<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Dear all,<div class="">The name of the VM has just been changed</div><div class=""><br class=""></div><div class="">Best</div><div class=""><br class=""></div><div class="">Lydia<br class=""><div><br class=""><blockquote type="cite" class=""><div class="">Le 7 sept. 2021 à 22:31, Josh Knowland <<a href="mailto:jknowland@lucernodynamics.com" class="">jknowland@lucernodynamics.com</a>> a écrit :</div><br class="Apple-interchange-newline"><div class=""><meta charset="UTF-8" class=""><div class="WordSection1" style="page: WordSection1; caret-color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; text-decoration: none;"><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class="">This is true. I actually did this within the past few days. The filename incorrectly says 8.2, but the VM is 9.<o:p class=""></o:p></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><o:p class=""> </o:p></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class="">Josh<o:p class=""></o:p></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><o:p class=""> </o:p></div><div class=""><div style="border-style: solid none none; border-top-width: 1pt; border-top-color: rgb(225, 225, 225); padding: 3pt 0in 0in;" class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><b class="">From:</b><span class="Apple-converted-space"> </span>Gate-users <<a href="mailto:gate-users-bounces@lists.opengatecollaboration.org" style="color: blue; text-decoration: underline;" class="">gate-users-bounces@lists.opengatecollaboration.org</a>><span class="Apple-converted-space"> </span><b class="">On Behalf Of<span class="Apple-converted-space"> </span></b>David Leibold<br class=""><b class="">Sent:</b><span class="Apple-converted-space"> </span>Tuesday, September 7, 2021 4:15 PM<br class=""><b class="">To:</b><span class="Apple-converted-space"> </span>BAKER, Mark (THE CLATTERBRIDGE CANCER CENTRE NHS FOUNDATION TRUST) <<a href="mailto:mark.baker23@nhs.net" style="color: blue; text-decoration: underline;" class="">mark.baker23@nhs.net</a>><br class=""><b class="">Cc:</b><span class="Apple-converted-space"> </span><a href="mailto:gate-users@lists.opengatecollaboration.org" style="color: blue; text-decoration: underline;" class="">gate-users@lists.opengatecollaboration.org</a><br class=""><b class="">Subject:</b><span class="Apple-converted-space"> </span>Re: [Gate-users] GateMaterials.db issues (now with added download problems)<o:p class=""></o:p></div></div></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><o:p class=""> </o:p></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class="">Hi Mark,<span class="Apple-converted-space"> </span><o:p class=""></o:p></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><o:p class=""> </o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class="">I am pretty sure that only the filename of the .ova file is not correct; it does, in fact, contain a virtual machine with Gate v9.0. Do you mind setting up a machine with the vGATE_ v8.2.0.ova file and check whether this actually true? <o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><o:p class=""> </o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class="">Kind regards,<o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class="">David<o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><o:p class=""> </o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><o:p class=""> </o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><br class=""><br class=""><o:p class=""></o:p></div><blockquote style="margin-top: 5pt; margin-bottom: 5pt;" class=""><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class="">On 2 Sep2021, at 10:23, BAKER, Mark (THE CLATTERBRIDGE CANCER CENTRE NHS FOUNDATION TRUST) <<a href="mailto:mark.baker23@nhs.net" style="color: blue; text-decoration: underline;" class="">mark.baker23@nhs.net</a>> wrote:<o:p class=""></o:p></div></div><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><o:p class=""> </o:p></div><div class=""><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(31, 73, 125);" class="">Hi everyone</span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(31, 73, 125);" class=""> </span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(31, 73, 125);" class="">I still haven’t resolved this issue, so I thought I’d try and start afresh with a new version of vGate9.0 but when I go to<span class="apple-converted-space"> </span><a href="http://opengatecollaboration.org/" style="color: blue; text-decoration: underline;" class=""><span style="color: rgb(149, 79, 114);" class="">opengatecollaboration.org</span></a><span class="apple-converted-space"> </span>to the Download page, the link for version 9.0 takes you to a GoogleDrive page but for vGATE_v8.2.0.ova (a previous emailer had the same issue on the mailbase also). The<span class="apple-converted-space"> </span><a href="http://opengate.readthedocs.io/en/latest/vgate.html" style="color: blue; text-decoration: underline;" class=""><span style="color: rgb(149, 79, 114);" class="">opengate.readthedocs.io/en/latest/vgate.html</span></a><span class="apple-converted-space"> </span>also has the same v8.2 file as the direct link</span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(31, 73, 125);" class=""> </span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(31, 73, 125);" class="">I’ve got vGate9.0 installed on my machine, so I must have got it from somewhere originally. Has anyone got any suggestions?</span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(31, 73, 125);" class=""> </span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(31, 73, 125);" class="">Thank you</span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(31, 73, 125);" class=""> </span><o:p class=""></o:p></div></div><div class=""><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><b class=""><span style="color: rgb(0, 104, 113);" class="">Mark Baker</span></b><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(0, 104, 113);" class="">Principal Clinical Physicist</span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(0, 104, 113);" class="">Imaging Physics</span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(0, 104, 113);" class="">The Clatterbridge Cancer Centre NHS Foundation Trust</span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><b class=""><span style="color: rgb(0, 104, 113);" class=""> </span></b><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(0, 104, 113);" class="">CCCW Tel: 0151 556 5030<span class="apple-converted-space"> </span></span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(0, 104, 113);" class="">CCCL Tel: 0151 318 8438</span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(0, 104, 113);" class="">Email:<span class="apple-converted-space"> </span><a href="mailto:mark.baker23@nhs.net" style="color: blue; text-decoration: underline;" class="">mark.baker23@nhs.net</a></span><o:p class=""></o:p></div></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(31, 73, 125);" class=""> </span><o:p class=""></o:p></div></div><div class=""><div style="border-style: solid none none; border-top-width: 1pt; border-top-color: rgb(225, 225, 225); padding: 3pt 0in 0in;" class=""><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><b class="">From:</b><span class="apple-converted-space"> </span>Gate-users <<a href="mailto:gate-users-bounces@lists.opengatecollaboration.org" style="color: blue; text-decoration: underline;" class=""><span style="color: rgb(149, 79, 114);" class="">gate-users-bounces@lists.opengatecollaboration.org</span></a>><span class="apple-converted-space"> </span><b class="">On Behalf Of<span class="apple-converted-space"> </span></b>BAKER, Mark (THE CLATTERBRIDGE CANCER CENTRE NHS FOUNDATION TRUST)<br class=""><b class="">Sent:</b><span class="apple-converted-space"> </span>26 August 2021 16:12<br class=""><b class="">To:</b><span class="apple-converted-space"> </span><a href="mailto:gate-users@lists.opengatecollaboration.org" style="color: blue; text-decoration: underline;" class=""><span style="color: rgb(149, 79, 114);" class="">gate-users@lists.opengatecollaboration.org</span></a><br class=""><b class="">Subject:</b><span class="apple-converted-space"> </span>[Gate-users] GateMaterials.db issues<o:p class=""></o:p></div></div></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""> <o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(31, 73, 125);" class="">Hi everyone</span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(31, 73, 125);" class=""> </span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(31, 73, 125);" class="">I’ve spent the day scratching my head over something that I think is likely a pretty simple fix. I’ve come back to vGate 9.0 after around a year away, so I was refreshing myself with some old macros I wrote and I get an issue regarding setting the materials database, using both my own previously working macro plus trying an inbuilt ex1.mac file as well. Both files generate the following message:</span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(31, 73, 125);" class=""> </span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(31, 73, 125);" class="">***G4 Exception : GateMDBFile</span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(31, 73, 125);" class=""> Issued by : GateMDBFile::GateMDBFile</span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(31, 73, 125);" class="">Could not find material database file ‘data/GateMaterials.db’</span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(31, 73, 125);" class="">***Fatal Exception *** Core Dump ***</span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(31, 73, 125);" class="">[G4-cerr] **** Track information is not available at this moment</span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(31, 73, 125);" class="">[G4-cerr] **** Step information is not available at this moment</span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(31, 73, 125);" class=""> </span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(31, 73, 125);" class="">A quick look through the mailing list suggests that it’s possible that the macros should direct to /data/… rather than data/ but changing that didn’t help. Additional suggests previously included unspecified material in the macro that isn’t in the database, but ex1.mac only utilises water and my own macro only uses air and water. I’ve checked that they are both in the database, and both are correctly spelled (it is the default database as well). The macropath has been changed to /home/gate/gate-exercises/exercises which is the location of both the data and mac folders.</span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(31, 73, 125);" class=""> </span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(31, 73, 125);" class="">Any ideas?</span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(31, 73, 125);" class=""> </span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(31, 73, 125);" class="">Thank you</span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(31, 73, 125);" class=""> </span><o:p class=""></o:p></div></div><div class=""><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><b class=""><span style="color: rgb(0, 104, 113);" class="">Mark Baker</span></b><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(0, 104, 113);" class="">Principal Clinical Physicist</span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(0, 104, 113);" class="">Imaging Physics</span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(0, 104, 113);" class="">The Clatterbridge Cancer Centre NHS Foundation Trust</span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><b class=""><span style="color: rgb(0, 104, 113);" class=""> </span></b><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(0, 104, 113);" class="">CCCW Tel: 0151 556 5030<span class="apple-converted-space"> </span></span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(0, 104, 113);" class="">CCCL Tel: 0151 318 8438</span><o:p class=""></o:p></div></div><div class=""><div style="margin: 0in; font-size: 11pt; font-family: Calibri, sans-serif;" class=""><span style="color: rgb(0, 104, 113);" class="">Email:<span class="apple-converted-space"> </span><a href="mailto:mark.baker23@nhs.net" style="color: blue; text-decoration: underline;" class="">mark.baker23@nhs.net</a></span><o:p class=""></o:p></div></div></div><p class="MsoNormal" style="margin: 0in 0in 12pt; font-size: 11pt; font-family: Calibri, sans-serif;"><span style="font-size: 12pt; font-family: "Times New Roman", serif;" class=""><br class=""></span><span style="font-size: 10pt; font-family: "Courier New";" class=""><br class="">************************************************************************************** ******************************<br class=""><br class="">This message may contain confidential information. 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<meta charset="UTF-8" class=""><div>************************************************************<br class="">Lydia Maigne, PhD<br class=""><br class="">Laboratoire de Physique de Clermont<br class="">UMR 6533 CNRS/IN2P3 - Université Clermont Auvergne<br class=""><br class="">Campus Universitaire des Cézeaux<br class="">4, avenue Blaise Pascal<br class="">TSA 60026<br class="">CS 60026<br class="">63178 - Aubière Cedex<br class="">FRANCE<br class=""><br class="">Tel: (33) (0) 4 73 40 51 23<br class=""><a href="mailto:Lydia.Maigne@clermont.in2p3.fr" class="">email: Lydia.Maigne@clermont.in2p3.fr</a><br class="">Website: http://see.lpc.uca.fr<br class="">************************************************************</div><div class=""><br class=""></div><br class="Apple-interchange-newline">
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