[gate-users] segmentation violation error when running gate
Ikbal Cam
ikbal.cam at gmail.com
Sat Nov 19 20:50:49 CET 2005
Hi to all,
First of all, thanks to all for your previous messages in the list and
the install guide, that I could learn enough to install Gate. I have a
big desire to run some Gate simulation with my following
configuration.
I have a Fedora Core4 (x86_64 version) Box with Intel Pentium4 3.0 GHZ
EMT64 Processor and 1 GB RAM.
I installed the following softwares , although the versions are not
tested and specified to work together correctly. I had to change a
little bit of the source codes and makefiles to make them installed.
Compiler : gcc-4.0 (default compiler provided by Fedora 4 )
clhep 1.8.1.0
geant4 7.0.p01
root-v5.06.00
ecat7
lmf 2.0
Gate v.2.2.0
I was able to test most of the example files of the specified
softwares except GATE.
When I cd to the directory where I installed gate, I tried to run the
PET_CylindricalPET_System.mac example macro with following command.
bin/Linux-g++/Gate < examples/example_PET_Scanner/PET_CylindricalPET_System.mac
I get the following error (segmentation violation) at the end of the output.
========= Table of registered couples ==============================
Index : 0 used in the geometry : Yes recalculation needed : No
Material : Air
Range cuts : gamma 1 mm e- 1 m e+ 1 mm
Energy thresholds : gamma 990 eV e- 378.379 keV e+ 990 eV
Region(s) which use this couple :
DefaultRegionForTheWorld
Index : 1 used in the geometry : Yes recalculation needed : No
Material : LSO
Range cuts : gamma 1 mm e- 1 m e+ 1 mm
Energy thresholds : gamma 70.1042 keV e- 5.58977 TeV e+ 1.02561 MeV
Region(s) which use this couple :
DefaultRegionForTheWorld
Index : 2 used in the geometry : Yes recalculation needed : No
Material : Water
Range cuts : gamma 1 mm e- 1 m e+ 1 mm
Energy thresholds : gamma 2.90186 keV e- 317.969 MeV e+ 338.695 keV
Region(s) which use this couple :
DefaultRegionForTheWorld
====================================================================
----- HepJamesRandom engine status -----
Initial seed = 9876
u[] = 0.174685 0.883674 0.958512 0.690013 0.0250537 0.142294 0.783649
0.356081 0.214774 0.69287 0.700302 0.465109 0.22215 0.768752 0.461089
0.397602 0.522215 0.121546 0.960227 0.510892 0.0116568 0.0286447
0.238777 0.585219 0.780612 0.709182 0.082106 0.828601 0.61446
0.0798209 0.688002 0.00978529 0.370831 0.376435 0.710184 0.864017
0.167338 0.21114 0.349235 0.522479 0.943713 0.0702708 0.778742
0.639458 0.506555 0.151751 0.990123 0.564688 0.430497 0.889832
0.995398 0.725368 0.710512 0.0550886 0.0540335 0.0159176 0.728379
0.947141 0.34922 0.20551 0.351029 0.672539 0.118976 0.655784 0.195375
0.0380308 0.293556 0.237497 0.79723 0.158375 0.029761 0.602215
0.616657 0.995638 0.734827 0.943425 0.130007 0.277064 0.306344
0.973337 0.183926 0.547536 0.914344 0.666572 0.210074 0.300351 0.83602
0.267525 0.248549 0.533332 0.1754 0.299529 0.538308 0.555472 0.283894
0.485254 0.222273
c = 0.0216029, cd = 0.456233, cm = 1
i97 = 96, u[i97] = 0.222273
j97 = 32, u[j97] = 0.370831
----------------------------------------
*** Break *** segmentation violation
Generating stack trace...
0x0000000000b8694f in G4EventManager::DoProcessing(G4Event*) at
GateVoxelMatrixInserterMessenger.cc:0 from bin/Linux-g++/Gate
0x0000000000b52213 in G4RunManager::DoEventLoop(int, char const*,
int) at GatePileupMessenger.cc:0 from bin/Linux-g++/Gate
0x0000000000b503ba in G4RunManager::BeamOn(int, char const*, int) +
0x6a from bin/Linux-g++/Gate
0x0000000000567c75 in GateApplicationMgr::StartDAQ() + 0x175 from
bin/Linux-g++/Gate
0x00000000005ce78a in
GateApplicationMgrMessenger::SetNewValue(G4UIcommand*, G4String) +
0x11a from bin/Linux-g++/Gate
0x0000000000d7a637 in G4UIcommand::DoIt(G4String) + 0x7f7 from
bin/Linux-g++/Gate
0x0000000000d81acd in G4UImanager::ApplyCommand(char const*) + 0x3dd
from bin/Linux-g++/Gate
0x0000000000809118 in G4UIterminal::ExecuteCommand(G4String) + 0x58
from bin/Linux-g++/Gate
0x000000000080a8af in G4UIterminal::SessionStart() + 0x4f from
bin/Linux-g++/Gate
0x0000000000563c40 in main + 0x300 from bin/Linux-g++/Gate
0x0000003fc6e1c4cc in __libc_start_main + 0xdc from /lib64/libc.so.6
0x0000000000562a39 in TApplicationImp::ShowMembers(TMemberInspector&,
char*) + 0x79 from bin/Linux-g++/Gate
Abort
=====================
After reading some posts about random seed, I changed some lines of
the macro file
/gate/output/root/setSaveRndmFlag 0
/random/resetEngineFrom StartSeq1.rndm
Still I see the same error (segmentation violation) in the screen.
Index : 2 used in the geometry : Yes recalculation needed : No
Material : Water
Range cuts : gamma 1 mm e- 1 m e+ 1 mm
Energy thresholds : gamma 2.90186 keV e- 317.969 MeV e+ 338.695 keV
Region(s) which use this couple :
DefaultRegionForTheWorld
====================================================================
*** Break *** segmentation violation
Generating stack trace...
0x0000000000b8694f in G4EventManager::DoProcessing(G4Event*) at
GateVoxelMatrixInserterMessenger.cc:0 from bin/Linux-g++/Gate
0x0000000000b52213 in G4RunManager::DoEventLoop(int, char const*,
int) at GatePileupMessenger.cc:0 from bin/Linux-g++/Gate
0x0000000000b503ba in G4RunManager::BeamOn(int, char const*, int) +
0x6a from bin/Linux-g++/Gate
0x0000000000567c75 in GateApplicationMgr::StartDAQ() + 0x175 from
bin/Linux-g++/Gate
0x00000000005ce78a in
GateApplicationMgrMessenger::SetNewValue(G4UIcommand*, G4String) +
0x11a from bin/Linux-g++/Gate
0x0000000000d7a637 in G4UIcommand::DoIt(G4String) + 0x7f7 from
bin/Linux-g++/Gate
0x0000000000d81acd in G4UImanager::ApplyCommand(char const*) + 0x3dd
from bin/Linux-g++/Gate
0x0000000000809118 in G4UIterminal::ExecuteCommand(G4String) + 0x58
from bin/Linux-g++/Gate
0x000000000080a8af in G4UIterminal::SessionStart() + 0x4f from
bin/Linux-g++/Gate
===============
Before the errors, everything seem to work correctly in OpenGL
visualisation window.
I hope there is something to do about my Gate installation or configuration.
Any helps or advices will be appreciated and I hope to send an
Installation Guide based upon my configuration.
Hope to get some replies before some more nightmares.
Thanks in advance.
---
Ikbal Cam
Electronics and Communication Engineer
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