<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-7">
<style type="text/css" style="display:none;"> P {margin-top:0;margin-bottom:0;} </style>
</head>
<body dir="ltr">
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
Dear Konstantinos, </div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
Thanks, this is what I was looking for. I check the optical physics flag and the optical physics seems turned ON. However, I have an issue with generating optical photons. I have a source in which I emit a 511 keV photon towards a scintillation material and
although the material properties are correct, and the optical physics list is enabled, no optical photons are generated. Do you know why this is happening? Initially, I thought that the optical physics flag in GATE was turned OFF but it seems is ON, therefore
my assumption was wrong. </div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
Best</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
Theo</div>
<div>
<div id="Signature">
<div>
<div id="divtagdefaultwrapper" dir="ltr" style="font-size:12pt; color:#000000; font-family:Calibri,Helvetica,sans-serif">
<p style="margin-top: 0px; margin-bottom: 0px;"></p>
</div>
</div>
</div>
</div>
<div>
<div id="appendonsend"></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<br>
</div>
<hr tabindex="-1" style="display:inline-block; width:98%">
<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" color="#000000" style="font-size:11pt"><b>From:</b> Konstantinos P. Chatzipapas <konhat88@yahoo.gr><br>
<b>Sent:</b> 26 March 2021 17:49<br>
<b>To:</b> Theodoros Christodoulou <theodoros.christodoulou@outlook.com>; Xinjie Cao <xinjie.cao@stonybrook.edu><br>
<b>Cc:</b> gate-users@lists.opengatecollaboration.org <gate-users@lists.opengatecollaboration.org><br>
<b>Subject:</b> Re: [Gate-users] Virtual machine GATE ccmake</font>
<div> </div>
</div>
<div>
<div class="x_ydp67d34fc9yahoo-style-wrap" style="font-family:courier new,courier,monaco,monospace,sans-serif; font-size:13px">
<div>
<div dir="ltr">Hello Theo,</div>
<div dir="ltr"><br>
</div>
<div dir="ltr">Are you looking for this:</div>
<div dir="ltr"><img title="Ενσωματωμένη εικόνα" alt="Ενσωματωμένη εικόνα" class="x_yahoo-inline-image" style="max-width:800px; width:100%" data-outlook-trace="F:1|T:1" src="cid:7815165d-8121-416a-812b-10021159b1aa"><br>
<span></span><br>
</div>
<div dir="ltr">This is on vGate_v8.2, but probably it is the same with vGate_v9.0.</div>
<div dir="ltr"><br>
</div>
<div dir="ltr"><br>
</div>
<div dir="ltr">Regards,</div>
<div dir="ltr">Konstantinos</div>
<div><br>
</div>
<div class="x_ydp67d34fc9signature">
<div style="font-family:courier,monaco,monospace,sans-serif; font-size:13px">
<div style="color:rgb(0,0,0); font-family:Arial; font-size:16px; font-style:normal; font-weight:normal; letter-spacing:normal; orphans:2; text-indent:0px; text-transform:none; white-space:normal; widows:2; word-spacing:0px">
<span style="font-style:italic">-----------------------------------------------------</span></div>
<span style="color:rgb(0,0,0); font-family:Arial; font-size:16px; font-weight:normal; letter-spacing:normal; orphans:2; text-indent:0px; text-transform:none; white-space:normal; widows:2; word-spacing:0px; font-style:italic"> Konstantinos Chatzipapas<br>
Medical Physicist, </span><span style="color:rgb(0,0,0); font-family:Arial; font-size:16px; font-weight:normal; letter-spacing:normal; orphans:2; text-indent:0px; text-transform:none; white-space:normal; widows:2; word-spacing:0px; font-style:italic">MSc<br>
</span>
<div style="color:rgb(0,0,0); font-family:Arial; font-size:16px; font-style:normal; font-weight:normal; letter-spacing:normal; orphans:2; text-indent:0px; text-transform:none; white-space:normal; widows:2; word-spacing:0px">
<div><span style="font-style:italic"> <span style="font-weight:bold">University of Patras</span></span></div>
<div><span style="font-style:italic"><span style="font-weight:bold"><br>
</span></span></div>
<div dir="ltr"><span style="font-style:italic"><span style="font-weight:bold"> web: <a href="http://physicsfeed.blogspot.com/" target="_blank" rel="noreferrer noopener">Physics Magazine</a></span></span></div>
</div>
</div>
</div>
</div>
<div><br>
</div>
<div><br>
</div>
</div>
<div id="x_yahoo_quoted_7185747203" class="x_yahoo_quoted">
<div style="font-family:'Helvetica Neue',Helvetica,Arial,sans-serif; font-size:13px; color:#26282a">
<div>Στις Παρασκευή, 26 Μαρτίου 2021, 05:54:51 μ.μ. EET, ο χρήστης Xinjie Cao <xinjie.cao@stonybrook.edu> έγραψε:
</div>
<div><br>
</div>
<div><br>
</div>
<div>
<div id="x_yiv2718989017">
<div>
<div dir="ltr">Hi Theodoros,
<div><br clear="none">
</div>
<div>I am not sure whether I am understanding your question correctly, what I got from your question is that you cannot find your gate-build folder? Is that correct? And if you cannot find your gate-build folder, how did you snapshot that ccmake GUI? Or that
snapshot is an example you found on the internet?</div>
<div><br clear="none">
</div>
<div>From my understanding of your question, the "Gate-build folder" should be the folder you create for installing GATE, it is not there only if you create it. And after you set the installation path to another Gate-install file, you could ccmake your Gate-build
file.</div>
<div><br clear="none">
</div>
<div>Hope this helps!</div>
<div><br clear="none">
</div>
<div>Best,</div>
<div>Xinjie</div>
<div><br clear="none">
</div>
<div><br clear="none">
</div>
</div>
<br clear="none">
<div class="x_yiv2718989017gmail_quote">
<div class="x_yiv2718989017yqt9698269034" id="x_yiv2718989017yqt46215">
<div class="x_yiv2718989017gmail_attr" dir="ltr">On Fri, Mar 26, 2021 at 11:46 AM Theodoros Christodoulou <<a shape="rect" href="mailto:theodoros.christodoulou@outlook.com" target="_blank" rel="noreferrer noopener">theodoros.christodoulou@outlook.com</a>> wrote:<br clear="none">
</div>
<blockquote class="x_yiv2718989017gmail_quote" style="margin:0px 0px 0px 0.8ex; border-left:1px solid rgb(204,204,204); padding-left:1ex">
<div dir="ltr">
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
Hi, </div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<br clear="none">
</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
I am using the virtual machine GATE 9.0. I want to access the ccmake flags so I can check what is ON and what is OFF (see image attached). I cannot find the gate-build folder so I can ccmake and check it in the virtual machine. Does anyone know where is located
so I can check the flags?</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<br clear="none">
</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
Best</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
Theo</div>
<div>
<div id="x_yiv2718989017gmail-m_7048206242313724557Signature">
<div dir="ltr" id="x_yiv2718989017gmail-m_7048206242313724557divtagdefaultwrapper" style="font-size:12pt; color:rgb(0,0,0); font-family:Calibri,Helvetica,sans-serif">
<div style="color:rgb(33,33,33); font-family:Tahoma,Arial,sans-serif,serif,EmojiFont; font-size:15px">
</div>
<span id="x_yiv2718989017gmail-m_7048206242313724557ms-rterangepaste-end"></span><br clear="none">
<p style="margin-top:0px; margin-bottom:0px"></p>
</div>
</div>
</div>
</div>
_______________________________________________<br clear="none">
Gate-users mailing list<br clear="none">
<a shape="rect" href="mailto:Gate-users@lists.opengatecollaboration.org" target="_blank" rel="noreferrer noopener">Gate-users@lists.opengatecollaboration.org</a><br clear="none">
<a shape="rect" href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank" rel="noreferrer noopener">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a></blockquote>
</div>
</div>
<br clear="all">
<div><br clear="none">
</div>
-- <br clear="none">
<div class="x_yiv2718989017gmail_signature" dir="ltr">
<div dir="ltr">
<div dir="ltr">
<div dir="ltr">
<div dir="ltr">
<div dir="ltr">
<div dir="ltr">
<div dir="ltr">
<div dir="ltr">
<div dir="ltr">
<div dir="ltr">
<div><b><font color="#000000">....................................................</font></b><br clear="none">
</div>
<div><b><span style="color:rgb(153,0,0); font-family:sans-serif; font-size:x-small">Xinjie Cao</span></b><br clear="none">
</div>
<div><b><font size="1" face="arial black, sans-serif">M.Eng. / Ph.D. Candidate</font></b></div>
<div><b><font size="1" face="arial black, sans-serif">Research Project Assistant</font></b></div>
<div><b><font size="1" face="arial black, sans-serif">Department of Electrical and Computer Engineering & Radiology </font></b></div>
<div><b><font size="1" face="arial black, sans-serif">Novel Medical Imaging Technologies Lab</font></b></div>
<div><b><font size="1" face="arial black, sans-serif">Health Science Center Level 8</font></b></div>
<div><b><font size="1" face="arial black, sans-serif">Stony Brook, NY 11794-8460 </font></b></div>
<div><b><font size="1" face="arial black, sans-serif">Tel: +1 (631)202-9445</font></b></div>
<div><a shape="rect" href="https://you.stonybrook.edu/goldan/people/" target="_blank" rel="noreferrer noopener">you.stonybrook.edu/goldan/people/</a><b><font size="1" face="arial black, sans-serif"><br clear="none">
</font></b></div>
<div><font size="1" face="arial black, sans-serif"><b>email: </b><a shape="rect" href="mailto:xinjie.cao@stonybrook.edu" target="_blank" rel="noreferrer noopener"><b>xinjie.cao@stonybroo</b>k.edu</a></font></div>
<div><font size="1" face="arial black, sans-serif"><br clear="none">
</font></div>
<div><font size="1" face="arial black, sans-serif"> </font><img width="200" height="28" src="https://docs.google.com/uc?export=download&id=12iMPAuaMtpKRdkcmBleVsP6iWiM4wlm_&revid=0B_TLWOu4jP1eWnFFRW9qQXlicTY3ZTVzWnR5QkRVY3RRT3JVPQ"> <img width="200" height="33" src="https://drive.google.com/a/stonybrook.edu/uc?id=17TB1Ha3enD8HC5e_Ez238vpeBF92aCgH&export=download"></div>
<div>
<div><b><font color="#000000">....................................................</font></b></div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
<div class="x_yqt9698269034" id="x_yqt22489">_______________________________________________<br clear="none">
Gate-users mailing list<br clear="none">
<a shape="rect" href="mailto:Gate-users@lists.opengatecollaboration.org" target="_blank" rel="noreferrer noopener">Gate-users@lists.opengatecollaboration.org</a><br clear="none">
<a shape="rect" href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank" rel="noreferrer noopener">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a></div>
</div>
</div>
</div>
</div>
</div>
</body>
</html>