[Gate-users] GATE and GEANT Install

[Simon Stute]

Hi,

I made the modification in the variables.gmk file (that is used by the
GNUmakefile of Gate).
Just replace the old file by this new one and recompile Gate.

(I just replaced the manual ROOT library links by a call of the program
root-config with the option --libs).

Hope it will work,
Simon

2008/12/19 TienGarry <gjtian at hotmail.com>

>  When I make GATE4.0 I get the link errors:
>
> Linking Gate ...
> /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to
> `TBufferFile::ReadArray(double*&)'
> /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to
> `TBufferFile::SetReadParam(int)'
> /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to
> `TThread::TThread(char const*, void* (*)(void*), void*, TThread::EPriority)'
> /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to
> `TBufferFile::WriteArray(float const*, int)'
> /home/gary/GATE4.0/root/lib/libHist.so: undefined reference to
> `ROOT::Math::GaussIntegrator::GaussIntegrator()'
> /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `typeinfo
> for TSQLResult'
> /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `vtable for
> TSQLRow'
> /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to
> `TBufferFile::GetLastProcessID(TRefTable*) const'
> /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to
> `TBufferFile::GetTRefExecId()'
> /home/gary/GATE4.0/root/lib/libHist.so: undefined reference to
> `TMath::ErfInverse(double)'
> /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to
> `TBufferFile::WriteObjectClass(void const*, TClass const*)'
> /home/gary/GATE4.0/root/lib/libHist.so: undefined reference to
> `TMath::Beta(double, double)'
> /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to
> `TBufferFile::ReadVersion(unsigned int*, unsigned int*, TClass const*)'
> /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to
> `TBufferFile::WriteArray(long const*, int)'
> /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to
> `TThread::Run(void*)'
> /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to
> `TBufferFile::WriteProcessID(TProcessID*)'
> /home/gary/GATE4.0/root/lib/libHist.so: undefined reference to
> `ROOT::Math::BrentMinimizer1D::~BrentMinimizer1D()'
> /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to
> `TBufferFile::WriteVersionMemberWise(TClass const*, bool)'
> /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to
> `TKey::Hash() const'
> /home/gary/GATE4.0/root/lib/libHist.so: undefined reference to `gRandom'
> /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `typeinfo
> for TSQLRow'
> /home/gary/GATE4.0/root/lib/libHist.so: undefined reference to
> `ROOT::Math::RootFinder::RootFinder(ROOT::Math::RootFinder::EType)'
> /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `int
> TStreamerInfo::ReadBuffer<char**>(TBuffer&, char** const&, int, int, int,
> int)'
> /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to
> `TBufferFile::ReadStaticArray(long*)'
> /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to
> `TKey::Streamer(TBuffer&)'
> /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to
> `TStreamerInfo::ReadBufferClones(TBuffer&, TClonesArray*, int, int, int)'
> /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to
> `TMutex::TMutex(bool)'
> /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to
> `TBufferFile::WriteObject(TObject const*)'
> /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to
> `TBufferFile::WriteArray(int const*, int)'
> /home/gary/GATE4.0/root/lib/libHist.so: undefined reference to
> `TMath::BesselK0(double)'
> /home/gary/GATE4.0/root/lib/libTree.so: undefined reference to
> `TMessage::Class()'
> /home/gary/GATE4.0/root/lib/libHist.so: undefined reference to
> `TMath::StruveH0(double)'
> collect2: ld returned 1 exit status
> make: *** [bin/Linux-g++/Gate] Error 1
>
> I search this error, some got the same errors with me, when he make a
> program based on ROOT,
>
>
> http://root.cern.ch/phpBB2/viewtopic.php?t=7404&view=next&sid=da48524ef4f7180111d474d40b64e1f8
>
> Someone answer the question like this:
>
> You need to link against the libraries you use. Call `root-config --libs`
> instead of -lWhatever in your Makefile.
>
> How can I solve it for gate, how to modify gate makefile?
> Thx.
>
> ------------------------------
> To: gjtian at hotmail.com; gate.stute at gmail.com
> Subject: Re : [Gate-users] GATE and GEANT Install
> Date: Thu, 18 Dec 2008 07:58:50 -0500
> From: dounia84 at aol.com
> CC: gate-users at lists.healthgrid.org
>
>  Hello,
> i am having some pb with ecat7 output. Although gate tells me that ecat7
> output is enabled i still get :
>  Output module: 'sinogram'
>  >> Job:                                 build a set of 2D sinograms from a
> PET simulation
>  >> Is enabled ?                         Yes
>  >> Number of crystals per crystal ring: 0
>  >> Number of crystal rings:             0
>  >> Number of radial sinogram bins:      0
>  >> Filled ?                             No
>  >> Attached to system:                  systems/ecat
>  >> Input data:
> finalCoinc/gate/output/ecat7/enable
> ***** COMMAND NOT FOUND </gate/output/ecat7/enable> *****
>
> ***** Batch is interupted!! *****
>
>
> I don`t get why i have zero crystals...
>  If you had this problem already please tell me what you did to solve it.
> It has been a long long time that i  am stuck with this!
> thank you in advance.
> Dounia Taleb.
>
> ------------------------------
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