[gate-users] segmentation violation error when running gate
Ikbal Cam
ikbal.cam at gmail.com
Mon Nov 21 15:08:01 CET 2005
Hi again,
Sebastian, Thanks for your reply. Even geant4-7.0.p01 is not
validated/guaranteed to work with gcc-4, I could compile, install and
run the example files of the g4 successfully. That's why I think, the
problem can not be described as the version incompability between gcc
and geant4.
I still hope that there should be a way, like changing some lines of
gate source code and installing it again and succeed to run the
simulations in gate in my current configuration.
Thanks for any help or sharing your previous experiences with a
similar configuration.
My previous email that I described the detailed problem can be found here;
http://www-lphe.epfl.ch/~PET/GATEusers/documentation/GATE-USERS_TALK/html/2005-November/001135.html
Any ideas?
Ikbal Cam
On 11/21/05, Sebastien JAN <jan at shfj.cea.fr> wrote:
> Hi,
>
> g4 7.0.p01 is not validated for gcc 4.0 (same case for GATE)
> you need to install a previous gcc version on your linux distrib (3.2 or
> 3.3 are OK with gate_v2.2)
>
> cheers
> Sebastien
>
> Ikbal Cam wrote:
> > Hi to all,
> >
> > First of all, thanks to all for your previous messages in the list and
> > the install guide, that I could learn enough to install Gate. I have a
> > big desire to run some Gate simulation with my following
> > configuration.
> >
> > I have a Fedora Core4 (x86_64 version) Box with Intel Pentium4 3.0 GHZ
> > EMT64 Processor and 1 GB RAM.
> >
> > I installed the following softwares , although the versions are not
> > tested and specified to work together correctly. I had to change a
> > little bit of the source codes and makefiles to make them installed.
> >
> > Compiler : gcc-4.0 (default compiler provided by Fedora 4 )
> >
> > clhep 1.8.1.0
> > geant4 7.0.p01
> > root-v5.06.00
> > ecat7
> > lmf 2.0
> > Gate v.2.2.0
> >
> > I was able to test most of the example files of the specified
> > softwares except GATE.
> >
> > When I cd to the directory where I installed gate, I tried to run the
> > PET_CylindricalPET_System.mac example macro with following command.
> >
> > bin/Linux-g++/Gate < examples/example_PET_Scanner/PET_CylindricalPET_System.mac
> >
> > I get the following error (segmentation violation) at the end of the output.
> >
> >
> > ========= Table of registered couples ==============================
> >
> > Index : 0 used in the geometry : Yes recalculation needed : No
> > Material : Air
> > Range cuts : gamma 1 mm e- 1 m e+ 1 mm
> > Energy thresholds : gamma 990 eV e- 378.379 keV e+ 990 eV
> > Region(s) which use this couple :
> > DefaultRegionForTheWorld
> >
> > Index : 1 used in the geometry : Yes recalculation needed : No
> > Material : LSO
> > Range cuts : gamma 1 mm e- 1 m e+ 1 mm
> > Energy thresholds : gamma 70.1042 keV e- 5.58977 TeV e+ 1.02561 MeV
> > Region(s) which use this couple :
> > DefaultRegionForTheWorld
> >
> > Index : 2 used in the geometry : Yes recalculation needed : No
> > Material : Water
> > Range cuts : gamma 1 mm e- 1 m e+ 1 mm
> > Energy thresholds : gamma 2.90186 keV e- 317.969 MeV e+ 338.695 keV
> > Region(s) which use this couple :
> > DefaultRegionForTheWorld
> >
> > ====================================================================
> >
> >
> > ----- HepJamesRandom engine status -----
> > Initial seed = 9876
> > u[] = 0.174685 0.883674 0.958512 0.690013 0.0250537 0.142294 0.783649
> > 0.356081 0.214774 0.69287 0.700302 0.465109 0.22215 0.768752 0.461089
> > 0.397602 0.522215 0.121546 0.960227 0.510892 0.0116568 0.0286447
> > 0.238777 0.585219 0.780612 0.709182 0.082106 0.828601 0.61446
> > 0.0798209 0.688002 0.00978529 0.370831 0.376435 0.710184 0.864017
> > 0.167338 0.21114 0.349235 0.522479 0.943713 0.0702708 0.778742
> > 0.639458 0.506555 0.151751 0.990123 0.564688 0.430497 0.889832
> > 0.995398 0.725368 0.710512 0.0550886 0.0540335 0.0159176 0.728379
> > 0.947141 0.34922 0.20551 0.351029 0.672539 0.118976 0.655784 0.195375
> > 0.0380308 0.293556 0.237497 0.79723 0.158375 0.029761 0.602215
> > 0.616657 0.995638 0.734827 0.943425 0.130007 0.277064 0.306344
> > 0.973337 0.183926 0.547536 0.914344 0.666572 0.210074 0.300351 0.83602
> > 0.267525 0.248549 0.533332 0.1754 0.299529 0.538308 0.555472 0.283894
> > 0.485254 0.222273
> > c = 0.0216029, cd = 0.456233, cm = 1
> > i97 = 96, u[i97] = 0.222273
> > j97 = 32, u[j97] = 0.370831
> > ----------------------------------------
> >
> > *** Break *** segmentation violation
> > Generating stack trace...
> > 0x0000000000b8694f in G4EventManager::DoProcessing(G4Event*) at
> > GateVoxelMatrixInserterMessenger.cc:0 from bin/Linux-g++/Gate
> > 0x0000000000b52213 in G4RunManager::DoEventLoop(int, char const*,
> > int) at GatePileupMessenger.cc:0 from bin/Linux-g++/Gate
> > 0x0000000000b503ba in G4RunManager::BeamOn(int, char const*, int) +
> > 0x6a from bin/Linux-g++/Gate
> > 0x0000000000567c75 in GateApplicationMgr::StartDAQ() + 0x175 from
> > bin/Linux-g++/Gate
> > 0x00000000005ce78a in
> > GateApplicationMgrMessenger::SetNewValue(G4UIcommand*, G4String) +
> > 0x11a from bin/Linux-g++/Gate
> > 0x0000000000d7a637 in G4UIcommand::DoIt(G4String) + 0x7f7 from
> > bin/Linux-g++/Gate
> > 0x0000000000d81acd in G4UImanager::ApplyCommand(char const*) + 0x3dd
> > from bin/Linux-g++/Gate
> > 0x0000000000809118 in G4UIterminal::ExecuteCommand(G4String) + 0x58
> > from bin/Linux-g++/Gate
> > 0x000000000080a8af in G4UIterminal::SessionStart() + 0x4f from
> > bin/Linux-g++/Gate
> > 0x0000000000563c40 in main + 0x300 from bin/Linux-g++/Gate
> > 0x0000003fc6e1c4cc in __libc_start_main + 0xdc from /lib64/libc.so.6
> > 0x0000000000562a39 in TApplicationImp::ShowMembers(TMemberInspector&,
> > char*) + 0x79 from bin/Linux-g++/Gate
> > Abort
> >
> >
> > =====================
> > After reading some posts about random seed, I changed some lines of
> > the macro file
> >
> > /gate/output/root/setSaveRndmFlag 0
> > /random/resetEngineFrom StartSeq1.rndm
> >
> >
> > Still I see the same error (segmentation violation) in the screen.
> >
> > Index : 2 used in the geometry : Yes recalculation needed : No
> > Material : Water
> > Range cuts : gamma 1 mm e- 1 m e+ 1 mm
> > Energy thresholds : gamma 2.90186 keV e- 317.969 MeV e+ 338.695 keV
> > Region(s) which use this couple :
> > DefaultRegionForTheWorld
> >
> > ====================================================================
> >
> >
> > *** Break *** segmentation violation
> > Generating stack trace...
> > 0x0000000000b8694f in G4EventManager::DoProcessing(G4Event*) at
> > GateVoxelMatrixInserterMessenger.cc:0 from bin/Linux-g++/Gate
> > 0x0000000000b52213 in G4RunManager::DoEventLoop(int, char const*,
> > int) at GatePileupMessenger.cc:0 from bin/Linux-g++/Gate
> > 0x0000000000b503ba in G4RunManager::BeamOn(int, char const*, int) +
> > 0x6a from bin/Linux-g++/Gate
> > 0x0000000000567c75 in GateApplicationMgr::StartDAQ() + 0x175 from
> > bin/Linux-g++/Gate
> > 0x00000000005ce78a in
> > GateApplicationMgrMessenger::SetNewValue(G4UIcommand*, G4String) +
> > 0x11a from bin/Linux-g++/Gate
> > 0x0000000000d7a637 in G4UIcommand::DoIt(G4String) + 0x7f7 from
> > bin/Linux-g++/Gate
> > 0x0000000000d81acd in G4UImanager::ApplyCommand(char const*) + 0x3dd
> > from bin/Linux-g++/Gate
> > 0x0000000000809118 in G4UIterminal::ExecuteCommand(G4String) + 0x58
> > from bin/Linux-g++/Gate
> > 0x000000000080a8af in G4UIterminal::SessionStart() + 0x4f from
> > bin/Linux-g++/Gate
> >
> > ===============
> >
> > Before the errors, everything seem to work correctly in OpenGL
> > visualisation window.
> > I hope there is something to do about my Gate installation or configuration.
> > Any helps or advices will be appreciated and I hope to send an
> > Installation Guide based upon my configuration.
> >
> >
> > Hope to get some replies before some more nightmares.
> > Thanks in advance.
> >
> > ---
> > Ikbal Cam
> > Electronics and Communication Engineer
> >
> > _______________________________________________
> > gate-users mailing list
> > gate-users at lphe1pet1.epfl.ch
> > http://lphe1pet1.epfl.ch/mailman/listinfo/gate-users
> >
> >
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