[Gate-users] gate5 compilation on Ubuntu problem

[Simon Stute]

Hi,

The file that are missing are ROOT header files, that have to be in
$ROOTSYS/include directory.
Maybe your are in the case where you have another 'root' directory in this
include directory, in that case go in and move all files into ../

Hope this works,
Simon

On Mon, Oct 12, 2009 at 5:47 PM, Marko T. Oreskovic
<mtoreskovic at yahoo.com>wrote:

> Hi Simon,
> I have done as you have said and manage to start a compilation process, but
> with errors.
> This is now my output from terminal window:
>
> mtr at mtr-desktop:/usr/share/gate/gate_v5.0.0_p01$ source env_gate.sh
>
>
> The current value of G4INSTALL is: /usr/share/geant4/geant4.9.2.p01
> The current value of G4VERSION is: 9.2
>
> Launching Geant4 configuration script
> /usr/share/geant4/geant4.9.2.p01/env.sh
>
> On this machine the G4SYSTEM=Linux-g++
> On this machine the G4INSTALL=/usr/share/geant4/geant4.9.2.p01
> On this machine the G4LIB=/usr/share/geant4/geant4.9.2.p01/lib
> On this machine the
> G4LEVELGAMMADATA=/usr/share/geant4/geant4.9.2.p01/data/PhotonEvaporation2.0
> On this machine the
> G4RADIOACTIVEDATA=/usr/share/geant4/geant4.9.2.p01/data/RadioactiveDecay3.2
> On this machine the
> G4LEDATA=/usr/share/geant4/geant4.9.2.p01/data/G4EMLOW6.2
> On this machine the
> G4NEUTRONHPDATA=/usr/share/geant4/geant4.9.2.p01/data/G4NDL3.13
> On this machine the
> G4ABLADATA=/usr/share/geant4/geant4.9.2.p01/data/G4ABLA3.0
> On this machine the CLHEP_BASE_DIR=/usr/share/CLHEP
> On this machine the CLHEP_INCLUDE_DIR=/usr/share/CLHEP/include
> On this machine the CLHEP_LIB_DIR=/usr/share/CLHEP/lib
> On this machine the CLHEP_LIB=CLHEP
> On this machine the G4VIS_BUILD_OPENGLX_DRIVER=1
> On this machine the G4VIS_BUILD_RAYTRACERX_DRIVER=1
> On this machine the G4VIS_USE_OPENGLX=1
> On this machine the G4VIS_USE_RAYTRACERX=1
> On this machine the XMFLAGS=
> On this machine the XMLIBS=
> On this machine the XMFLAGS=
> On this machine the XAWFLAGS=
> On this machine the XAWLIBS=
> On this machine the G4LIB_BUILD_STATIC=1
> On this machine the G4LIB_USE_GRANULAR=1
> On this machine the G4UI_USE_TCSH=1
>
> Configuring GATE options
>
> G4WORKDIR set to .
> G4TMP set to ./tmp
> G4BIN set to ./bin
> Data analysis and output features enabled
> Ascii data output enabled
> Transport and generation of optical photons is enabled
> /lib directory is no /home/mtr/root
>          you should check that ROOT shared libraries are included in
> LD_LIBRARY_PATH
> Use of ROOT enabled
> ROOT real-time plotter disabled
> LMF data output disabled
> ECAT7 data output disabled
> GATEHOME is set to /usr/share/gate/gate_v5.0.0_p01
> Checking your path variable...
>  ==> OK: /usr/share/gate/gate_v5.0.0_p01/bin/Linux-g++ is already in your
> path variable
> G4VERSION9_2 is set: GATE is compatible with the geant4 version 9.2
>
> Done
>
> mtr at mtr-desktop:/usr/share/gate/gate_v5.0.0_p01$ make
> Making dependency for file Gate.cc ...
> In file included from
> ./source/mandatory_G4_classes/include/GateSteppingAction.hh:34,
>                  from Gate.cc:34:
> ./source/output/include/GateTrack.hh:10:19: error: TROOT.h: No such file or
> directory
> ./source/output/include/GateTrack.hh:11:19: error: TTree.h: No such file or
> directory
> In file included from Gate.cc:53:
> .
> .
> .etc...
> I'm getting a lot of these TROOT.h, TTree.h errors. Is this a problem with
> root LD_LIBRARY_PATH ?
> Here is how I configure my enviormental variables:
>
> export ROOTSYS=/home/mtr/root
> export PATH=$ROOTSYS/bin:$PATH
> export LD_LIBRARY_PATH=/home/mtr/root/lib:$LD_LIBRARY_PATH
>
> ROOT is installed in /home/mtr/root directory, and there is a lib directory
> in there.
> This is my LD_LIBRARY_PATH after export:
> mtr at mtr-desktop:/usr/share/gate/gate_v5.0.0_p01$ printenv LD_LIBRARY_PATH
> /home/mtr/root/lib:/usr/share/CLHEP/lib/:
>
> regards
> Marko
>
>
>
>
>
> --- On *Mon, 10/12/09, Simon Stute <gate.stute at gmail.com>* wrote:
>
>
> From: Simon Stute <gate.stute at gmail.com>
> Subject: Re: [Gate-users] gate5 compilation on Ubuntu problem
> To: "Marko T. Oreskovic" <mtoreskovic at yahoo.com>
> Cc: gate-users at lists.healthgrid.org
> Date: Monday, October 12, 2009, 10:49 AM
>
>
> Hi,
>
> When you launch a command as sudo, your personnal environment is not
> transmitted.
> So give all rights to blk-desktop in your gate directory, then launch the
> compilation as 'you' (without sudo), and once the compilation is successful
> you can give back all rights to root.
>
> Cheers,
> Simon
>
> On Fri, Oct 9, 2009 at 5:54 PM, Marko T. Oreskovic <mtoreskovic at yahoo.com<http://mc/compose?to=mtoreskovic@yahoo.com>
> > wrote:
>
>>  Hi all,
>> I'm new to linux and having problems compiling gate5 on Ubuntu 9.04, here
>> is my listing:
>>
>> blk at blk-desktop:/usr/share/gate/gate_v5.0.0_p01$ ls
>> benchmarks     env_gate.sh  GateMaterials.db  Materials.xml
>> README            Surfaces.xml
>> Cluster_Tools  examples     GNUmakefile       noverbose.mac
>> ReleaseNotes.pdf  variables.gmk
>> env_gate.csh   Gate.cc      license           prerunGate.mac  source
>> blk at blk-desktop:/usr/share/gate/gate_v5.0.0_p01$ source env_gate.sh
>>
>> The current value of G4INSTALL is: /usr/share/geant4/geant4.9.2.p01
>> The current value of G4VERSION is: 9.2
>>
>> Launching Geant4 configuration script
>> /usr/share/geant4/geant4.9.2.p01/env.sh
>>
>> On this machine the G4SYSTEM=Linux-g++
>> On this machine the G4INSTALL=/usr/share/geant4/geant4.9.2.p01
>> On this machine the G4LIB=/usr/share/geant4/geant4.9.2.p01/lib
>> On this machine the
>> G4LEVELGAMMADATA=/usr/share/geant4/geant4.9.2.p01/data/PhotonEvaporation2.0
>> On this machine the
>> G4RADIOACTIVEDATA=/usr/share/geant4/geant4.9.2.p01/data/RadioactiveDecay3.2
>> On this machine the
>> G4LEDATA=/usr/share/geant4/geant4.9.2.p01/data/G4EMLOW6.2
>> On this machine the
>> G4NEUTRONHPDATA=/usr/share/geant4/geant4.9.2.p01/data/G4NDL3.13
>> On this machine the
>> G4ABLADATA=/usr/share/geant4/geant4.9.2.p01/data/G4ABLA3.0
>> On this machine the CLHEP_BASE_DIR=/usr/share/CLHEP
>> On this machine the CLHEP_INCLUDE_DIR=/usr/share/CLHEP/include
>> On this machine the CLHEP_LIB_DIR=/usr/share/CLHEP/lib
>> On this machine the CLHEP_LIB=CLHEP
>> On this machine the G4VIS_BUILD_OPENGLX_DRIVER=1
>> On this machine the G4VIS_BUILD_RAYTRACERX_DRIVER=1
>> On this machine the G4VIS_USE_OPENGLX=1
>> On this machine the G4VIS_USE_RAYTRACERX=1
>> On this machine the XMFLAGS=
>> On this machine the XMLIBS=
>> On this machine the XMFLAGS=
>> On this machine the XAWFLAGS=
>> On this machine the XAWLIBS=
>> On this machine the G4LIB_BUILD_STATIC=1
>> On this machine the G4LIB_USE_GRANULAR=1
>> On this machine the G4UI_USE_TCSH=1
>>
>> Configuring GATE options
>>
>> G4WORKDIR set to .
>> G4TMP set to ./tmp
>> G4BIN set to ./bin
>> Data analysis and output features enabled
>> Ascii data output enabled
>> Transport and generation of optical photons is enabled
>> Use of ROOT disabled
>> ROOT real-time plotter disabled
>> LMF data output disabled
>> ECAT7 data output disabled
>> GATEHOME is set to /usr/share/gate/gate_v5.0.0_p01
>> Checking your path variable...
>>  ==> OK: /usr/share/gate/gate_v5.0.0_p01/bin/Linux-g++ is already in your
>> path variable
>> G4VERSION9_2 is set: GATE is compatible with the geant4 version 9.2
>>
>> Done
>>
>> blk at blk-desktop:/usr/share/gate/gate_v5.0.0_p01$
>> blk at blk-desktop:/usr/share/gate/gate_v5.0.0_p01$ sudo make
>> GNUmakefile:20: /variables.gmk: No such file or directory
>> GNUmakefile:22: /config/binmake.gmk: No such file or directory
>> make: *** No rule to make target `/config/binmake.gmk'.  Stop.
>>
>>
>>
>> I have tried using just make, without sudo, but then I'm getting no
>> permission errors.
>> I have seen this problem posted before but no answers. Only one answer was
>> about setting a
>> date two years back, but that did not help.
>> Any hints ?
>>
>> _______________________________________________
>> Gate-users mailing list
>> Gate-users at lists.healthgrid.org<http://mc/compose?to=Gate-users@lists.healthgrid.org>
>> http://lists.healthgrid.org/mailman/listinfo/gate-users
>>
>>
>
>
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