[Gate-users] Subject: Re: Trouble Compiling gate_v5_0_0_p1

[Thibault Frisson]

Hi,

After "source env_gate.sh", try:
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$GATEHOME/tmp/$G4SYSTEM/Gate
or
after "source env_gate.csh", try:
setenv LD_LIBRARY_PATH ${GATEHOME}/tmp/${G4SYSTEM}/Gate:$LD_LIBRARY_PATH

Thibault


> Dear all,
>
> In order to get GATE to compile, I had to go back and re-compile CLHEP,
> geant4, and root. However, now I have another problem. When I try to run
> GATE, I receive this error message:
>
> "error while loading shared libraries: libGate.so: cannot open shared
> object
> file: No such file or directory"
>
> I found libGate.so in my /gate_v6.0_p01/tmp/Linux64-g++/Gate/ directory. I
> tried copying it to other subfolders within my gate directory to see if
> GATE
> would find it. No luck.
>
> Any suggestions?
>
> Sincerely,
> Fares
>
>
> On 4/8/10 2:28 PM, "Fares Alhassen" <fares.alhassen at radiology.ucsf.edu>
> wrote:
>
>> Thank you and Samuel Burg for the advice. I was able to compile CLHEP
>> successfully following the instructions in GATE wiki install guide. As
>> for
>> root, I had asked about that before on this forum and received the
>> advice
>> below for installing on 64-bit Ubuntu 9.04. I don¹t know how helpful it
>> will
>> be to you:
>>
>> Before installing root on 64-bit Ubuntu 9.04 (jaunty jackalope), you
>> need to
>> update GSL: GSL build:
>>
>> 1. Make a folder for the gsl include and library files. From the
>> /home/username/ directory:
>> mkdir gsl
>>
>> 2. Download the gsl source to your main directory (/home/username/). I
>> downloaded gsl-1.13 and extracted the tar file so that the source folder
>> was
>> home/username/gsl-1.13
>>
>> 3. Configure, compile, and install gsl. From the /home/username/
>> directory:
>> cd gsl-1.13 ./configure ­prefix=/home/username/gsl ­with-pic make make
>> install
>>
>> 4. Follow the instructions below to download and install root. I used
>> the
>> SVN method to acquire the source. Use the following configure for root:
>> ./configure --with-gsl-incdir=/home/username/gsl/include
>> ­with-gsl-libdir=/
>> home/username/gsl/lib ­disable-xrootd
>>
>> 5. Install root by running the followings commands:
>> make
>> make install
>> ldconfig
>>
>> Sincerely,
>> Fares
>>
>>
>>
>> On 4/8/10 8:01 AM, "Melissa Freedenberg" <mfreeden at ucdavis.edu> wrote:
>>
>>> Fares, I solved this problem first by finding where gcc-4.2 and gcc are
>>> located. I found them in the same directory.
>>>>
>>>>>>>> locate gcc-4.2
>>>>>>>> locate gcc
>>>>
>>>> Then, I removed the current gcc executable (version 4.3) and replaced
>>>> it
>>>> with
>>>> the older version.
>>>>
>>>>>>>> cd <directory gcc is in>
>>>>>>>> rm gcc
>>>>>>>> cp gcc-4.2 gcc
>>>>
>>>> I think I may have done the same for g++
>>>>
>>>> http://ubuntuforums.org/ has backlog of some similar questions, so you
>>>> may
>>>> want to check it out if for some reason this does not work for you,.
>>>>
>>>> I was able to compile GATE this way (using compiler version 4.1), but
>>>> I
>>>> still
>>>> had problems compiling root and CLHEP. If you are able to compile root
>>>> and
>>>> CLHEP successfully, please let me know.
>>>>
>>>> Thanks,
>>>>
>>>> Melissa
>>>>
>>>>
>>>> -------------------------------------------------------
>>>> Dear all,
>>>>
>>>> I think I have the same problem described below. I installed gcc-4.2
>>>> and
>>>> g++-4.2 on my system, which currently has 4.3.3 versions of both. I
>>>> had
>>>> installed non-GATE packages using I think 4.2, which is why I have
>>>> GATE5
>>>> working properly on my system.
>>>>
>>>> However, I'm not sure how to change the makefiles for GATE so that it
>>>> uses
>>>> g++-4.2 instead of g++ (the latest version on my system). Does anyone
>>>> know
>>>> where the executable is defined?
>>>>
>>>> Sincerely,
>>>> Fares
>>>>
>>>> On Thu, Apr 8, 2010 at 2:52 AM,
>>>> <gate-users-request at lists.opengatecollaboration.org> wrote:
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>
> ------------------------------------------------
> Fares Alhassen
> Associate Specialist
> UCSF Physics Research Laboratory
> Department of Radiology and Biomedical Imaging
> University of California, San Francisco
> 185 Berry Street, Suite 350 BOX # 0946
> San Francisco, CA 94143-0946 (94107 UPS/FedEx/DHL)
> email: fares.alhassen at radiology.ucsf.edu
> T: (415) 353-9438
> F: (415) 353-9421
> web: http://radiology.ucsf.edu/physics
>
>
>
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>


-- 
Thibault Frisson, Phd
Post-doctorant

Centre de lutte contre le cancer Léon Bérard
Service de radiothérapie
28 rue Laënnec
69373 Lyon cedex 08
Tel : 04 78 78 51 51
      06 70 37 05 21

Laboratoire CREATIS (UMR CNRS 5220)
INSA - Bâtiment Blaise Pascal
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69621 Villeurbanne cedex

http://www.creatis.insa-lyon.fr/rio