldeira)
> > >
> > >
> > > --------------------------------------------------------------------
> > > --
> > >
> > > Message: 1
> > > Date: Mon, 28 Jun 2010 08:08:28 +0000
> > > From: Liliana Caldeira <llcaldeira at gmail.com>
> > > Subject: Re: [Gate-users] Adipose is incorrect/could not find
> > > prefix ?
> > > To: Anne Sauve <ACSauve at lbl.gov>
> > > Cc: gate-users at lists.opengatecollaboration.org
> > > Message-ID:
> > >       <AANLkTikG2Up4w1xDXm1uJbwcCOfq3X3i8hrVeBESILo1 at mail.gmail.com>
> > > Content-Type: text/plain; charset=ISO-8859-1
> > >
> > > Hello Anne,
> > >
> > > Once I had the same problem and it was a mistake in the database file.
> > > Somewhere there was a , instead of a ; or something like that. Take a
> > > look at your database file for such mistakes. Also make sure that you
> > > correct the database file that GATE is using. I lost some time,
> > > because I was correcting a database file in a directory that was just
> > > a copy and not the one GATE was using.
> > >
> > > Good luck,
> > > Liliana Caldeira
> > >
> > >
> > >
> > > On Fri, Jun 25, 2010 at 4:12 PM, Anne Sauve <ACSauve at lbl.gov> wrote:
> > > > Hello the collaboration,
> > > >
> > > > I am using a voxelized phantom and I have in my attenuation
> > > > materials Adipose among others (see attachment)
> > > > in my macro (see attachment) I get an error at
> > > > /gate/moby/interfileReader/rangeTranslator/readTable
> > > attenuation_range.dat>
> > > > The error is:
> > > > !!! GateMDBFile:
> > > > ? The definition of the element/material 'Adipose' is incorrect:
> > > > ? could not find any prefix for the abundance field.
> > > > You should check this definition in the database file.
> > > > Computation aborted !!!
> > > >
> > > > I can't find what is wrong in GateMaterials.db
> > > >
> > > > Thank you for your help,
> > > >
> > > > Anne
> > > >
> > > > Anne Sauve, Ph.D
> > > > Lawrence Berkeley National Laboratory
> > > > 1 Cyclotron Road., Mail Stop 55R-0121
> > > > Berkeley, CA 94720-8119
> > > > Email: ?ACSauve at lbl.gov
> > > > Phone: ?510-486-7131
> > > > Fax: 510-486-4768
> > > >
> > > >
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