[Gate-users] Problems with compiling GATE

[Zhibin Huang]

Recently I successfully installed Gate under Ubuntu8.04 when I used
ROOT5.19. It seems that in Ubntu8.04, ROOT5.14 can't be compiled
successfully.

Before you install GATE, you have to modify the GNUmake file. As a
reference, please see the attachment and modify the path properly. My
webpage may also be useful for both Gate installation and Ubuntu8.04
configuration:
please search for GATE under the link:
https://filer.case.edu/~zxh6/data/daily-log

Good luck!

On Fri, Jul 25, 2008 at 1:43 PM, franklin pereira <pnicholasf at gmail.com>
wrote:

> Hi,
>
> I have a Dell Vostro ( intel core duo processor) with Ubuntu 8.04
> installed.
> The default version of the gcc compiler is 4.2.3
>
> I recently downloaded Gate3.1.2, Geant4 (version 9.0), ROOT (5.14).
>
> Geant4 compiled without any problems.
>
> However, I am having problems with compiling ROOT-5.14.
> I get tons of warnings and then the compilation aborts with the
> following error message:
>
>
> *************************************************************************************************************************
> >>  bin/rmkdepend -R -fcint/src/gcc3strm.d -Y -w 1000 -- -pipe -m32 -Wall
> -W -Woverloaded-virtual -fPIC -Iinclude  -DG__REGEXP -DG__UNIX
> -DG__SHAREDLIB -DG__OSFDLL -DG__ROOT -DG__REDIRECTIO -DG__STD_EXCEPTION
> -DG__HAVE_CONFIG -DG__NOMAKEINFO -DG__CINTBODY -Icint/src -pthread
> -Icint/lib/gcc3strm -D__cplusplus -- cint/src/gcc3strm.cxx
> g++ -O  -pipe -m32 -Wall -W -Woverloaded-virtual -fPIC -Iinclude
> -DG__REGEXP -DG__UNIX -DG__SHAREDLIB -DG__OSFDLL -DG__ROOT
> -DG__REDIRECTIO -DG__STD_EXCEPTION -DG__HAVE_CONFIG -DG__NOMAKEINFO
> -DG__CINTBODY -Icint/src -pthread -Icint/lib/gcc3strm -o
> cint/src/gcc3strm.o -c cint/src/gcc3strm.cxx
> cint/src/gcc3strm.cxx: In function 'int G__G__stream_7_7_0(G__value*,
> const char*, G__param*, int)':
> cint/src/gcc3strm.cxx:311: error: 'class std::fpos<__mbstate_t>' has
> no member named 'operator=='
> cint/src/gcc3strm.cxx: In function 'int G__G__stream_7_8_0(G__value*,
> const char*, G__param*, int)':
> cint/src/gcc3strm.cxx:317: error: 'class std::fpos<__mbstate_t>' has
> no member named 'operator!='
> make: *** [cint/src/gcc3strm.o] Error 1
>
> *************************************************************************************************************************
>
>
> ROOT 5.20, however, compiles cleanly, but gate will not compile with
> this version of ROOT as is cannot find the proper function
> declarations for the various ROOT functions ( the header files are in
> /root/include and this is passed on to the g++ compiler correctly
> in the GATE makefile ).
>
>
> A sample of these error messages are:
>
>
> **************************************************************************************************************
> >>Using global libraries ...
> Linking Gate ...
>
> /opt/Geant4/geant4.9.0.p02/tmp/Linux-g++/Gate/libGate.a(GateHitFileReader.o):
> In function `GateHitFileReader::PrepareAcquisition()':
> GateHitFileReader.cc:(.text+0x102a): undefined reference to
> `TFile::TFile(char const*, char const*, char const*, int)'
> /opt/Geant4/geant4.9.0.p02/tmp/Linux-g++/Gate/libGate.a(GateToRoot.o):
> In function `GateToRoot::RecordVoxels(GateVGeometryVoxelStore*)':
> GateToRoot.cc:(.text+0xe47): undefined reference to `TFile::TFile(char
> const*, char const*, char const*, int)'
> /opt/Geant4/geant4.9.0.p02/tmp/Linux-g++/Gate/libGate.a(GateToRoot.o):
> In function `GateToRoot::RecordBeginOfAcquisition()':
> GateToRoot.cc:(.text+0x3fd3): undefined reference to
> `TFile::TFile(char const*, char const*, char const*, int)'
> GateToRoot.cc:(.text+0x423b): undefined reference to
> `TFile::TFile(char const*, char const*, char const*, int)'
> /opt/root/lib/libTree.so: undefined reference to
> `TFileCacheRead::TFileCacheRead(TFile*, int)'
> /opt/root/lib/libTree.so: undefined reference to `TFile::GetCacheRead()
> const'
> /opt/root/lib/libTree.so: undefined reference to
> `TBufferFile::WriteClones(TClonesArray*, int)'
> /opt/root/lib/libTree.so: undefined reference to
> `TBufferFile::WriteArray(float const*, int)'
> /opt/root/lib/libTree.so: undefined reference to
> `TSQLRow::Streamer(TBuffer&)'
> /opt/root/lib/libTree.so: undefined reference to
> `TBufferFile::WriteVersion(TClass const*, bool)'
> /opt/root/lib/libHist.so: undefined reference to
> `ROOT::Fit::BinData::Initialize(unsigned int, unsigned int,
> ROOT::Fit::BinData::ErrorType)'
> /opt/root/lib/libTree.so: undefined reference to `typeinfo for TSQLResult'
> /opt/root/lib/libTree.so: undefined reference to
> `TBufferFile::ReadObject(TClass const*)'
> /opt/root/lib/libTree.so: undefined reference to `TKey::Create(int,
> TFile*)'
>
> ********************************************************************************************************************
>
>
> My guess is that the function declarations in ROOT5.20 have changed
> from version 5.14, therefore the conflict.
> However, I am clueless regarding the compilation errors generated
> while trying to compile ROOT-5.14.
> Is this due to the newer version of gcc that comes with the Ubuntu OS
> ? I am at a loss and would appreciate help regarding this.
>
> Thanks a lot,
> Franklin.
> _______________________________________________
> Gate-users mailing list
> Gate-users at lists.healthgrid.org
> http://lists.healthgrid.org/mailman/listinfo/gate-users
>
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