[Gate-users] GATEv5.00 voxelized phantom error

[Simon Stute]

Hi Jan,

>From what I know about Gate, I think that it is unfortunately impossible to
store this information.

Cheers,
Simon

On Fri, Jul 24, 2009 at 7:08 AM, Jan Mickelle V. Maratas <
jmmaratas at physics.msuiit.edu.ph> wrote:

>
> Hi all,
>
>
> Thank you very much for your help!
>
> And i am sorry, the code should be:
>  /gate/world/daughters/insert       regularMatrix
>
> Just one more newbie question regarding voxelized
> phantoms. Is it possible to record the raw hits
> informations (i.e., edep, time, position) that
> occurred in the voxelized phantom? The way I understand
> it, only volumes attached to the crystal-SD will
> produce the hits informations in the root output
> file. Would it also be possible to attach the
> voxelized phantom to the crystal-SD? Because, I
> tried this, and it did not work.
>
> The /attachVoxelPhantomSD command will attach the
> voxelized phantom to the sensitive detector, however,
> the output file will only save the dose and uncertainty
> at every voxel.
>
> Cheers to GATE and GATE users!
>
>
> Sincerely,
>
> Jan Mickelle V. Maratas
> --
> ##############################################################
>     Physics Department, MSU - Iligan Institute of Technology
>     A. Bonifacio Avenue, 9200 Iligan City, Philippines
>     Email: jmmaratas at gmail.com,
>            jmmaratas at physics.msuiit.edu.ph
> ##############################################################
>
>
> > Hi,
> >
> > As it was explained by Simon, parameterizedBoxMatrix is an obsolete
> method in the code (we must note this point in the users
> Guide....sorry).
> > The uptodate method (regarding the computing time and validation) is the
> regularMatrix.
> >
> > Cheers
> > Sebastien
> >> Hello,
> >> The error disappears when using regularMatrix, instead of
> >> parameterizedBoxMatrix.
> >> What's the difference in using regularMatrix and parametizedBoxMatrix?
> Would it be okay if I will replace the:
> >>     /gate/SPECThead/daughters/insert       parameterizedBoxMatrix
> >> with,
> >>     /gate/SPECThead/daughters/insert       regularMatrix?
> >> Sincerely,
> >> Jan Mickelle V. Maratas
> >> --
> >> ##############################################################
> >>     Physics Department, MSU - Iligan Institute of Technology
> >>     A. Bonifacio Avenue, 9200 Iligan City, Philippines
> >>     Email: jmmaratas at gmail.com,
> >>            jmmaratas at physics.msuiit.edu.ph
> >> ##############################################################
> >>> Hi,
> >>> Please, test with the example included in this email.
> >>> Normaly, it works perfectly with the V5 version
> >>> Let me know
> >>> Regards
> >>> Sebastien
> >>>> Dear gaters,
> >>>> Greetings!
> >>>> I have the same problem with Dr. Ali Asghar Parach.
> >>>> I am using a voxelized Zubal medical phantom in
> >>>> GATE for dosimetry studies. If I visualize the
> >>>> phantom using OpenGL, things seem ok. However, the
> >>>> following error occurs later part of the simulation:
> >>>> PANIC! - G4SmartVoxelHeader::BuildNodes()
> >>>>          Daughter physical volume zubalphantomVoxel_PVP
> >>>>          is entirely outside mother logical volume zubalphantom_L !!
> >>>> I also tried using the hoffman brain, but still the error appears. I
> could run my codes in GATEv4.00 with no problem.
> >>>> If anyone knows where we went wrong, please help us!
> >>>> Sincerely,
> >>>> Jan Mickelle V. Maratas,
> >>>> --
> >>>> ##############################################################
> >>>>    Physics Department, MSU - Iligan Institute of Technology
> >>>>    A. Bonifacio Avenue, 9200 Iligan City, Philippines
> >>>>    Email: jmmaratas at gmail.com,
> >>>>           jmmaratas at physics.msuiit.edu.ph
> >>>> ##############################################################
> _______________________________________________
> >>>> Gate-users mailing list
> >>>> Gate-users at lists.healthgrid.org
> >>>> http://lists.healthgrid.org/mailman/listinfo/gate-users
> >
> >
>
>
>
>
> _______________________________________________
> Gate-users mailing list
> Gate-users at lists.healthgrid.org
> http://lists.healthgrid.org/mailman/listinfo/gate-users
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20090724/00d830e8/attachment-0001.htm>