[Gate-users] Re: Gate-users Digest, Vol 14, Issue 13

Thu Jul 12 15:04:06 CEST 2007

Hi Gaters,

Has anyone figured out why spatial blurring does not seem to take place 
in the interfile output? While blurring is evident in ASCII and ROOT 
output, no changes are seen in the interfile. Moreover, could anyone 
tell me what I must do to get it working? It would be nice to rely on 
this output form for its size and simplicity.

Thanks,

Ben McDonald

gate-users-request at lists.healthgrid.org wrote:
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> Today's Topics:
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>    1. Re: Problems making LMF examples (Simon Stute)
>    2. [Fwd: FW: postdoctoral position in radiotherapy] (Sebastien JAN)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Mon, 9 Jul 2007 12:26:27 +0200
> From: "Simon Stute" <gate.stute at gmail.com>
> Subject: Re: [Gate-users] Problems making LMF examples
> To: "Marc Chamberland" <mchamber at physics.carleton.ca>
> Cc: gate-users at lists.healthgrid.org
> Message-ID:
> 	<38e368330707090326j3590120foe125206dbd2b1cd at mail.gmail.com>
> Content-Type: text/plain; charset="iso-8859-1"
>
> Hi,
>
> Don't worry about the examples. I got the same thing, however I tried with
> Gate and it worked fine.
> But there is a precision to notice : the storage of Singles works fine but
> not for Coincidences, and it is not mentioned in the manual. They just says
> that you must put the boolean command for lmf coincidences to 0 ... you can
> see yourself in the section 10.
> I personally use the lmf output to store coincidences but I modified the
> GateToLMF class to get what I want.
>
> So good luck if you really want to use this format !!
> Cheers
> Simon
>
> 2007/7/8, Marc Chamberland <mchamber at physics.carleton.ca >:
>   
>> Hi!
>>
>> I'm having problems installing LMF v.3.0. I'm following the instructions
>> in LMF.pdf included with the source code. In LMF/, I can compile the
>> library correctly, I think. However, when I try to compile the examples, I
>> get the following output:
>>
>> Maya:/Applications/lmf_v3.0/examples Marc$ make
>> gcc -I../includes/ -D_FILE_OFFSET_BITS=64   -c -o exempleMain_01.o
>> exempleMain_01.c
>> gcc -o EXE_01 exempleMain_01.o -I../includes/ -L../lib/ -lLMF
>> -L/Applications/root/lib -lCore -lCint -lHist -lGraf -lGraf3d -lGpad
>> -lTree -lRint -lPostscript -lMatrix -lPhysics -lfreetype -lpthread -lm
>> -ldl
>> example 1 : EXE_01 ok...
>> gcc -I../includes/ -D_FILE_OFFSET_BITS=64   -c -o exempleMain_02.o
>> exempleMain_02.c
>> gcc -o EXE_02 exempleMain_02.o -I../includes/ -L../lib/ -lLMF
>> -L/Applications/root/lib -lCore -lCint -lHist -lGraf -lGraf3d -lGpad
>> -lTree -lRint -lPostscript -lMatrix -lPhysics -lfreetype -lpthread -lm
>> -ldl
>> example 2 : EXE_02 ok...
>> gcc -I../includes/ -D_FILE_OFFSET_BITS=64   -c -o exempleMain_04.o
>> exempleMain_04.c
>> gcc -o EXE_04 exempleMain_04.o -I../includes/ -L../lib/ -lLMF
>> -L/Applications/root/lib -lCore -lCint -lHist -lGraf -lGraf3d -lGpad
>> -lTree -lRint -lPostscript -lMatrix -lPhysics -lfreetype -lpthread -lm
>> -ldl
>> /usr/bin/ld: Undefined symbols:
>> std::ios_base::Init::Init()
>> std::ios_base::Init::~Init()
>> std::__throw_bad_alloc()
>> std::__throw_length_error(char const*)
>> operator delete[](void*)
>> operator delete(void*)
>> operator new[](unsigned long)
>> operator new(unsigned long)
>> ___gxx_personality_v0
>> __Unwind_Resume
>> std::basic_istream<char, std::char_traits<char> >::operator>>(double&)
>> std::basic_istream<char, std::char_traits<char> >::operator>>(unsigned
>> long&)
>> std::basic_istream<char, std::char_traits<char> >::operator>>(unsigned
>> short&)
>> std::basic_ostream<char, std::char_traits<char>
>>     
>>> ::operator<<(std::basic_ostream<char, std::char_traits<char> >&
>>>       
>> (*)(std::basic_ostream<char, std::char_traits<char> >&))
>> std::basic_ostream<char, std::char_traits<char> >::operator<<(double)
>> std::basic_ostream<char, std::char_traits<char> >::operator<<(int)
>> std::basic_ostream<char, std::char_traits<char> >::operator<<(unsigned
>> long)
>> std::basic_ostream<char, std::char_traits<char> >::operator<<(unsigned
>> short)
>> std::cin
>> std::cout
>> std::basic_ostream<char, std::char_traits<char> >& std::endl<char,
>> std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char>
>>     
>>> &)
>>>       
>> std::basic_ostream<char, std::char_traits<char> >& std::operator<<
>> <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char>
>>     
>>> &, char const*)
>>>       
>> std::basic_istream<char, std::char_traits<char> >&
>> std::operator>><std::char_traits<char> >(std::basic_istream<char,
>> std::char_traits<char> >&, unsigned char&)
>> std::basic_ofstream<char, std::char_traits<char> >::open(char const*,
>> std::_Ios_Openmode)
>> std::basic_ofstream<char, std::char_traits<char> >::close()
>> std::basic_ofstream<char, std::char_traits<char> >::basic_ofstream()
>> std::basic_ofstream<char, std::char_traits<char> >::~basic_ofstream()
>> std::basic_ostream<char, std::char_traits<char> >::operator<<(unsigned
>> long long)
>> TVersionCheck::TVersionCheck(int)
>> std::basic_ofstream<char, std::char_traits<char> >::basic_ofstream(char
>> const*, std::_Ios_Openmode)
>> std::basic_istream<char, std::char_traits<char> >::operator>>(int&)
>> std::basic_ifstream<char, std::char_traits<char> >::open(char const*,
>> std::_Ios_Openmode)
>> std::basic_ifstream<char, std::char_traits<char> >::close()
>> std::basic_ifstream<char, std::char_traits<char> >::is_open()
>> std::basic_ifstream<char, std::char_traits<char> >::basic_ifstream()
>> std::basic_ifstream<char, std::char_traits<char> >::~basic_ifstream()
>> collect2: ld returned 1 exit status
>> make: *** [EXE_04] Error 1
>>
>>
>> I see that Gate does generate the LMF output (I think), but I don't
>> know how to read them as I can't get the examples working. Can anyone help
>> me out?
>>
>> For the record, I use the following:
>>
>> Gate 3.1.1
>> Geant4 4.8.1.p02
>> CLHEP 2.0.2.3
>> root 5.12
>> LMF 3.0
>>
>> I'm on a MacBook Pro Core 2 Duo.
>>
>> I appreciate any help you can give me!
>>
>> Marc Chamberland
>> Carleton University
>> _______________________________________________
>> Gate-users mailing list
>> Gate-users at lists.healthgrid.org
>> http://lists.healthgrid.org/mailman/listinfo/gate-users
>>
>>     
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> ------------------------------
>
> Message: 2
> Date: Tue, 10 Jul 2007 11:06:38 +0200
> From: Sebastien JAN <sebastien.jan at cea.fr>
> Subject: [Gate-users] [Fwd: FW: postdoctoral position in radiotherapy]
> To: gate users <gate-users at lists.healthgrid.org>
> Message-ID: <46934C1E.8010101 at cea.fr>
> Content-Type: text/plain; charset="iso-8859-1"
>
> Dear Gate-users,
>
>  In the attached file, you can find a description of a postdoctoral 
> position for 2 years in a laboratory of the CEA Saclay in France. The 
> subject is the "Characterization and validation of EPID systems for 
> accurate 2D transit dosimetry imaging".
>
> To apply, please send a CV, the names and contact details of 2 referees 
> and a letter to explain your motivations for the position to:
>
> Delphine Lazaro
> mailto : delphine.lazaro at cea.fr
> +33 (0)1 69 08 52 81
> Samuel Legoupil
> mailto: samuel.legoupil at cea.fr
> +33 (0)1 69 08 52 81
>  
>
> Bye,
> Sophie
>
>
>
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