[gate-users] RE: gate-users Digest, Vol 16, Issue 12

Fri Jul 15 23:29:24 CEST 2005

Dear Susana
Did you use clhep 1.8 with geant 4.7 on Fedora core 4 (gcc -4.0). 
Is that what your configuration is right now.
Thanks for your help.
Vandana

On 7/15/05, Susana Silva <susana.silva at fc.ul.pt> wrote:
> 
> Hi, Vandana!
> 
> When i installed GATE i had the same problem.
> I really don't know who i did solve my problem, but i think you must try to run the Geant4 example N02 (example/novice/N02). In there I think you will have the same problem, it is not a compilation problem but a linking problem.
> Try use clhep 1.8.1.0 and run the examples, maybe you find the problem...
> 
> I hope this help you.
> 
> Cheers,
> 
> Susana Silva
> 
> 
> -----Original Message-----
> From:   gate-users-bounces at lphe1pet1.epfl.ch on behalf of gate-users-request at lphe1pet1.epfl.ch
> Sent:   Fri 15-07-2005 11:00
> To:     gate-users at lphe1pet1.epfl.ch
> Cc:
> Subject:        gate-users Digest, Vol 16, Issue 12
> Send gate-users mailing list submissions to
>         gate-users at lphe1pet1.epfl.ch
> 
> To subscribe or unsubscribe via the World Wide Web, visit
>         http://lphe1pet1.epfl.ch/mailman/listinfo/gate-users
> 
> Please use the GATE's site webmaster e-mail to  reach the person
> managing the list.
> 
> 
> Today's Topics:
> 
>    1. Positron annihilation distance (message text) (Rutao Yao)
>    2. Re: gate-users Digest, Vol 16, Issue 10 (Jianfeng He)
>    3. gcc-4.0 (Vandana Kohli)
> 
> 
> ----------------------------------------------------------------------
> 
> Message: 1
> Date: Thu, 14 Jul 2005 16:45:42 -0400
> From: "Rutao Yao" <rutaoyao at buffalo.edu>
> Subject: [gate-users] Positron annihilation distance (message text)
> To: <gate-users at lphe1pet1.epfl.ch>
> Message-ID: <200507142045.j6EKjfdT002326 at lphe1pet1.epfl.ch>
> Content-Type: text/plain; charset="us-ascii"
> 
> Hi,
> 
> Maybe someone here can give me some advices.  I have trouble to understand
> the positron-range results generated with GATE.
> 
> For F18, the positron range distribution (see attached gif figure) shows an
> unexpected peak between 1 and 2 mm, which is not present in published
> literature (Levin and Hoffman, Craig S Levin and Edward J Hoffman 1999 Phys.
> Med. Biol. *44* 781-799; Laforest R, Rowland DJ, Welch MJ. 2002. MicroPET
> imaging with nonconventional isotopes. IEEE Trans Nucl Sci 49, 2119-2126).
> The figure can be easily reproduced by running benchmarkPET scripts, just
> remove the Oxygen15 parts in the sources.mac.  We saw similar results with
> Oxygen15.
> 
> The GATE version we are using is v1.0.  I don't see this issue mentioned in
> the later version's releaseNotes.
> 
> Thanks in advance!
> 
> 
> Rutao Yao, Ph.D.
> 
> University at Buffalo
> 
> 
> 
> 
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> 
> ------------------------------
> 
> Message: 2
> Date: 15 Jul 2005 10:00:53 +1000
> From: Jianfeng He <jfenghe at petnm.unimelb.edu.au>
> Subject: [gate-users] Re: gate-users Digest, Vol 16, Issue 10
> To: gate-users at lphe1pet1.epfl.ch
> Cc: schmidtr at mskcc.org
> Message-ID: <1121385653.14367.8.camel at smeagol>
> Content-Type: text/plain; charset=UTF-8
> 
> Hi Ross,
> 
> I am intrested in the root Cint program. Can I get the program? Thanks
> in advance.
> 
> Best regards,
> 
> Jianfeng
> 
> 
> 
> 
> 
> 
> 
> On Thu, 2005-07-14 at 20:00, gate-users-request at lphe1pet1.epfl.ch wrote:
> > Send gate-users mailing list submissions to
> >       gate-users at lphe1pet1.epfl.ch
> >
> > To subscribe or unsubscribe via the World Wide Web, visit
> >       http://lphe1pet1.epfl.ch/mailman/listinfo/gate-users
> >
> > Please use the GATE's site webmaster e-mail to  reach the person
> > managing the list.
> >
> >
> > Today's Topics:
> >
> >    1. Sinogram output with cylindrical PET system (Ana Iriarte)
> >    2. RE: Sinogram output with cylindrical PET system
> >       (Schmidtlein, Ross/Sloan-Kettering Institute)
> >    3. pb with BGO material (Bastien Gu?rin)
> >
> >
> > ----------------------------------------------------------------------
> >
> > Message: 1
> > Date: Wed, 13 Jul 2005 15:04:39 +0200
> > From: Ana Iriarte <ana at cnb.uam.es>
> > Subject: [gate-users] Sinogram output with cylindrical PET system
> > To: gate-users at lphe1pet1.epfl.ch
> > Message-ID: <42D51167.9080301 at cnb.uam.es>
> > Content-Type: text/plain;     charset=us-ascii;       format=flowed
> >
> > Hi everybody
> >
> > Is it possible to have sinogram output when using cylindrical PET as
> > system or it is exclusively for using with ecat system?
> >
> > Thank you in advance.
> >
> >
> > ------------------------------
> >
> > Message: 2
> > Date: Wed, 13 Jul 2005 10:32:22 -0400
> > From: "Schmidtlein, Ross/Sloan-Kettering Institute"
> >       <schmidtr at mskcc.org>
> > Subject: RE: [gate-users] Sinogram output with cylindrical PET system
> > To: "GATE feedback and helpline for Users"
> >       <gate-users at lphe1pet1.epfl.ch>
> > Message-ID:
> >       <C7E28BA5A8C2B84AAD401F815B1ABA5C01482823 at smskpexmbx4.mskcc.root.mskcc.org>
> >
> > Content-Type: text/plain; charset=us-ascii
> >
> > Hi Ana,
> >
> > The sinogram output is for the ECAT system only.  Our group has written
> > a root Cint program that will bin coincidences into sinograms for
> > cylindricalPET system.  Let me know if you are interested.
> >
> > ross
> >
> > -----Original Message-----
> > From: gate-users-bounces at lphe1pet1.epfl.ch
> > [mailto:gate-users-bounces at lphe1pet1.epfl.ch] On Behalf Of Ana Iriarte
> > Sent: Wednesday, July 13, 2005 9:05 AM
> > To: gate-users at lphe1pet1.epfl.ch
> > Subject: [gate-users] Sinogram output with cylindrical PET system
> >
> >
> > Hi everybody
> >
> > Is it possible to have sinogram output when using cylindrical PET as
> > system or it is exclusively for using with ecat system?
> >
> > Thank you in advance.
> >
> > _______________________________________________
> > gate-users mailing list
> > gate-users at lphe1pet1.epfl.ch
> > http://lphe1pet1.epfl.ch/mailman/listinfo/gate-users
> >
> >
> >
> >
> > ------------------------------
> >
> > Message: 3
> > Date: 14 Jul 2005 14:57:21 -0400
> > From: "Bastien Gu?rin" <guerin at bwh.harvard.edu>
> > Subject: [gate-users] pb with BGO material
> > To: gate-users at lphe1pet1.epfl.ch
> > Message-ID: <BEFC2DD1.56C%guerin at bwh.harvard.edu>
> > Content-Type: text/plain; charset="ISO-8859-1"
> >
> > Dear All,
> >
> > I have a problem when using the BGO material as it is defined in GATE. I
> > simulate a 511 kev photons beam on a BGO single block detector. The overall
> > spectra seem correct (photopeak @ 511 keV, Compton plateau with compton edge
> > @ 340 keV) but I have a peak (comparable to the compton edge) between the
> > compton edge and the photopeak. This clearly doesn't correspond to any
> > physical effect and something is wrong in this simulation. I check pretty
> > much everything but the mistake doesn't seem trivial to find.
> >
> > Does one of you already encountered this problem?
> >
> > Thanks a lot for your support!
> >
> > BG
> >
> > ----
> >
> > Bastien GuÃ(c)rin
> > PhD candidate, University of Paris
> > Visiting Fellow, Harvard University
> >   work: 617-525-6629
> >   urgent: 617-817-2762
> >
> >
> >
> >
> > ------------------------------
> >
> > _______________________________________________
> > gate-users mailing list
> > gate-users at lphe1pet1.epfl.ch
> > http://lphe1pet1.epfl.ch/mailman/listinfo/gate-users
> >
> > End of gate-users Digest, Vol 16, Issue 10
> > ******************************************
> >
> 
> 
> ------------------------------
> 
> Message: 3
> Date: Thu, 14 Jul 2005 20:01:08 -1000
> From: Vandana Kohli <kohli.vandana at gmail.com>
> Subject: [gate-users] gcc-4.0
> To: gate-users at lphe1pet1.epfl.ch
> Message-ID: <298e9e170507142301726cc6ba at mail.gmail.com>
> Content-Type: text/plain; charset=ISO-8859-1
> 
> Dear Gate members,
> I am able to compile geant4.7.1 and clhep1.9.2 on Fedora core3 with gcc 4.0.
> When I try to install Gate on, I get the following error message
> Linking Gate ...
> /usr/bin/ld: cannot find -lXt
> collect2: ld returned 1 exit status
> 
> Any suggestions will be very helpful.
> Thanks
> Vandana
> 
> 
> ------------------------------
> 
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> End of gate-users Digest, Vol 16, Issue 12
> ******************************************
> 
> 
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