[gate-users] Gate_V1.0 installation
Calvat Pascal
pcalvat at cc.in2p3.fr
Thu May 13 16:46:50 CEST 2004
Hi Seb,
in our cluster we have 800 cpu with redhat 7.2. The next version of redhat
will be Redhat Enterprise Linux. It's impossible for me to install a redhat
8 or 9.
We have install on our cluster the compiled version of gate 4.4.1 for
datagrid and it works very well on redhat 7.2.
My problem is only to compile.
Thank you for your help.
Pascal
-----Message d'origine-----
De : gate-users-bounces at lphe1pet1.epfl.ch
[mailto:gate-users-bounces at lphe1pet1.epfl.ch]De la part de Sebastien Jan
Envoyé : jeudi 13 mai 2004 16:28
À : Corinne.Groiselle at umassmed.edu; GATE feedback and helpline for Users
Objet : Re: [gate-users] Gate_V1.0 installation
Hi again,
Concerning the release note of G4.5.2, you can find the following
informations :
1. Supported and Tested Platforms
---------------------------------
o SUN Solaris 5.8, C++ 5.4 Patch 111715-02.
o Linux, gcc 2.95.2, gcc 3.2.
This configuration was tested with the RedHat 7.3 distribution,
versions of Geant4 have also been compiled successfully on other
Linux distributions, like Debian or Suse.
The default RedHat compiler gcc-2.96 distributed in RedHat 7.X is
NOT
supported. It has been verified that it produces incorrect binaries,
therefore is not reliable. See also note below.
This G4 version was not tested with RH 7.2.
I have no more information or experience about this point but it is more
reasonnable to
try to install G4 and GATE with an other version of RedHat than the 7.2
cheers
seb
Hi Pascal,
I know............
But I spent a lot of time trying to see what was going on and it would
never work!
I could compile G4, and then I couldn't run it. I guess the executable
file was probably corrupted.
I am sorry, I am not of much of help in this.
Corinne
Calvat Pascal wrote:
Hi Corinne,we have several version of gcc 2.95.2, 2.95.3, 3.0.4, 3.1,
3.2, 3.2.3, 3.3 ggc-alt-3.2 (version speciale du cern)egsc (2.92.66) is six
years old. Normally,in the README file, the required version of gcc is 3.2
to compile gate. I don't understand why it doesn't work with gcc 3.2 on
redhat 7.2.Thank you for your helpCheersPascal Calvat (CC-IN2P3)
-----Message d'origine-----
De : Groiselle, Corinne
[mailto:gate-users-bounces at lphe1pet1.epfl.ch]De la part de Groiselle,
Corinne
Envoyé : jeudi 13 mai 2004 13:47
À : GATE feedback and helpline for Users
Objet : RE: [gate-users] Gate_V1.0 installation
Hi,For info, I have never been able to have GATE running with RH 7.2
and gcc. I used egcs instead and the problem was solved!Corinne
-----Original Message-----
From: gate-users-bounces at lphe1pet1.epfl.ch on behalf of Calvat
Pascal
Sent: Thu 5/13/2004 7:40 AM
To: GATE feedback and helpline for Users
Cc:
Subject: RE: [gate-users] Gate_V1.0 installation
Hi Sebastien,1) I use the following compiler : gcc version 2.95.3
20010315 (release)Geant has been compiled with this compiler.2) Result of
source env_gate:The current value of G4INSTALL is:
/usr/local/geant4/geant4.5.2.ref02
The current value of G4VERSION is: 5.2Launching Geant4
configuration script /usr/local/geant4/geant4.5.2.ref02/env.cshOn this
machine the G4SYSTEM=Linux-g++
On this machine the G4INSTALL=/usr/local/geant4/geant4.5.2.ref02
On this machine the
G4INCLUDE=/usr/local/geant4/geant4.5.2.ref02/include
On this machine the G4LIB=/usr/local/geant4/geant4.5.2.ref02/lib
On this machine the
G4LEVELGAMMADATA=/usr/local/geant4/geant4.5.2.ref02/data/PhotonEvaporation
On this machine the
G4RADIOACTIVEDATA=/usr/local/geant4/geant4.5.2.ref02/data/RadiativeDecay
On this machine the
G4LEDATA=/usr/local/geant4/geant4.5.2.ref02/../G4EMLOW1.1
On this machine the
NeutronHPCrossSections=/usr/local/geant4/geant4.5.2.ref02/../G4NDL3.7
On this machine the CLHEP_BASE_DIR=/usr/local/lhcxx/CLHEP/1.8.0.0
On this machine the
CLHEP_INCLUDE_DIR=/usr/local/lhcxx/CLHEP/1.8.0.0/include
On this machine the
CLHEP_LIB_DIR=/usr/local/lhcxx/CLHEP/1.8.0.0/lib
On this machine the CLHEP_LIB_DIR has been added to
LD_LIBRARY_PATH
On this machine the CLHEP_LIB=CLHEP
On this machine the G4ANALYSIS_USE=1
On this machine the G4UI_BUILD_XM_SESSION=1
On this machine the G4UI_USE_XM=1
On this machine the G4VIS_BUILD_DAWN_DRIVER=1
On this machine the G4VIS_BUILD_OPENGLX_DRIVER=1
On this machine the G4VIS_BUILD_OPENGLXM_DRIVER=1
On this machine the G4VIS_USE_DAWN=1
On this machine the G4VIS_USE_OPENGLX=1
On this machine the G4VIS_USE_OPENGLXM=1
On this machine the OGLHOME=/usr
On this machine the G4LIB_BUILD_G3TOG4=1
On this machine the G4USE_G3TOG4=1
On this machine the G4LIB_USE_GRANULAR=1
G4WORKDIR will be set to
HOME=/afs/in2p3.fr/home/c/calvat.Configuring GATE optionsG4WORKDIR set to .
G4TMP set to ./tmp
G4BIN set to ./bin
Data analysis and output features enabled
Ascii data output enabled
Checking your LD_LIBRARY_PATH variable...
==> OK: /usr/local/root/root_v3.10.02.gcc2.95.2/root/lib added to
your LD_LIBRARY_PATH
Use of ROOT enabled
ROOT real-time plotter disabled
LMF data output disabled
ECAT7 data output disabled
WARNING: variable GATEHOME is not set
it will be assumed to be the current directory
==> /afs/.in2p3.fr/system/@sys/usr/local/gate
Checking your path variable...
==> OK: /afs/.in2p3.fr/system/@sys/usr/local/gate/bin/Linux-g++
added to your path variable
G4VERSION4 is not set: GATE will use the code compatible with
Geant4 version >= 5.0
G4VERSION5_1 is set: GATE will use the run manager compatible with
the Geant4 version >= 5.1
G4VERSION5_2 is set: GATE is compatible with the Geant4 version =
5.2
CheersPascal Calvat
-----Message d'origine-----
De : gate-users-bounces at lphe1pet1.epfl.ch
[mailto:gate-users-bounces at lphe1pet1.epfl.ch]De la part de Sebastien Jan
Envoyé : jeudi 13 mai 2004 12:35
À : GATE feedback and helpline for Users
Objet : Re: [gate-users] Gate_V1.0 installation
Hi Pascal,
What is your compiler ?
RH 7.2 et G4.5.2 are not defined in the recommanded set up, but
normaly GATE works also with the following version :
RH 7.2
G4.5.2-p01
compiler : egsc 2.91.66
Cheers
seb
Hi,
I'm trying to install Gate on the CC-IN2P3 cluster with redhat
7.2 and
geant4 (version 5.2ref02)
When I run the command "make", I obtain the following message
:
Compiling GateAnalysis.cc ...
In file included from src/GateAnalysis.cc:85:
include/GateTrajectoryNavigator.hh:57: syntax error before
`::' token
include/GateTrajectoryNavigator.hh:69: ISO C++ forbids
declaration of
`G4std'
with no type
include/GateTrajectoryNavigator.hh:69: `G4std' declared as an
`inline' field
include/GateTrajectoryNavigator.hh:69: parse error before `::'
token
include/GateTrajectoryNavigator.hh: In member function
`G4TrajectoryContainer*
GateTrajectoryNavigator::GetTrajectoryContainer()':
include/GateTrajectoryNavigator.hh:67: `m_trajectoryContainer'
undeclared
(first use this function)
include/GateTrajectoryNavigator.hh:67: (Each undeclared
identifier is
reported
only once for each function it appears in.)
include/GateTrajectoryNavigator.hh: In function `G4int
GetPositronTrackID()':
include/GateTrajectoryNavigator.hh:71: `m_positronTrackID'
undeclared (first
use this function)
include/GateTrajectoryNavigator.hh: In function `void
SetVerboseLevel(int)':
include/GateTrajectoryNavigator.hh:75: `m_verboseLevel'
undeclared (first
use
this function)
include/GateTrajectoryNavigator.hh: At global scope:
include/GateTrajectoryNavigator.hh:77: parse error before
`protected'
include/GateTrajectoryNavigator.hh:82: syntax error before
`::' token
include/GateTrajectoryNavigator.hh:83: `G4int
m_positronTrackID' used prior
to
declaration
include/GateTrajectoryNavigator.hh:87: `G4int m_verboseLevel'
used prior to
declaration
include/GateTrajectoryNavigator.hh:88: parse error before `}'
token
In file included from include/GateVolumeID.hh:72,
from include/GateCrystalHit.hh:66,
from src/GateAnalysis.cc:92:
include/GateVObjectInserter.hh:149: syntax error before `::'
token
include/GateVObjectInserter.hh: In member function `virtual
G4int
GateVObjectInserter::GetVolumeNumber() const':
include/GateVObjectInserter.hh:119: `m_own_phys_vector'
undeclared (first
use
this function)
In file included from include/GateCrystalHit.hh:66,
Thank you for your help.
_________________________________________
Pascal CALVAT
Centre de Calcul IN2P3/CNRS - Lyon (FRANCE)
http://cc.in2p3.fr
Tel. +33 4.72.69.41.76 | Fax. +33 4.72.69.41.70 |
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Sebastien JAN - CEA DSV/DRM/SHFJ
4 pl. Général Leclerc Tel (33) 01 69 86 78 21
91406 Orsay France Fax (33) 01 69 86 77 49
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Corinne J. Groiselle, PhD
Research instructor
Division of Nuclear Medicine / Department of Radiology
University of Massachusetts Medical School
55 Lake Avenue North
Worcester, MA 01655
USA
phone: (508)-856-6123 - fax: (508)-856-4321
e-mail: Corinne.Groiselle at umassmed.edu
professional homepage: http://wachusett.umassmed.edu/~corinne/
personal homepage: http://corinne.groiselle.free.fr
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Sebastien JAN - CEA DSV/DRM/SHFJ
4 pl. Général Leclerc Tel (33) 01 69 86 78 21
91406 Orsay France Fax (33) 01 69 86 77 49
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