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<p class="MsoNormal"><i><span style="color:#1F497D">Hi all<o:p></o:p></span></i></p>
<p class="MsoNormal"><i><span style="color:#1F497D"><o:p> </o:p></span></i></p>
<p class="MsoNormal"><i><span style="color:#1F497D">Apologies if this double posts. I tried to post it last night but can’t see it on the list myself, and then I found it in my Outlook drafts (as well as sent items) when logging in on a different computer.
I thought I would post again in case it was a genuine fail the first time.</span></i><span style="color:#1F497D"><o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Hi everyone<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I’ve got some code which seems to run beautifully when playing with Digimouse data. However, I’ve created a version of the digimouse PT data using 3D slicer where I have used the atlas to segment the heart and masked everything outside
this to 0 – my intent is that I’ve effectively got PT data where every emission occurs from the heart. This data is then saved in the same Analyze (hdr/img) format that the digimouse data originally started life as. Looking at the headers in imageJ, the new
masked file does have a few extra fields but everything else matches accordingly.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Unfortunately, when running this simulation, just after building the Reference Physics List QGSP_BERT, it crashes with the following error:<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">G4VUserPhysicsList::SetDefaultCutValue: negative cut values :-1[mm]<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">### Adding tracking cuts for neutron TimeCut(ns)= 10000 KinEnergyCut(MeV)= 0<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">Terminate called after throwing an instance of ‘std::length_error’<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Courier New"">What(): vector::_M_default_append<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">This then aborts my bash script which is running the mac. I’ve searched online and found a post in the archives whereby someone else got a similar std::length_error but that was resolved by removing a space in the file name. I don’t have
any spaces in my filenames so I’m not sure it is the same cause. I suspect it might be something to do with the Physics.mac but I don’t know what. I can run the exact same script and select the original digimouse Analyze data and it seems to be fine. I don’t
actually care about neutrons in my simulation either.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Any help would be gratefully appreciated!<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Thank you<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><b><span style="color:#006871;mso-fareast-language:EN-GB">Mark Baker<o:p></o:p></span></b></p>
<p class="MsoNormal"><span style="color:#006871;mso-fareast-language:EN-GB">Principal Clinical Scientist<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#006871;mso-fareast-language:EN-GB">Imaging Physics (Ionising)<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#006871;mso-fareast-language:EN-GB">The Clatterbridge Cancer Centre NHS Foundation Trust<o:p></o:p></span></p>
<p class="MsoNormal"><i><span style="color:#006871;mso-fareast-language:EN-GB">(he, him)<o:p></o:p></span></i></p>
<p class="MsoNormal"><b><span style="color:#006871;mso-fareast-language:EN-GB"><o:p> </o:p></span></b></p>
<p class="MsoNormal"><span style="color:#006871;mso-fareast-language:EN-GB">CCCW Tel: 0151 556 5030
<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#006871;mso-fareast-language:EN-GB">CCCL Tel: 0151 318 8438<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#006871;mso-fareast-language:EN-GB">Email:
</span><span style="color:#4472C4;mso-fareast-language:EN-GB"><a href="mailto:mark.baker23@nhs.net"><span style="color:#4472C4">mark.baker23@nhs.net</span></a></span><span style="color:#006871;mso-fareast-language:EN-GB">
<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#4472C4;mso-fareast-language:EN-GB"><a href="https://teams.microsoft.com/l/chat/0/0?users=mark.baker23@nhs.net"><span style="color:#4472C4">Microsoft Teams (click here)</span></a><o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-GB"> <span style="color:#006871"><o:p></o:p></span></span></p>
<p class="MsoNormal"><i><span style="color:#006871;mso-fareast-language:EN-GB">Honorary Lecturer, Dept. of Physics<o:p></o:p></span></i></p>
<p class="MsoNormal"><i><span style="color:#006871;mso-fareast-language:EN-GB">University of Liverpool<o:p></o:p></span></i></p>
<p class="MsoNormal"><span style="color:#006871;mso-fareast-language:EN-GB"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-GB"><img border="0" width="624" height="163" style="width:6.5in;height:1.6979in" id="Picture_x0020_3" src="cid:image002.jpg@01D8BE25.4BF25630" alt="CCC email footer April 2021"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-GB"><o:p> </o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
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