[Gate-users] OS X 10.6.3 Snow Leopard

Tue Jun 1 22:07:29 CEST 2010

Hi Eunsin,

since you installed root 5.17 I am not sure this fits to the other
programs, as the error points to something  in this direction.
I used a more up-to-date version of root (5.24).
Maybe, you give it a try and recompile this newer version.

Kind regards,

Uwe Pietrzyk

-----
On 01.06.2010, at 21:33, Eunsin Lee wrote:

> Hi Uwe,
> 
> This is not the case.
> I got new macbook pro (core i5) with snow leopard last week.
> I downloaded all other sources and built them in.
> Here what I installed:
> 
> CLHEP 2.0.4.2
> ROOT 5.17
> GEANT 4.9.2.p03
> GATE 6.0_p01
> 
> when installing geant I followed the instruction on GATE web, adding option build shared library.
> Hmm...
> 
> Thanks a lot again,
> 
> Eunsin
> 
> ########################################
> Eunsin Lee
> Doctoral Student of Physics
> Texas A&M University
> CDF and CMS Collaborations
> elee at fnal.gov
> 979-845-7899
> ########################################
> 
> ----- Original Message -----
> From: Uwe Pietrzyk <u.pietrzyk at fz-juelich.de>
> Date: Tuesday, June 1, 2010 3:18 pm
> Subject: Re: [Gate-users] OS X 10.6.3 Snow Leopard
> To: Eunsin Lee <elee at fnal.gov>
> Cc: gate-users at lists.opengatecollaboration.org
> 
>> Hi Eunsin,
>> 
>> it looks a bit that you are mixing libraries compiled and linked
>> under 32 and 64 bit. In case you upgraded from a former
>> Leopard 32bit system and now are running SnowLeopard,
>> you need to recompile the whole bunch of programs, starting
>> from CLHEP, etc. and ending with gate.
>> 
>> Hope this comes closer to a solution.
>> 
>> Kind regards,
>> 
>> Uwe Pietrzyk
>> -----
>> On 01.06.2010, at 19:25, Eunsin Lee wrote:
>> 
>>> Hi Uwe,
>>> 
>>> I set as:
>>> export PATH=$PATH:$GATEHOME/bin/Darwin-g++
>>> 
>>> But still got the same errors...
>>> Any other ideas?
>>> 
>>> Thanks so much,
>>> Eunsin
>>> 
>>> ########################################
>>> Eunsin Lee
>>> Doctoral Student of Physics
>>> Texas A&M University
>>> CDF and CMS Collaborations
>>> elee at fnal.gov
>>> 979-845-7899
>>> ########################################
>>> 
>>> ----- Original Message -----
>>> From: Uwe Pietrzyk <u.pietrzyk at fz-juelich.de>
>>> Date: Tuesday, June 1, 2010 12:07 pm
>>> Subject: Re: [Gate-users] OS X 10.6.3 Snow Leopard
>>> To: Eunsin Lee <elee at fnal.gov>
>>> 
>>>> Hi Eunsin,
>>>> 
>>>> did you add  something like 
>>>> 
>>>> setenv PATH "${PATH}:${GATEHOME}/bin/Darwin-g++"
>>>> 
>>>> in your .cshrc or .bashrc, ... ?
>>>> 
>>>> I remember that I had to add this line, otherwise the shared 
>> libraries 
>>>> were not found.
>>>> 
>>>> Hope this helps!
>>>> 
>>>> Kind regards,
>>>> 
>>>> Uwe Pietrzyk
>>>> -----
>>>> On 01.06.2010, at 17:55, Eunsin Lee wrote:
>>>> 
>>>>> Hi Uwe and all who kindly replied,
>>>>> 
>>>>> At the end of installing process, the same error message showing up:
>>>>> 
>>>>> =====
>>>>> Creating shared library tmp/Darwin-g++/Gate/libGate.dylib ...
>>>>> ld: warning: in GateARFDataToRoot.o, file was built for i386 which 
>> 
>>>> is not the architecture being linked (x86_64)
>>>>> ld: warning: in GateARFDataToRootMessenger.o, file was built for 
>>>> i386 which is not the architecture being linked (x86_64)
>>>>> ld: warning: in GateARFSD.o, file was built for i386 which is not 
>> 
>>>> the architecture being linked (x86_64)
>>>>> ld: warning: in GateARFSDMessenger.o, file was built for i386 
>> which 
>>>> is not the architecture being linked (x86_64)
>>>>> ld: warning: in GateARFTable.o, file was built for i386 which is 
>> not 
>>>> the architecture being linked (x86_64)
>>>>> ld: warning: in GateARFTableMgr.o, file was built for i386 which 
>> is 
>>>> not the architecture being linked (x86_64)
>>>>> ld: warning: in GateARFTableMgrMessenger.o, file was built for 
>> i386 
>>>> which is not the architecture being linked (x86_64)
>>>>> .
>>>>> .
>>>>> .
>>>>> ld: symbol(s) not found
>>>>> collect2: ld returned 1 exit status
>>>>> make: *** [bin/Darwin-g++/Gate] Error 1
>>>>> =====
>>>>> ########################################
>>>>> Eunsin Lee
>>>>> Post Doctoral Research Associate
>>>>> PET Imaging Group
>>>>> University of Pennsylvania
>>>>> elee at fnal.gov
>>>>> 979-574-7235
>>>>> ########################################
>>>>> 
>>>>> ----- Original Message -----
>>>>> From: Uwe Pietrzyk <u.pietrzyk at fz-juelich.de>
>>>>> Date: Tuesday, June 1, 2010 10:59 am
>>>>> Subject: Re: [Gate-users] OS X 10.6.3 Snow Leopard
>>>>> To: Eunsin Lee <elee at fnal.gov>
>>>>> Cc: gate-users at lists.opengatecollaboration.org
>>>>> 
>>>>>> Hi Eunsin,
>>>>>> 
>>>>>> this is what I successfully use to run GATE on my MacBook Pro
>>>>>> under Mac OS X (10.6.3):
>>>>>> 
>>>>>> CLHEP 2.0.3.2
>>>>>> geant4.9.2.p03
>>>>>> root 5.24
>>>>>> gate_v6.0_p01
>>>>>> 
>>>>>> (I am not using lmf_v3.0)
>>>>>> 
>>>>>> Hope this helps.
>>>>>> 
>>>>>> Kind regards,
>>>>>> 
>>>>>> Uwe Pietrzyk
>>>>>> -----
>>>>>> On 01.06.2010, at 15:36, Eunsin Lee wrote:
>>>>>> 
>>>>>> Dear all,
>>>>>> 
>>>>>> Has anyone ever successfully built GATE on mac OS X 10.6.3 snow leopard?
>>>>>> If so what versions of geant should I install?
>>>>>> 
>>>>>> Thanks,
>>>>>> Eunsin
>>>>>> 
>>>>>> ########################################
>>>>>> Eunsin Lee
>>>>>> Doctoral Student of Physics
>>>>>> Texas A&M University
>>>>>> CDF and CMS Collaborations
>>>>>> elee at fnal.gov<
>>>>>> 979-845-7899
>>>>>> ########################################
>>>>>> _______________________________________________
>>>>>> Gate-users mailing list
>>>>>> Gate-users at lists.opengatecollaboration.org
>>>>>> http://lists.opengatecollaboration.org/mailman/listinfo/gate-users
>>>>>> 
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>>>>>> Prof. Dr. Uwe Pietrzyk
>>>>>> Diplom-Physiker
>>>>>> Institut für Neurowissenschaften und Medizin / INM-1
>>>>>> Forschungszentrum Jülich GmbH
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>>>>>> Tel: +49-2461-61 4763
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>>>>>> 
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>>>>>> Gaußstr. 20
>>>>>> 42097 Wuppertal
>>>>>> Tel: +49-(0)202-439-3523
>>>>>> Fax: +49-(0)202-439-2811
>>>>>> eMail: Uwe.Pietrzyk at physik.uni-wuppertal.de<
>>>>>> 
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>>>> /----------------------------------------------------------------------
>>>> Prof. Dr. Uwe Pietrzyk
>>>> Diplom-Physiker
>>>> Institut für Neurowissenschaften und Medizin / INM-1
>>>> Forschungszentrum Jülich GmbH
>>>> 52425 Jülich
>>>> Tel: +49-2461-61 4763
>>>> Fax: +49-2461-61 2820 + 8229
>>>> Mobil: +49-162-103-4871
>>>> eMail: U.Pietrzyk at fz-juelich.de
>>>> http://www.fz-juelich.de/inm
>>>> &
>>>> Bergische Universität Wuppertal
>>>> Fachbereich C - Physik / D.08.01
>>>> Gaußstr. 20
>>>> 42097 Wuppertal
>>>> Tel: +49-(0)202-439-3523
>>>> Fax: +49-(0)202-439-2811
>>>> eMail: Uwe.Pietrzyk at physik.uni-wuppertal.de
>>>> http://www.medizinphysik.uni-wuppertal.de
>>>> ----------------------------------------------------------------------/
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>> 
>> /----------------------------------------------------------------------
>> Prof. Dr. Uwe Pietrzyk
>> Diplom-Physiker
>> Institut für Neurowissenschaften und Medizin / INM-1
>> Forschungszentrum Jülich GmbH
>> 52425 Jülich
>> Tel: +49-2461-61 4763
>> Fax: +49-2461-61 2820 + 8229
>> Mobil: +49-162-103-4871
>> eMail: U.Pietrzyk at fz-juelich.de
>> http://www.fz-juelich.de/inm
>> &
>> Bergische Universität Wuppertal
>> Fachbereich C - Physik / D.08.01
>> Gaußstr. 20
>> 42097 Wuppertal
>> Tel: +49-(0)202-439-3523
>> Fax: +49-(0)202-439-2811
>> eMail: Uwe.Pietrzyk at physik.uni-wuppertal.de
>> http://www.medizinphysik.uni-wuppertal.de
>> ----------------------------------------------------------------------/
>> 
>> 
>> 
>> 
>> 
>> 
>> 

/----------------------------------------------------------------------
Prof. Dr. Uwe Pietrzyk
Diplom-Physiker
Institut für Neurowissenschaften und Medizin / INM-1
Forschungszentrum Jülich GmbH
52425 Jülich
Tel: +49-2461-61 4763
Fax: +49-2461-61 2820 + 8229
Mobil: +49-162-103-4871
eMail: U.Pietrzyk at fz-juelich.de
http://www.fz-juelich.de/inm
&
Bergische Universität Wuppertal
Fachbereich C - Physik / D.08.01
Gaußstr. 20
42097 Wuppertal
Tel: +49-(0)202-439-3523
Fax: +49-(0)202-439-2811
eMail: Uwe.Pietrzyk at physik.uni-wuppertal.de
http://www.medizinphysik.uni-wuppertal.de
----------------------------------------------------------------------/