[Gate-users] Problem link gate_v5.0.0
Simon Stute
gate.stute at gmail.com
Fri Jul 24 10:34:44 CEST 2009
Hi Davi,
I don't remember how to solve it but I remember already hearing about that
trouble.
Maybe you can try to comment line 61 and 63, because the environment
variable G4ANALYSIS_USE_GENERAL is new in gate_v5 and maybe you kept your
old env_gate.sh, or forgot to source it at the first time you launched make.
Indeed, if this variable is not set before launching the make command for
the first time, the dependency files (.d) will not know to include the file
GateOutputMgr.hh (this is the line 62), and it will probably produce this
error, even if later you source the env_gate.sh file and you compile again.
So comment both lines 61 and 63 and make again.
Hope it works,
Simon
On Thu, Jul 23, 2009 at 11:13 PM, Davi Ezequiel François <
davifrancois at hotmail.com> wrote:
> Dear Simon,
>
> You are right, I have a problem in GateSteppingAction.cc when compile
> gate_v5.0.0.
>
> Compiling GateSteppingAction.cc ...
> src/GateSteppingAction.cc: In member function âG4int
> GateSteppingAction::SeekNewFile(G4bool)â:
> src/GateSteppingAction.cc:123: error: incomplete type âGateOutputMgrâ used
> in nested name specifier
> src/GateSteppingAction.cc: In member function âvirtual void
> GateSteppingAction::UserSteppingAction(const G4Step*)â:
> src/GateSteppingAction.cc:327: error: incomplete type âGateOutputMgrâ used
> in nested name specifier
> gmake[1]: *** [../../tmp/Linux-g++/Gate/GateSteppingAction.o] Error 1
> source/mandatory_G4_classes finished
>
>
> What can I do to solve my problem?
>
>
> Davi Ezequiel François
>
> NIMed - Núcleo de Pesquisas em Imagens Médicas
> Pontifícia Universidade Católica do Rio Grande do Sul
> Av. Ipiranga 6681 Prédio 96A - sala 220 - Porto Alegre - RS - Brasil CEP
> 90619-900 - Fone: (55) (51) 3320.3682 R. 7813
> http://www.pucrs.br/fisica/pesquisas/nimed/index.htm
> http://www.pucrs.br/
>
>
>
>
> ------------------------------
> Date: Thu, 23 Jul 2009 22:40:09 +0200
> Subject: Re: [Gate-users] Problem link gate_v5.0.0
> From: gate.stute at gmail.com
> To: davifrancois at hotmail.com
> CC: gate-users at lists.healthgrid.org
>
>
> Hi,
>
> Did the file GateSteppingAction.cc really successfully compile ? It seems
> that it not the case.
> If an error occured during the compilation of this file, the problem will
> be easy to solve, but else it won't !
>
> Cheers,
> Simon
>
> On Thu, Jul 23, 2009 at 10:25 PM, Davi Ezequiel François <
> davifrancois at hotmail.com> wrote:
>
> Hi Gate users,
> I am trying to install gate_v5.0.0.tar.gz on a Fedora 11 with:
> - clhep-2.0.4.2.tgz;
> - geant4.9.2.p01.tar.gz;
> - root_v5.24.00.source.tar.gz;
> - lmf_v3.0.tar.gz;
> - ecat.tar.gz.
> But I have a problem at linking Gate, see:
> source/management finished
> Creating/replacing object files in
> /usr/local/geant/gate_v5.0.0/tmp/Linux-g++/Gate/libGate.a ...
> ar: creating /usr/local/geant/gate_v5.0.0/tmp/Linux-g++/Gate/libGate.a
> Compiling Gate.cc ...
> Using granular libraries ...
> Linking Gate ...
> /usr/local/geant/gate_v5.0.0/tmp/Linux-g++/Gate/exe/Gate.o: In function
> `main':
> Gate.cc:(.text+0x1066): undefined reference to `vtable for
> GateTrackingAction'
> Gate.cc:(.text+0x10b8): undefined reference to
> `GateSteppingAction::GateSteppingAction()'
> /usr/local/geant/gate_v5.0.0/tmp/Linux-g++/Gate/libGate.a(GateEventAction.o):
> In function `GateEventAction::EndOfEventAction(G4Event const*)':
> GateEventAction.cc:(.text+0x39e): undefined reference to
> `GateSteppingAction::GetMode()'
> /usr/local/geant/gate_v5.0.0/tmp/Linux-g++/Gate/libGate.a(GateEventAction.o):
> In function `GateEventAction::BeginOfEventAction(G4Event const*)':
> GateEventAction.cc:(.text+0x273): undefined reference to
> `GateSteppingAction::GetMode()'
> /usr/local/geant/gate_v5.0.0/tmp/Linux-g++/Gate/libGate.a(GateSourceMgr.o):
> In function `GateSourceMgr::PrepareNextEvent(G4Event*)':
> GateSourceMgr.cc:(.text+0x2d28): undefined reference to
> `GateSteppingAction::GetMode()'
> /usr/local/geant/gate_v5.0.0/tmp/Linux-g++/Gate/libGate.a(GateSource.o): In
> function `GateSource::GeneratePrimaries(G4Event*)':
> GateSource.cc:(.text+0x14c8): undefined reference to
> `GateSteppingAction::GetMode()'
> GateSource.cc:(.text+0x27d8): undefined reference to
> `GateSteppingAction::SeekNewFile(bool)'
> /usr/local/geant/gate_v5.0.0/tmp/Linux-g++/Gate/libGate.a(GateToRoot.o): In
> function `GateToRoot::RecordEndOfAcquisition()':
> GateToRoot.cc:(.text+0x15b7): undefined reference to
> `GateSteppingAction::GetMode()'
> /usr/local/geant/gate_v5.0.0/tmp/Linux-g++/Gate/libGate.a(GateToRoot.o): In
> function `GateToRoot::GetCurrentTracksData()':
> GateToRoot.cc:(.text+0x2d36): undefined reference to
> `GateSteppingAction::SeekNewFile(bool)'
> /usr/local/geant/gate_v5.0.0/tmp/Linux-g++/Gate/libGate.a(GateToRoot.o): In
> function `GateToRoot::RecordEndOfEvent(G4Event const*)':
> GateToRoot.cc:(.text+0x4338): undefined reference to
> `GateSteppingAction::GetMode()'
> /usr/local/geant/gate_v5.0.0/tmp/Linux-g++/Gate/libGate.a(GateToRoot.o): In
> function `GateToRoot::RecordBeginOfEvent(G4Event const*)':
> GateToRoot.cc:(.text+0x4e23): undefined reference to
> `GateSteppingAction::GetMode()'
> /usr/local/geant/gate_v5.0.0/tmp/Linux-g++/Gate/libGate.a(GateToRoot.o): In
> function `GateToRoot::RecordBeginOfAcquisition()':
> GateToRoot.cc:(.text+0xc735): undefined reference to
> `GateSteppingAction::GetMode()'
> /usr/local/geant/gate_v5.0.0/tmp/Linux-g++/Gate/libGate.a(GateAnalysis.o):
> In function `GateAnalysis::RecordEndOfEvent(G4Event const*)':
> GateAnalysis.cc:(.text+0x1bd9): undefined reference to
> `GateSteppingAction::GetMode()'
> /usr/local/geant/gate_v5.0.0/tmp/Linux-g++/Gate/libGate.a(GateGeneralParticleSource.o):
> In function `GateGeneralParticleSource::GeneratePrimaryVertex(G4Event*)':
> GateGeneralParticleSource.cc:(.text+0x115e2): undefined reference to
> `GateSteppingAction::GetMode()'
> /usr/local/geant/gate_v5.0.0/tmp/Linux-g++/Gate/libGate.a(GateTrajectoryNavigator.o):GateTrajectoryNavigator.cc:(.text+0xa28):
> more undefined references to `GateSteppingAction::GetMode()' follow
> collect2: ld returned 1 exit status
> gmake: *** [/usr/local/geant/gate_v5.0.0/bin/Linux-g++/Gate] Error 1
>
>
> I checked my environment settings and are ok, see.
> export G4INSTALL=/usr/local/geant/geant4.9.2.p01
> export G4WORKDIR=/usr/local/geant/gate_v5.0.0
> export ROOTSYS=/usr/local/geant/root
> export PATH=$ROOTSYS/bin:$PATH
> export LMF_HOME=/usr/local/geant/lmf_v3.0
> export ECAT7_HOME=/usr/local/geant/ecat
> export G4VERSION=9.2
> export GATEHOME=/usr/local/geant/gate_v5.0.0
> export LD_LIBRARY_PATH=/usr/local/lib:$ROOTSYS/lib:$export LD_LIBRARY_PATH
>
> Can anyone help or know what’s happening?
> Thanks,
>
> Davi Ezequiel François
>
> NIMed - Núcleo de Pesquisas em Imagens Médicas
> Pontifícia Universidade Católica do Rio Grande do Sul
> Av. Ipiranga 6681 Prédio 96A - sala 220 - Porto Alegre - RS - Brasil CEP
> 90619-900 - Fone: (55) (51) 3320.3682 R. 7813
> http://www.pucrs.br/fisica/pesquisas/nimed/index.htm
> http://www.pucrs.br/
>
>
>
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