[Gate-users] ECAT output problem

ljlubme ljlubme at 163.com
Mon Aug 24 04:07:55 CEST 2009


Dear all users,

I am a beginner in GATE.
(CLHEP 2.0.3.2 / Geant4 9.1 / root 5.22 / gate4.0.0)

 I am trying to obtain sinogram data from "PET_Ecat_System.mac" example.
--------------------------next part-------------------------
*************************************************************
 Geant4 version Name: geant4-09-01-patch-02    (9-May-2008)
                      Copyright : Geant4 Collaboration
                      Reference : NIM A 506 (2003), 250-303
                            WWW : http://cern.ch/geant4
*************************************************************

Visualization Manager instantiating...
Visualization Manager initialising...
Registering graphics systems...

You have successfully registered the following graphics systems.
Current available graphics systems are:
  ASCIITree (ATree)
  DAWNFILE (DAWNFILE)
  G4HepRep (HepRepXML)
  G4HepRepFile (HepRepFile)
  RayTracer (RayTracer)
  VRML1FILE (VRML1FILE)
  VRML2FILE (VRML2FILE)
  OpenGLImmediateX (OGLIX)
  OpenGLStoredX (OGLSX)
  RayTracerX (RayTracerX)

Registering model factories...

You have successfully registered the following model factories.
Registered model factories:................................................
...........................................................................
...........................................................................

GATE object:        'digitizer/Coincidences'
Is enabled?         Yes
Coincidence window: 10 ns
Coincidence window jitter: 0 ps
Coincidence offset: 0 ps
Coincidence offset jitter: 0 ps
Min sector diff.:   2
Input:              'Singles'
Output:             'Coincidences'

GATE object:        'digitizer/delay'
Is enabled?         Yes
Coincidence window: 10 ns
Coincidence window jitter: 0 ps
Coincidence offset: 500 ns
Coincidence offset jitter: 0 ps
Min sector diff.:   2
Input:              'Singles'
Output:             'delay'

GATE object:        'digitizer/finalCoinc'
Is enabled?         Yes
Nb of elements:     0
Attached to:        'digitizer'
Output:             'finalCoinc'

Output module: 'sinogram'
 >> Job:                                 build a set of 2D sinograms from a PET simulation
 >> Is enabled ?                         Yes
 >> Number of crystals per crystal ring: 0
 >> Number of crystal rings:             0
 >> Number of radial sinogram bins:      0
 >> Filled ?                             No
 >> Attached to system:                  systems/ecat
***** COMMAND NOT FOUND </gate/output/ecat7/setFileName yourSinogram> *****

***** Batch is interupted!! *****
---------------------------------------------------------------------------------------------------

My environment is set as follows:
**************************************************************************
export G4VERSION=9.1
export G4INSTALL=/usr/local/gate/gate_v4.0.0/geant4.9.1.p02
export LMF_HOME=/usr/local/gate/gate_v4.0.0/lmf_v3.0
export LD_LIBRARY_PATH=/usr/local/gate/gate_v4.0.0/root_v5.22.00h/root/lib:/usr/local/gate/gate_v4.0.0/CLHEP-2.0.3.2/lib:/usr/local/gate/gate_v4.0.0/gate_v4.0.0/tmp/Linux-g++/Gate:/usr/local/gate/gate_v4.0.0/ECAT/lib:${LD_LIBRARY_PATH}
export PATH=/usr/local/gate/gate_v4.0.0/root_v5.22.00h/root/bin:/usr/local/gate/gate_v4.0.0/gate_v4.0.0/bin/Linux-g++:${PATH}
export GATEHOME=/usr/local/gate/gate_v4.0.0/gate_v4.0.0
export ROOTSYS=/usr/local/gate/gate_v4.0.0/root_v5.22.00h/root
export ECAT7_HOME=/usr/local/gate/gate_v4.0.0/ECAT
***************************************************************************
Configuring GATE options

G4WORKDIR set to .
G4TMP set to ./tmp
G4BIN set to ./bin
Data analysis and output features enabled
Ascii data output enabled
Transport and generation of optical photons is enabled
Checking your LD_LIBRARY_PATH variable...
 ==> OK: /usr/local/gate/gate_v4.0.0/root_v5.22.00h/root/lib is already in your LD_LIBRARY_PATH
Use of ROOT enabled
ROOT real-time plotter disabled
Checking your LD_LIBRARY_PATH variable...
 ==> OK: /usr/local/gate/gate_v4.0.0/lmf_v3.0/lib is already in your LD_LIBRARY_PATH
LMF data output enabled
ECAT7 data output enabled
GATEHOME is set to /usr/local/gate/gate_v4.0.0/gate_v4.0.0
Checking your path variable...
 ==> OK: /usr/local/gate/gate_v4.0.0/gate_v4.0.0/bin/Linux-g++ is already in your path variable
G4VERSION9 is set: GATE is compatible with the geant4 version 9.1


and the 'libecat.a' file is in the '/usr/local/gate/gate_v4.0.0/ECAT/lib/Linux-g++'.
'machine_indep.h' and 'matrix.h' are in the '/usr/local/gate/gate_v4.0.0/ECAT/include'
I don't know where is the error, who can help me?
thanks
lijunlu
Southern Medical University ,China
ljlubme at 163.com 
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