[gate-users] Re: gate-users Digest, Vol 19, Issue 15

[Christian Wietholt]

Dear Sweta, 

You might have to modify your env_gate.csh file. I least I had to, 
to get rid of this message. I did several thing, but they seem a little
redundant. 

I first suggest you make sure that the following lines point to the 
directory with the file libCore.so

i.e. I had to place a "/root" after each "${ROOTSYS}/lib" occurance. 

....
  if (-d ${ROOTSYS}/lib/root) then
    if ( ${?LD_LIBRARY_PATH} ) then
      echo "Checking your LD_LIBRARY_PATH variable..."
      echo $LD_LIBRARY_PATH | grep ${ROOTSYS}/lib/root > /dev/null
      if ($status) then
        echo " ==> OK: ${ROOTSYS}/lib/root added to your LD_LIBRARY_PATH"
        setenv LD_LIBRARY_PATH ${LD_LIBRARY_PATH}:${ROOTSYS}/lib/root
      else
        echo " ==> OK: ${ROOTSYS}/lib/root is already in your LD_LIBRARY_PATH"
      endif
    else
      echo " ==> ${ROOTSYS}/lib/root added to your LD_LIBRARY_PATH"
      setenv LD_LIBRARY_PATH ${ROOTSYS}/lib/root
    endif
  else
    echo "WARNING: there is no ${ROOTSYS}/lib/root directory"
    echo "         you should check that ROOT shared libraries are included in LD_LIBRARY_PATH"
  endif
endif
....

Second, I put a new LD_LIBRARY_PATH statement in env_gate.csh right after
the initial setenv statements or I modified it, I am not sure anymore :

....
setenv G4INSTALL /usr/local/geant4.7.0.p01
setenv G4VERSION "7.0"
setenv GATEHOME /usr/local/gate_v2.2.0

if ( ${?LD_LIBRARY_PATH} ) then
  setenv LD_LIBRARY_PATH ${LD_LIBRARY_PATH}:/usr/local/lib:/usr/lib:/usr/local/lib/root
else
  setenv LD_LIBRARY_PATH /usr/local/lib:/usr/lib:/usr/local/lib/root
endif
....

again, pay attention that the PATH include the directory with libCore.so.

I hope this helps. 

Christian 


> ------------------------------
> 
> Message: 4
> Date: Thu, 20 Oct 2005 12:01:25 +0100 (BST)
> From: Sweta <sweta_indbhavan at yahoo.co.in>
> Subject: [gate-users] usr_bin_ld error
> To: GATE users <gate-users at lphe1pet1.epfl.ch>
> Message-ID: <20051020110125.9222.qmail at web8404.mail.in.yahoo.com>
> Content-Type: text/plain; charset="iso-8859-1"
> 
> I get the following errors with gatev2.2.0. I sourced geant4 and gate env.csh and env_gate.csh files from shell script.
>  
> 
> when trying to make gate executable 
> 
> [sparker at GEANT4-2005 ~/gate_v2.2.0]$ make
> 
> Using granular libraries ...
> 
> Linking Gate ...
> 
> /usr/bin/ld: cannot find -lCore
> 
> collect2: ld returned 1 exit status
> 
> make: *** [/home/sparker/bin/Linux-g++/Gate] Error 1
> 
> ----------
> 
> testing STIR library
> 
> [sparker at GEANT4-2005 ~/STIR]$ make run_tests
> 
> g++ -O3 -ffast-math -DNDEBUG -Wall -Wno-deprecated -I.
> 
> est/test_Array.o -MMD -MP -c test/test_Array.cxx
> 
> g++ -oopt/test/test_Array opt/test/test_Array.o opt/bu
> 
> ck/recon_buildblock_registries.o opt/IO/IO_registrie
> 
> istries.o opt/libstir.a -lm -lncurses
> 
> opt/test/test_Array
> 
> opt/test/test_Array: error while loading shared libraries:
> 
> ch file or directory
> 
> make: *** [run_test/test_Array] Error 127
> 
> rm opt/test/test_Array
> 
> -----------------
> 
> with ecat library
> 
> [sparker at GEANT4-2005 ~/ecat]$ make depend
> 
> makedepend -Dunix -O -I. ./*.c ./lib_compress/*.c
> 
> makedepend: warning: /usr/include/gnu/stubs.h: non-portable whitespace encount
> 
> ered at line 7
> 
> makedepend: warning: cannot open "./lib_compress/*.c"
> 
>  
> 
> Also from Utilities directory within ecat directory
> 
> [sparker at GEANT4-2005 ~/ecat/utils]$ make
> 
> cc -O -I.. -o matlist ./matlist.c ../libecat.a -lrpcsvc -lnsl -lsocket -lm
> 
> /usr/bin/ld: cannot find -lsocket
> 
> collect2: ld returned 1 exit status
> 
> make: *** [matlist] Error 1
> 
>  
> 
> --------------
> 
> when installing ROOT exe
> 
> [sparker at GEANT4-2005 ~/root]$ make install
> 
> Generating dictionary base/src/G__Base1.cxx...
> 
> utils/src/rootcint_tmp -f base/src/G__Base1.cxx -c base/inc/TApplication.h base/inc/TApplicationImp.h base/inc/TAtt3D.h base/inc/TAttAxis.h base/inc/TAttFill.h base/inc/TAttLine.h base/inc/TAttMarker.h base/inc/TAttPad.h base/inc/TAttText.h base/inc/TBenchmark.h base/inc/TBrowser.h base/inc/TBrowserImp.h base/inc/TBuffer3D.h base/inc/TBuffer3DTypes.h base/inc/TBuffer.h base/inc/TCanvasImp.h base/inc/TColor.h base/inc/TComplex.h base/inc/TContextMenu.h base/inc/TContextMenuImp.h base/inc/TControlBarImp.h base/inc/TDatime.h base/inc/TDirectory.h base/inc/TEnv.h base/inc/TError.h base/inc/TException.h base/inc/TExec.h base/inc/TFile.h base/inc/TFolder.h base/inc/TFree.h base/inc/TGuiFactory.h base/inc/TInspectorImp.h base/inc/TKey.h base/inc/TKeyMapFile.h base/inc/TMapFile.h base/inc/TMath.h base/inc/TMD5.h base/inc/TMemberInspector.h base/inc/TMessageHandler.h base/inc/TNamed.h base/inc/TObject.h base/inc/TObjString.h base/inc/TPadView3D.h base/inc/TPluginManager.h base/inc/!
 TPo
>  int.h
>  base/inc/TProcessID.h base/inc/TProcessUUID.h base/inc/TQCommand.h base/inc/TQConnection.h base/inc/TQObject.h base/inc/TRandom2.h base/inc/TRandom3.h base/inc/TRandom.h base/inc/TRealData.h base/inc/TRefCnt.h base/inc/TRef.h base/inc/TRegexp.h base/inc/TROOT.h base/inc/TStopwatch.h base/inc/TStorage.h base/inc/TString.h base/inc/TStringLong.h base/inc/TStyle.h base/inc/TSysEvtHandler.h base/inc/TSystemDirectory.h base/inc/TSystemFile.h base/inc/TSystem.h base/inc/TTask.h base/inc/TTime.h base/inc/TTimer.h base/inc/TUUID.h base/inc/TView.h base/inc/TVirtualFitter.h base/inc/TVirtualGL.h base/inc/TVirtualPadEditor.h base/inc/TVirtualPad.h base/inc/TVirtualPS.h base/inc/TVirtualUtil3D.h base/inc/TVirtualUtilHist.h base/inc/TVirtualUtilPad.h base/inc/TVirtualViewer3D.h base/inc/LinkDef1.h
> 
> utils/src/rootcint_tmp: error while loading shared libraries: libstdc++.so.6: cannot open shared object file: No such file or directory
> 
> make: *** [base/src/G__Base1.cxx] Error 127
> 
> -----------------------
> 
>  
> 
> I must admit that the previous time I installed, the gate files were corrupt and the env files assumed different names for G4WORKDIR. Hence I reinstalled geant4 and GATE again and now I check the variables everytime I login.
> 
>  
> 
> I have installed the following on my system
> 
> gcc3.4.4
> 
> make 3.80
> 
> geant4.7.0.p01
> 
> CLHEP 1.8.1.0
> 
> AIDA 3.2.1
> 
> MesaGL 6.3.2
> 
> STL
> 
> LMF 2[1].0
> 
> ROOT 4.03.04
> 
> STIR
> 
> ECAT
> 
>  
> 
> Thanks in advance.
> 
>  
> 
> Sweta 
> 
> 
> 		
> ---------------------------------
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