[Gate-users] Problems with installation of ECAT7 library

[Ida Häggström]

Hi again!
I made a little typo in my commands previously... It SHOULD be

> cd <...>/gate/ECAT
> make -f Makefile.unix
> rm *.o

> mkdir <...>/gate/ECAT
> mkdir <...>/gate/ECAT/lib

> mkdir <...>/gate/ECAT/lib/Linux-g++
> mkdir <...>/gate/ECAT/include

Cheers!
Ida

Den 9 september 2009 15.21 skrev Ida Häggström <ida.haggstrom at radfys.umu.se>
:

> Hi all!
> I've successfully installed and run GATE for a week or so now when I
> decided I probably need the ECAT7 output as well.. (I omitted that the first
> time I installed GATE). Anyway, I've installed the package according to the
> guide at "http://cc.in2p3.fr/docenligne/674/en". I've thus run
>
> > cd <...>/gate/ECAT
> > make -f Makefile.unix
> > rm *.o
> > mkdir <...>/gate/gate_v5.0.0/ECAT
> > mkdir <...>/gate/gate_v5.0.0/ECAT/lib
> > mkdir <...>/gate/gate_v5.0.0/ECAT/lib/Linux-g++
> > mkdir <...>/gate/gate_v5.0.0/ECAT/include
>
> After this I copy the files "matrix.h" and "machine_indep.h" into the
> ECAT/include directory and I copy the file "libecat.a" into
> ECAT/lib/Linux-g++.
>
> I found on a previous thread that it was best to completely recompile GATE,
> with make clean and all... so I remove and reinstall GATE (note that I have
> NOT set the ECAT7_HOME variable yet!):
>
> > cd <...>/gate/gate_v_5.0.0
> > make clean (I also remove the tmp directory)
> > make
>
> After successful GATE compilation I set
>
> > export ECAT7_HOME=<...>/gate/ECAT
>
> I try and run the example PET_Ecat_System.mac in GATE, with default sinogram and ecat7 output, but it seems the ECAT7 library isn't found or something:
> ....
> GATE object:        'digitizer/finalCoinc'
>
> Is enabled?         Yes
> Nb of elements:     0
> Attached to:        'digitizer'
> Output:             'finalCoinc'
> ***** COMMAND NOT FOUND </gate/output/sinogram/StoreDelayed> *****
>
> ***** Batch is interupted!! *****
>
> Graphics systems deleted.
> Visualization Manager deleting...
> GateRTPhantomMgr deleting...
> [ida at localhost example_PET_Scanner]$
> ....
>
> If I remove the sinogram output and only use ecat7 output I instead get
>
> ...
> ***** COMMAND NOT FOUND </gate/output/ecat7/enable> *****
> ....
>
> When I try to compile GATE with the ECAT7_HOME variable set BEFORE
> compilation I don't get a successful linking:
> ....
> Creating shared library tmp/Linux-g++/Gate/libGate.so ...
> Creating/replacing object files in ./tmp/Linux-g++/Gate/libGate.a ...
> ar: creating ./tmp/Linux-g++/Gate/libGate.a
> Compiling Gate.cc ...
> Using global libraries ...
> Linking Gate ...
> ./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateVObjectMove::
> PushMyPlacements(CLHEP::HepRotation const&, CLHEP::Hep3Vector const&,
> double)'
> ./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateVolumeID::
> MoveToBottomVolumeFrame(CLHEP::Hep3Vector, int) const'
> ./tmp/Linux-g++/Gate/libGate.so: undefined reference to
> `GateToASCII::GateToASCII(G4String const&, GateOutputMgr*, DigiMode)'
> ...
> ./tmp/Linux-g++/Gate/libGate.so: undefined reference to
> `GateToRoot::GetPHData(ComptonRayleighData&)'
> ./tmp/Linux-g++/Gate/libGate.so: undefined reference to
> `GateTrack::GetTrackID()'
> collect2: ld returned 1 exit status
> make: *** [bin/Linux-g++/Gate] Error 1
> ....
>
> My question is do you set the ECAT7_HOME variable before or after GATE
> compilation, and how do you get GATE to enable to ECAT7 output?
> Thanks in advance!
> /Ida
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20090909/857a0969/attachment.htm>