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Dear gate users,
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<div class="">I figured out that all my simulations fail after exactly 2147483647 events, which is one below 2^31=2147483648.</div>
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<div class="">Is GATE 32-bit only or does anybody know what is going on here?</div>
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<div class="">Cheers,</div>
<div class="">Korbinian<br class="">
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<div class="">Am 21.09.2022 um 11:39 schrieb Träuble, Korbinian Linus <<a href="mailto:korbinian.traeuble@tum.de" class="">korbinian.traeuble@tum.de</a>>:</div>
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Dear all,</div>
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I’m facing some cryptic error messages in my GATE simulations. I always get some after the macro ends, but still get the desired result. So I’ve just ignored it. It <span style="caret-color: rgb(0, 0, 0);" class=""> </span><span style="caret-color: rgb(0, 0, 0);" class="">normally </span>looks
like this:</div>
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2022-09-18 12:33:15 UTC -- Run terminated.</div>
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2022-09-18 12:33:15 UTC -- Run Summary</div>
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2022-09-18 12:33:15 UTC -- Run Aborted after 1166176513 events processed.</div>
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2022-09-18 12:33:15 UTC -- User=15012.720000s Real=15049.712099s Sys=0.570000s</div>
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2022-09-18 12:33:15 UTC -- 0 events have been kept for refreshing and/or reviewing.</div>
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2022-09-18 12:33:15 UTC -- "/vis/reviewKeptEvents" to review them one by one.</div>
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2022-09-18 12:33:15 UTC -- "/vis/enable", then "/vis/viewer/flush" or "/vis/viewer/rebuild" to see them accumulated.</div>
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2022-09-18 12:33:15 UTC -- [Core-0] End of macro mac/Main_Thyroid.mac</div>
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2022-09-18 12:33:15 UTC -- Graphics systems deleted.</div>
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2022-09-18 12:33:15 UTC -- Visualization Manager deleting...</div>
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2022-09-18 12:33:15 UTC -- G4 kernel has come to Quit state.</div>
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2022-09-18 12:33:15 UTC -- </div>
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2022-09-18 12:33:15 UTC -- ### CAUGHT SIGNAL: 11 ### address: 0, signal = SIGSEGV, value = 11, description = segmentation violation. Unknown segmentation fault error: 128.</div>
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2022-09-18 12:33:15 UTC -- </div>
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2022-09-18 12:33:15 UTC -- Backtrace:</div>
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2022-09-18 12:33:15 UTC -- [PID=64, TID=-2][0/9]> Gate() [0x9cf985]</div>
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2022-09-18 12:33:15 UTC -- [PID=64, TID=-2][1/9]> Gate() [0x96d45e]</div>
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2022-09-18 12:33:15 UTC -- [PID=64, TID=-2][2/9]> Gate() [0x96d479]</div>
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2022-09-18 12:33:15 UTC -- [PID=64, TID=-2][3/9]> /software/geant4/install/lib64/libG4run.so(_ZN12G4RunManager25DeleteUserInitializationsEv+0x16) [0x7f4983ee8e76]</div>
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2022-09-18 12:33:15 UTC -- [PID=64, TID=-2][4/9]> /software/geant4/install/lib64/libG4run.so(_ZN12G4RunManagerD1Ev+0xd5) [0x7f4983ee9af5]</div>
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2022-09-18 12:33:15 UTC -- [PID=64, TID=-2][5/9]> Gate() [0x92c5c9]</div>
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2022-09-18 12:33:15 UTC -- [PID=64, TID=-2][6/9]> Gate() [0x4dd044]</div>
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2022-09-18 12:33:15 UTC -- [PID=64, TID=-2][7/9]> /usr/lib64/libc.so.6(__libc_start_main+0xf3) [0x7f4979b50493]</div>
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2022-09-18 12:33:15 UTC -- [PID=64, TID=-2][8/9]> Gate() [0x53bf0e]</div>
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2022-09-18 12:33:15 UTC -- </div>
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2022-09-18 12:33:15 UTC -- : Segmentation fault (Signal sent by the kernel [(nil)])</div>
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But currently I’m facing the problem that my simulation run perfectly fine until it terminates after 91s <span style="caret-color: rgb(0, 0, 0);" class="">(7 hours in real time) </span>of 300s with the following error message and I don’t get a result. I also
don’t know why its starting again to print the table of registered couples. For these simulations I’m using a 23MBq mono energetic 140keV gamma source.</div>
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2022-09-20 16:10:16 UTC -- Run terminated.</div>
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2022-09-20 16:10:16 UTC -- Run Summary</div>
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2022-09-20 16:10:16 UTC -- Number of events processed : 2147483647</div>
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2022-09-20 16:10:16 UTC -- User=26376.230000s Real=26453.022547s Sys=0.910000s</div>
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2022-09-20 16:10:16 UTC -- 0 events have been kept for refreshing and/or reviewing.</div>
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2022-09-20 16:10:16 UTC -- "/vis/reviewKeptEvents" to review them one by one.</div>
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2022-09-20 16:10:16 UTC -- "/vis/enable", then "/vis/viewer/flush" or "/vis/viewer/rebuild" to see them accumulated.</div>
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2022-09-20 16:10:16 UTC -- </div>
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2022-09-20 16:10:16 UTC -- ### CAUGHT SIGNAL: 11 ### address: 0x5f8, signal = SIGSEGV, value = 11, description = segmentation violation. Address not mapped to object.</div>
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2022-09-20 16:10:16 UTC -- </div>
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2022-09-20 16:10:16 UTC -- ========= Table of registered couples ============================</div>
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2022-09-20 16:10:16 UTC -- </div>
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2022-09-20 16:10:16 UTC -- Index : 0 used in the geometry : Yes</div>
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2022-09-20 16:10:16 UTC -- Material : Air</div>
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2022-09-20 16:10:16 UTC -- Range cuts : gamma 1 mm e- 1 mm e+ 1 mm proton 1 mm</div>
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2022-09-20 16:10:16 UTC -- Energy thresholds : gamma 1 keV e- 1 keV e+ 1 keV proton 100 keV</div>
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2022-09-20 16:10:16 UTC -- Region(s) which use this couple :</div>
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2022-09-20 16:10:16 UTC -- DefaultRegionForTheWorld</div>
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2022-09-20 16:10:16 UTC -- </div>
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2022-09-20 16:10:16 UTC -- Index : 1 used in the geometry : Yes</div>
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2022-09-20 16:10:16 UTC -- Material : Air</div>
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2022-09-20 16:10:16 UTC -- Range cuts : gamma 1 mm e- 1 mm e+ 1 mm proton 1 mm</div>
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2022-09-20 16:10:16 UTC -- Energy thresholds : gamma 1 keV e- 1 keV e+ 1 keV proton 100 keV</div>
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2022-09-20 16:10:16 UTC -- Region(s) which use this couple :</div>
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2022-09-20 16:10:16 UTC -- SPECThead</div>
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2022-09-20 16:10:16 UTC -- </div>
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2022-09-20 16:10:16 UTC -- Index : 2 used in the geometry : Yes</div>
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2022-09-20 16:10:16 UTC -- Material : Air</div>
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2022-09-20 16:10:16 UTC -- Range cuts : gamma 1 mm e- 1 mm e+ 1 mm proton 1 mm</div>
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2022-09-20 16:10:16 UTC -- Energy thresholds : gamma 1 keV e- 1 keV e+ 1 keV proton 100 keV</div>
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2022-09-20 16:10:16 UTC -- Region(s) which use this couple :</div>
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2022-09-20 16:10:16 UTC -- cover</div>
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2022-09-20 16:10:16 UTC -- </div>
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2022-09-20 16:10:16 UTC -- </div>
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2022-09-20 16:10:16 UTC -- Backtrace:</div>
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2022-09-20 16:10:16 UTC -- [PID=64, TID=-2][ 0/20]> Gate() [0x6395ba]</div>
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2022-09-20 16:10:16 UTC -- [PID=64, TID=-2][ 1/20]> Gate() [0x55c4a0]</div>
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2022-09-20 16:10:16 UTC -- [PID=64, TID=-2][ 2/20]> Gate() [0x860c22]</div>
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2022-09-20 16:10:16 UTC -- [PID=64, TID=-2][ 3/20]> Gate() [0x551e85]</div>
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2022-09-20 16:10:16 UTC -- [PID=64, TID=-2][ 4/20]> /software/geant4/install/lib64/libG4run.so(_ZN12G4RunManager17RunInitializationEv+0x474) [0x7fa76a3ad604]</div>
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2022-09-20 16:10:16 UTC -- [PID=64, TID=-2][ 5/20]> Gate() [0x92ebcd]</div>
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2022-09-20 16:10:16 UTC -- [PID=64, TID=-2][ 6/20]> /software/geant4/install/lib64/libG4run.so(_ZN12G4RunManager6BeamOnEiPKci+0x4d) [0x7fa76a3a860d]</div>
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2022-09-20 16:10:16 UTC -- [PID=64, TID=-2][ 7/20]> Gate() [0x8b649d]</div>
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2022-09-20 16:10:16 UTC -- [PID=64, TID=-2][ 8/20]> Gate() [0x8bb4a8]</div>
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2022-09-20 16:10:16 UTC -- [PID=64, TID=-2][ 9/20]> /software/geant4/install/lib64/libG4intercoms.so(_ZN11G4UIcommand4DoItE8G4String+0x33c) [0x7fa766151a3c]</div>
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2022-09-20 16:10:16 UTC -- [PID=64, TID=-2][10/20]> /software/geant4/install/lib64/libG4intercoms.so(_ZN11G4UImanager12ApplyCommandEPKc+0x682) [0x7fa7661696c2]</div>
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2022-09-20 16:10:16 UTC -- [PID=64, TID=-2][11/20]> /software/geant4/install/lib64/libG4intercoms.so(_ZN9G4UIbatch11ExecCommandERK8G4String+0x17) [0x7fa766141807]</div>
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2022-09-20 16:10:16 UTC -- [PID=64, TID=-2][12/20]> /software/geant4/install/lib64/libG4intercoms.so(_ZN9G4UIbatch12SessionStartEv+0x75) [0x7fa766142835]</div>
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2022-09-20 16:10:16 UTC -- [PID=64, TID=-2][13/20]> /software/geant4/install/lib64/libG4intercoms.so(_ZN11G4UImanager16ExecuteMacroFileEPKc+0x3c) [0x7fa76616ae0c]</div>
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2022-09-20 16:10:16 UTC -- [PID=64, TID=-2][14/20]> /software/geant4/install/lib64/libG4intercoms.so(_ZN20G4UIcontrolMessenger11SetNewValueEP11G4UIcommand8G4String+0x23b) [0x7fa76615eafb]</div>
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2022-09-20 16:10:16 UTC -- [PID=64, TID=-2][15/20]> /software/geant4/install/lib64/libG4intercoms.so(_ZN11G4UIcommand4DoItE8G4String+0x33c) [0x7fa766151a3c]</div>
<div style="margin: 0px; font-stretch: normal; font-size: 13px; line-height: normal; font-family: "Helvetica Neue";" class="">
2022-09-20 16:10:16 UTC -- [PID=64, TID=-2][16/20]> /software/geant4/install/lib64/libG4intercoms.so(_ZN11G4UImanager12ApplyCommandEPKc+0x682) [0x7fa7661696c2]</div>
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2022-09-20 16:10:16 UTC -- [PID=64, TID=-2][17/20]> Gate() [0x4dd569]</div>
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2022-09-20 16:10:16 UTC -- [PID=64, TID=-2][18/20]> /usr/lib64/libc.so.6(__libc_start_main+0xf3) [0x7fa760010493]</div>
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2022-09-20 16:10:16 UTC -- [PID=64, TID=-2][19/20]> Gate() [0x53bf0e]</div>
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2022-09-20 16:10:16 UTC -- </div>
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2022-09-20 16:10:16 UTC -- : Segmentation fault (Address not mapped to object [0x5f8])</div>
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2022-09-20 16:10:16 UTC -- Index : 3 used in the geometry : Yes</div>
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2022-09-20 16:10:16 UTC -- Material : Air</div>
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2022-09-20 16:10:16 UTC -- Range cuts : gamma 1 mm e- 1 mm e+ 1 mm proton 1 mm</div>
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2022-09-20 16:10:16 UTC -- Energy thresholds : gamma 1 keV e- 1 keV e+ 1 keV proton 100 keV</div>
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2022-09-20 16:10:16 UTC -- Region(s) which use this couple :</div>
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2022-09-20 16:10:16 UTC -- cover2</div>
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2022-09-20 16:10:16 UTC -- </div>
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2022-09-20 16:10:16 UTC -- Index : 4 used in the geometry : Yes</div>
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2022-09-20 16:10:16 UTC -- Material : NaITl</div>
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2022-09-20 16:10:16 UTC -- Range cuts : gamma 1 mm e- 1 mm e+ 1 mm proton 1 mm</div>
<div style="margin: 0px; font-stretch: normal; font-size: 13px; line-height: normal; font-family: "Helvetica Neue";" class="">
2022-09-20 16:10:16 UTC -- Energy thresholds : gamma 30.2503 keV e- 620.21 keV e+ 591.843 keV proton 100 keV</div>
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2022-09-20 16:10:16 UTC -- Region(s) which use this couple :</div>
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2022-09-20 16:10:16 UTC -- crystal</div>
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2022-09-20 16:10:16 UTC -- </div>
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2022-09-20 16:10:16 UTC -- Index : 5 used in the geometry : Yes</div>
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2022-09-20 16:10:16 UTC -- Material : Lead</div>
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2022-09-20 16:10:16 UTC -- Range cuts : gamma 1 mm e- 1 mm e+ 1 mm proton 1 mm</div>
<div style="margin: 0px; font-stretch: normal; font-size: 13px; line-height: normal; font-family: "Helvetica Neue";" class="">
2022-09-20 16:10:16 UTC -- Energy thresholds : gamma 101.898 keV e- 1.37707 MeV e+ 1.28764 MeV proton 100 keV</div>
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2022-09-20 16:10:16 UTC -- Region(s) which use this couple :</div>
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2022-09-20 16:10:16 UTC -- collimator</div>
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2022-09-20 16:10:16 UTC -- </div>
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2022-09-20 16:10:16 UTC -- Index : 6 used in the geometry : Yes</div>
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2022-09-20 16:10:16 UTC -- Material : Air</div>
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2022-09-20 16:10:16 UTC -- Range cuts : gamma 1 mm e- 1 mm e+ 1 mm proton 1 mm</div>
<div style="margin: 0px; font-stretch: normal; font-size: 13px; line-height: normal; font-family: "Helvetica Neue";" class="">
2022-09-20 16:10:16 UTC -- Energy thresholds : gamma 1 keV e- 1 keV e+ 1 keV proton 100 keV</div>
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2022-09-20 16:10:16 UTC -- Region(s) which use this couple :</div>
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2022-09-20 16:10:16 UTC -- hole1</div>
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2022-09-20 16:10:16 UTC -- </div>
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2022-09-20 16:10:16 UTC -- Index : 7 used in the geometry : Yes</div>
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2022-09-20 16:10:16 UTC -- Material : Water</div>
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2022-09-20 16:10:16 UTC -- Range cuts : gamma 1 mm e- 1 mm e+ 1 mm proton 1 mm</div>
<div style="margin: 0px; font-stretch: normal; font-size: 13px; line-height: normal; font-family: "Helvetica Neue";" class="">
2022-09-20 16:10:16 UTC -- Energy thresholds : gamma 2.93516 keV e- 351.296 keV e+ 341.588 keV proton 100 keV</div>
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2022-09-20 16:10:16 UTC -- Region(s) which use this couple :</div>
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2022-09-20 16:10:16 UTC -- box2</div>
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2022-09-20 16:10:16 UTC -- </div>
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2022-09-20 16:10:16 UTC -- ==================================================================</div>
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2022-09-20 16:10:16 UTC -- </div>
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2022-09-20 16:10:16 UTC -- ### Run 0 starts.</div>
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I’m using the opengatecollaboration/gate:latest docker image and it runs on a Polyaxon cluster. Is this a GATE problem and does anybody know how to solve it?</div>
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Kind regards,</div>
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Korbinian</div>
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