[Gate-users] GATE and GEANT Install

[Simon Stute]

Hi,

Just install the libxml2 library and its headers, recompile Gate and it will
be ok, finally !

Cheers,
Simon

On Thu, Dec 18, 2008 at 2:50 AM, TienGarry <gjtian at hotmail.com> wrote:

>  Hi, ALL
>
> I installed geant, root, clhep, and lmf3.0 successfully. After the geant4
> installation, I can find the env.sh script file in two paths in my
> system.
> /home/gary/GATE4.0/geant4.9.1.p03/.config/bin/Linux-g++
> /home/gary/GATE4.0/geant4.9.1.p03/install/src/geant4/.config/bin/Linux-g++
>
> when I type
> gary at polyu-gary:~/GATE4.0/geant4.9.1.p03$ source
> /home/gary/GATE4.0/geant4.9.1.p03/.config/bin/Linux-g++
> or
> gary at polyu-gary:~/GATE4.0/geant4.9.1.p03$ source
> /home/gary/GATE4.0/geant4.9.1.p03/install/src/geant4/.config/bin/Linux-g++/env.sh
>
> I can get the following information:
>
> On this machine the G4SYSTEM=Linux-g++
> On this machine the
> G4INSTALL=/home/gary/GATE4.0/geant4.9.1.p03/install/src/geant4
> On this machine the
> G4LIB=/home/gary/GATE4.0/geant4.9.1.p03/install/lib/geant4
> On this machine the
> G4LEVELGAMMADATA=/home/gary/GATE4.0/geant4.9.1.p03/data/PhotonEvaporation2.0
> On this machine the
> G4RADIOACTIVEDATA=/home/gary/GATE4.0/geant4.9.1.p03/data/RadioactiveDecay3.2
> On this machine the
> G4LEDATA=/home/gary/GATE4.0/geant4.9.1.p03/data/G4EMLOW5.1
> On this machine the
> G4NEUTRONHPDATA=/home/gary/GATE4.0/geant4.9.1.p03/data/G4NDL3.12
> On this machine the
> G4ABLADATA=/home/gary/GATE4.0/geant4.9.1.p03/data/G4ABLA3.0
> On this machine the CLHEP_BASE_DIR=/home/gary/GATE4.0/CLHEP/install
> On this machine the
> CLHEP_INCLUDE_DIR=/home/gary/GATE4.0/CLHEP/install/include
> On this machine the CLHEP_LIB_DIR=/home/gary/GATE4.0/CLHEP/install/lib
> On this machine the CLHEP_LIB=CLHEP
> On this machine the G4VIS_BUILD_RAYTRACERX_DRIVER=1
> On this machine the G4VIS_USE_RAYTRACERX=1
> On this machine the XMFLAGS=
> On this machine the XMLIBS=
> On this machine the XMFLAGS=
> On this machine the XAWFLAGS=
> On this machine the XAWLIBS=
> On this machine the G4LIB_BUILD_SHARED=1
> On this machine the G4LIB_USE_GRANULAR=1
> On this machine the G4UI_USE_TCSH=1
>
> LD_LIBRARY_PATH is set to include CLHEP and Geant4 libraries.
>
> NOTE : verify that the correct path for the CLHEP library
> - $CLHEP_BASE_DIR/lib - is included in the $LD_LIBRARY_PATH
> variable in your environment, and no other outdated installations
> of CLHEP are by chance referenced through $LD_LIBRARY_PATH and
> present in your system !
>
> But for my gate4 installation, I follow the guide,
> gary at polyu-gary:~/GATE4.0/gate_v4.0.0$ exprot G4VERSION=9.1
> then copy geant env.sh file into path
> G4INSTALL=/home/gary/GATE4.0/geant4.9.1.p03/install/src/geant4,
> then type
> gary at polyu-gary:~/GATE4.0/gate_v4.0.0$ source env_gate.sh
> I can get:
>
> G4WORKDIR set to .
> G4TMP set to ./tmp
> G4BIN set to ./bin
> Data analysis and output features enabled
> Ascii data output enabled
> Transport and generation of optical photons is enabled
> Use of ROOT disabled
> ROOT real-time plotter disabled
> LMF data output disabled
> ECAT7 data output disabled
> GATEHOME is set to /home/gary/GATE4.0/gate_v4.0.0
> Checking your path variable...
>  ==> OK: /home/gary/GATE4.0/gate_v4.0.0/bin/Linux-g++ is already in your
> path variable
> G4VERSION9 is set: GATE is compatible with the geant4 version 9.1
>
> Done
>
> gary at polyu-gary:~/GATE4.0/gate_v4.0.0$ make
> I get the following errors.
>
> Entering source/geometry ...
> Making dependency for file src/GateSurface.cc ...
> /bin/sh: xml2-config: not found
> In file included from src/GateSurface.cc:18:
> ../management/include/GateXMLDocument.hh:19:30: error: libxml/xmlmemory.h:
> No such file or directory
> ../management/include/GateXMLDocument.hh:20:27: error: libxml/parser.h: No
> such file or directory
> Compiling GateSurface.cc ...
> /bin/sh: xml2-config: not found
> In file included from src/GateSurface.cc:18:
> ../management/include/GateXMLDocument.hh:19:30: error: libxml/xmlmemory.h:
> No such file or directory
> ../management/include/GateXMLDocument.hh:20:27: error: libxml/parser.h: No
> such file or directory
> In file included from src/GateSurface.cc:18:
> ../management/include/GateXMLDocument.hh:28: error: 'xmlNodePtr' does not
> name a type
> ../management/include/GateXMLDocument.hh:62: error: 'xmlDocPtr' does not
> name a type
> ../management/include/GateXMLDocument.hh:63: error: 'xmlNodePtr' does not
> name a type
> /home/gary/GATE4.0/CLHEP/install/include/CLHEP/Units/PhysicalConstants.h:78:
> warning: 'CLHEP::electron_charge' defined but not used
> make[1]: *** [../../tmp/Linux-g++/Gate/GateSurface.o] Error 1
> source/geometry finished
> Entering source/digitizer ...
> make[1]: Nothing to be done for `obj'.
> source/digitizer finished
> Entering source/output ...
> make[1]: Nothing to be don
>
> If I define $ROOT_SYS and $LMF_HOME, I still can not make gate sucessfully.
>
> Pls help me, guys, I spent a lot of time on it, but can not make it. This
> is the
> last step for me to become a real GATE USER.
>
> Thank you so much.
>
>
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