[gate-users] Image Reconstruction of Gate output

Long ZHANG zhanglong99 at tsinghua.org.cn
Fri Dec 31 19:15:19 CET 2004


Dear Dr. Sadek,

Great job!

I recalled Dr. Claude's suggestion on using root script to study binning
coicidences in root file into sinogram and michelogram. So I hope I can do
something to make your code, together with Dr. Ross's code, into a more generic
binning toolkit, which can support as many as possible scanner types. 

And we may porting the root code into GATE source code (of course, we need Dr.
Morel's offical authorization) in the future.

The first will be DST, which is under heat disscussion now.

Waiting for your positive response and kind help, thank you!

BTW, I was pussled by the sinogram width of DST (420 crystal per ring). The number
249 is larger than the 420/2 = 210. How can DST get the extra LORs of 39? By
interpolation? Could this help to improve the spatial resolution? Thank you!

Cheers,

Long

In your mail:
>From:"Nehmeh, Sadek/Medical Physics" <nehmehs at mskcc.org>
>Reply-To: GATE feedback and helpline for Users <gate-users at lphe1pet1.epfl.ch>
>To: "GATE feedback and helpline for Users" <gate-users at lphe1pet1.epfl.ch>,
  stir-users at lists.sourceforge.net
>Subject: [gate-users] Image Reconstruction of Gate output
>
> 
>
>	Dear Gaters, in particular GE PET users,  
>
>	Please find attached an image reconstruction tool for Gate root
>output. First untar    
>      Gate_Reconstrcution.tar (tar -xvf Gate_Reconstrcution.tar); you
>should find the following files in 
>      the Gate_Reconstrcution: 
>
>	1- GEAdvance3D_Sinogram_Bin.c
>	2- Gate_To_Stir.c
>	3- few .par files for STIR based reconstructions
>	4- README.txt
>
>
>"GEAdvance3D_Sinogram_Bin.c" is mainly to read multiple .root files and
>bin the data according to the GE Advance/DLS PET scanner. If to be used
>for the GE DST, some defined variables at the beginning of the code need
>to be modified according to the DST geometry. The DST geometry
>parameters are included in the file. The binning formulations have been
>approved by GE, and released under GE permission.
>
>"Gate_To_Stir.c" reads the GE Michelogram, and writes it in STIR format
>for the GE Advance, so that the final output may be reconstructed using
>STIR.
>
>In README.txt I tried to describe step-by-step how to run these tools,
>and reconstruct the Gate images with STIR. The attached .par files are
>modified copies from the STIR "samples" directory.
>
>
>"GEAdvance3D_Sinogram_Bin.c" also outputs the Gate data in a GE format
>that may be imported to the GE PET scanner console for reconstruction.
>If anybody is interested in doing that please le me know, so that I will
>provide you with the couple additional tools.
>
>Hope this will be helpful.
>
>P.S. Kris, I would appreciate if you may take a look at my REAME.txt
>file to make sure I'm not doing something     
>     wrong when using STIR.
>
>
>	Regards,
>
>	Sadek
>
>
>----------------------------------------
> Sadek A. Nehmeh, Ph.D.
> Assistant Attending Physicist
> Medical Physics Department
> Nuclear Medicine Service
> Memorial Sloan-Kettering Cancer Center
> Tel: (212)-639-2175
> Email: nehmehs at mskcc.org
>------------------------------------------
>
>
>
> 
>     =====================================================================
>     
>     Please note that this e-mail and any files transmitted with it may be 
>     privileged, confidential, and protected from disclosure under 
>     applicable law. If the reader of this message is not the intended 
>     recipient, or an employee or agent responsible for delivering this 
>     message to the intended recipient, you are hereby notified that any 
>     reading, dissemination, distribution, copying, or other use of this 
>     communication or any of its attachments is strictly prohibited.  If 
>     you have received this communication in error, please notify the 
>     sender immediately by replying to this message and deleting this 
>     message, any attachments, and all copies and backups from your 
>     computer.
>_______________________________________________
>gate-users mailing list
>gate-users at lphe1pet1.epfl.ch
>http://lphe1pet1.epfl.ch/mailman/listinfo/gate-users
>




More information about the Gate-users mailing list