[Gate-users] unsubscribe please
Dugan, Peter
peter.dugan at lmco.com
Mon Aug 10 12:40:43 CEST 2009
Peter Dugan, Ph.D.
607.751.6161
607.751.6878
Lockheed Martin - Distribution Technologies ms 0315
1801 State Route 17C
Owego, NY 13827
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Sent: Sunday, August 09, 2009 6:00 AM
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Subject: Gate-users Digest, Vol 39, Issue 9
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Today's Topics:
1. Link (???)
2. Install Gate5 : Link error (???)
----------------------------------------------------------------------
Message: 1
Date: Sun, 9 Aug 2009 17:24:35 +0800
From: ??? <caoxiaoqing2008 at gmail.com>
Subject: [Gate-users] Link
To: gate-users at lists.healthgrid.org
Message-ID:
<71da7d780908090224k513ea682ya60d62300b77f424 at mail.gmail.com>
Content-Type: text/plain; charset="iso-8859-1"
*Hi, dear all
Trying to install gate_v5.0.0 with Geant4.9.2.p01 on CentOS 5 The
CLHEP(version 2.0.4.2), geant4.9.2.p01, root_v5.24.00 and lmf_v3.0 were
installed successfully But when I "make" in the install gate_5.0.0
directory, I got error when linking gate :*
Linking Gate ...
./tmp/Linux-g++/Gate/libGate.a(GateToRoot.o):(.rodata._ZTV14GateSingleTr
ee[vtable
for GateSingleTree]+0x15c): undefined reference to
`TTree::CopyAddresses(TTree*)'
./tmp/Linux-g++/Gate/libGate.a(GateToRoot.o):(.rodata._ZTV13GateCoincTre
e[vtable
for GateCoincTree]+0x15c): undefined reference to
`TTree::CopyAddresses(TTree*)'
./tmp/Linux-g++/Gate/libGate.a(GateToRoot.o):(.rodata._ZTV11GateHitTree[
vtable
for GateHitTree]+0x15c): undefined reference to
`TTree::CopyAddresses(TTree*)'
collect2: ld return 1
make: *** [bin/Linux-g++/Gate] error 1
*my environment settings:
source env_gate.csh and root.csh*
Launching Geant4 configuration script
/home/cxq/gate5/geant4/geant4.9.2.p01/env.csh
On this machine the G4SYSTEM=Linux-g++
On this machine the G4INSTALL=/home/cxq/gate5/geant4/geant4.9.2.p01
On this machine the G4LIB=/home/cxq/gate5/geant4/geant4.9.2.p01/lib
On this machine the
G4LEVELGAMMADATA=/home/cxq/gate5/geant4/geant4.9.2.p01/data/PhotonEvapor
ation2.0
On this machine the
G4RADIOACTIVEDATA=/home/cxq/gate5/geant4/geant4.9.2.p01/data/Radioactive
Decay3.2
On this machine the
G4LEDATA=/home/cxq/gate5/geant4/geant4.9.2.p01/data/G4EMLOW6.2
On this machine the
G4NEUTRONHPDATA=/home/cxq/gate5/geant4/geant4.9.2.p01/data/G4NDL3.13
On this machine the
G4ABLADATA=/home/cxq/gate5/geant4/geant4.9.2.p01/data/G4ABLA3.0
On this machine the CLHEP_BASE_DIR=/home/cxq/gate5/geant4/CLHEP
On this machine the
CLHEP_INCLUDE_DIR=/home/cxq/gate5/geant4/CLHEP/include
On this machine the CLHEP_LIB_DIR=/home/cxq/gate5/geant4/CLHEP/lib
On this machine the CLHEP_LIB=CLHEP
On this machine the G4VIS_BUILD_OPENGLX_DRIVER=1 On this machine the
G4VIS_BUILD_RAYTRACERX_DRIVER=1 On this machine the G4VIS_USE_OPENGLX=1
On this machine the G4VIS_USE_RAYTRACERX=1 On this machine the XMFLAGS=
On this machine the XMLIBS= On this machine the XMFLAGS= On this machine
the XMLIBS= On this machine the XAWFLAGS= On this machine the XAWLIBS=
On this machine the G4LIB_BUILD_STATIC=1 On this machine the
G4LIB_USE_GRANULAR=1 On this machine the G4UI_USE_TCSH=1 In your
environment you have the G4WORKDIR=.
Configuring GATE options
G4WORKDIR set to .
G4TMP set to ./tmp
G4BIN set to ./bin
Data analysis and output features enabled Ascii data output enabled
Transport and generation of optical photons is enabled Checking your
LD_LIBRARY_PATH variable...
==> OK: /home/cxq/gate5/root/lib is already in your LD_LIBRARY_PATH Use
of ROOT enabled ROOT real-time plotter disabled LMF data output disabled
ECAT7 data output disabled
GATEHOME is set to /home/cxq/gate5/gate_v5.0.0 Checking your path
variable...
==> OK: /home/cxq/gate5/gate_v5.0.0/bin/Linux-g++ is already in your
path variable
G4VERSION9_2 is not set
This GATE version only works with Geant4.9.1
Done
*and my root.csh file is :*
setenv ROOTSYS
setenv LD_LIBRARY_PATH
setenv ROOTSYS /home/cxq/gate5/root
setenv LD_LIBRARY_PATH ${ROOTSYS}/bin:${LD_LIBRARY_PATH}
*Can anyone help or know what is happening?
Thanks very much !*
--
Xiaoqing.Cao
School of Mathematics and Statistics, Huazhong Univ. of Sci. & Tech.
1037 Luoyu Road, Wuhan 430074, P. R. China Tel : 13297955461
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Message: 2
Date: Sun, 9 Aug 2009 17:26:21 +0800
From: ??? <caoxiaoqing2008 at gmail.com>
Subject: [Gate-users] Install Gate5 : Link error
To: gate-users <gate-users at lists.healthgrid.org>
Message-ID:
<71da7d780908090226g6f517d41x4f87336efeaf2b0a at mail.gmail.com>
Content-Type: text/plain; charset="iso-8859-1"
*Hi, dear all
Trying to install gate_v5.0.0 with Geant4.9.2.p01 on CentOS 5 The
CLHEP(version 2.0.4.2), geant4.9.2.p01, root_v5.24.00 and lmf_v3.0 were
installed successfully But when I "make" in the install gate_5.0.0
directory, I got error when linking gate :*
Linking Gate ...
./tmp/Linux-g++/Gate/libGate.a(GateToRoot.o):(.rodata._ZTV14GateSingleTr
ee[vtable
for GateSingleTree]+0x15c): undefined reference to
`TTree::CopyAddresses(TTree*)'
./tmp/Linux-g++/Gate/libGate.a(GateToRoot.o):(.rodata._ZTV13GateCoincTre
e[vtable
for GateCoincTree]+0x15c): undefined reference to
`TTree::CopyAddresses(TTree*)'
./tmp/Linux-g++/Gate/libGate.a(GateToRoot.o):(.rodata._ZTV11GateHitTree[
vtable
for GateHitTree]+0x15c): undefined reference to
`TTree::CopyAddresses(TTree*)'
collect2: ld return 1
make: *** [bin/Linux-g++/Gate] error 1
*my environment settings:
source env_gate.csh and root.csh*
Launching Geant4 configuration script
/home/cxq/gate5/geant4/geant4.9.2.p01/env.csh
On this machine the G4SYSTEM=Linux-g++
On this machine the G4INSTALL=/home/cxq/gate5/geant4/geant4.9.2.p01
On this machine the G4LIB=/home/cxq/gate5/geant4/geant4.9.2.p01/lib
On this machine the
G4LEVELGAMMADATA=/home/cxq/gate5/geant4/geant4.9.2.p01/data/PhotonEvapor
ation2.0
On this machine the
G4RADIOACTIVEDATA=/home/cxq/gate5/geant4/geant4.9.2.p01/data/Radioactive
Decay3.2
On this machine the
G4LEDATA=/home/cxq/gate5/geant4/geant4.9.2.p01/data/G4EMLOW6.2
On this machine the
G4NEUTRONHPDATA=/home/cxq/gate5/geant4/geant4.9.2.p01/data/G4NDL3.13
On this machine the
G4ABLADATA=/home/cxq/gate5/geant4/geant4.9.2.p01/data/G4ABLA3.0
On this machine the CLHEP_BASE_DIR=/home/cxq/gate5/geant4/CLHEP
On this machine the
CLHEP_INCLUDE_DIR=/home/cxq/gate5/geant4/CLHEP/include
On this machine the CLHEP_LIB_DIR=/home/cxq/gate5/geant4/CLHEP/lib
On this machine the CLHEP_LIB=CLHEP
On this machine the G4VIS_BUILD_OPENGLX_DRIVER=1 On this machine the
G4VIS_BUILD_RAYTRACERX_DRIVER=1 On this machine the G4VIS_USE_OPENGLX=1
On this machine the G4VIS_USE_RAYTRACERX=1 On this machine the XMFLAGS=
On this machine the XMLIBS= On this machine the XMFLAGS= On this machine
the XMLIBS= On this machine the XAWFLAGS= On this machine the XAWLIBS=
On this machine the G4LIB_BUILD_STATIC=1 On this machine the
G4LIB_USE_GRANULAR=1 On this machine the G4UI_USE_TCSH=1 In your
environment you have the G4WORKDIR=.
Configuring GATE options
G4WORKDIR set to .
G4TMP set to ./tmp
G4BIN set to ./bin
Data analysis and output features enabled Ascii data output enabled
Transport and generation of optical photons is enabled Checking your
LD_LIBRARY_PATH variable...
==> OK: /home/cxq/gate5/root/lib is already in your LD_LIBRARY_PATH Use
of ROOT enabled ROOT real-time plotter disabled LMF data output disabled
ECAT7 data output disabled
GATEHOME is set to /home/cxq/gate5/gate_v5.0.0 Checking your path
variable...
==> OK: /home/cxq/gate5/gate_v5.0.0/bin/Linux-g++ is already in your
path variable
G4VERSION9_2 is not set
This GATE version only works with Geant4.9.1
Done
*and my root.csh file is :*
setenv ROOTSYS
setenv LD_LIBRARY_PATH
setenv ROOTSYS /home/cxq/gate5/root
setenv LD_LIBRARY_PATH ${ROOTSYS}/bin:${LD_LIBRARY_PATH}
*Can anyone help or know what is happening?
Thanks very much !*
--
Xiaoqing.Cao
School of Mathematics and Statistics, Huazhong Univ. of Sci. & Tech.
1037 Luoyu Road, Wuhan 430074, P. R. China Tel : 13297955461
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