[Gate-users] Subject: Re: Trouble Compiling gate_v5_0_0_p1

Fares Alhassen fares.alhassen at radiology.ucsf.edu
Thu Apr 8 23:28:13 CEST 2010


Thank you and Samuel Burg for the advice. I was able to compile CLHEP
successfully following the instructions in GATE wiki install guide. As for
root, I had asked about that before on this forum and received the advice
below for installing on 64-bit Ubuntu 9.04. I don¹t know how helpful it will
be to you:

Before installing root on 64-bit Ubuntu 9.04 (jaunty jackalope), you need to
update GSL: GSL build:

1. Make a folder for the gsl include and library files. From the
/home/username/ directory:
mkdir gsl

2. Download the gsl source to your main directory (/home/username/). I
downloaded gsl-1.13 and extracted the tar file so that the source folder was
home/username/gsl-1.13

3. Configure, compile, and install gsl. From the /home/username/ directory:
cd gsl-1.13 ./configure ­prefix=/home/username/gsl ­with-pic make make
install

4. Follow the instructions below to download and install root. I used the
SVN method to acquire the source. Use the following configure for root:
./configure --with-gsl-incdir=/home/username/gsl/include ­with-gsl-libdir=/
home/username/gsl/lib ­disable-xrootd

5. Install root by running the followings commands:
make
make install
ldconfig

Sincerely,
Fares



On 4/8/10 8:01 AM, "Melissa Freedenberg" <mfreeden at ucdavis.edu> wrote:

> Fares, I solved this problem first by finding where gcc-4.2 and gcc are
> located. I found them in the same directory.
>> 
>>>> >> locate gcc-4.2
>>>> >> locate gcc
>> 
>> Then, I removed the current gcc executable (version 4.3) and replaced it with
>> the older version.
>> 
>>>> >> cd <directory gcc is in>
>>>> >> rm gcc
>>>> >> cp gcc-4.2 gcc
>> 
>> I think I may have done the same for g++
>> 
>> http://ubuntuforums.org/ has backlog of some similar questions, so you may
>> want to check it out if for some reason this does not work for you,.
>> 
>> I was able to compile GATE this way (using compiler version 4.1), but I still
>> had problems compiling root and CLHEP. If you are able to compile root and
>> CLHEP successfully, please let me know.
>> 
>> Thanks, 
>> 
>> Melissa
>> 
>> 
>> -------------------------------------------------------
>> Dear all,
>> 
>> I think I have the same problem described below. I installed gcc-4.2 and
>> g++-4.2 on my system, which currently has 4.3.3 versions of both. I had
>> installed non-GATE packages using I think 4.2, which is why I have GATE5
>> working properly on my system.
>> 
>> However, I'm not sure how to change the makefiles for GATE so that it uses
>> g++-4.2 instead of g++ (the latest version on my system). Does anyone know
>> where the executable is defined?
>> 
>> Sincerely,
>> Fares
>> 
>> On Thu, Apr 8, 2010 at 2:52 AM,
>> <gate-users-request at lists.opengatecollaboration.org> wrote:
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