<div dir="ltr">Hello, <div><br></div><div>sorry for that, we are in the middle of the process to renew the benchmarks, and, apparently there are some issues with the VM. (We had troubles with the MIDAS site that hosted the data). </div><div><br></div><div>We should be able to provide more robust benchmarks in the future!</div><div><br></div><div>thanks</div><div>David</div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Tue, Dec 8, 2020 at 1:37 PM BAKER, Mark (THE CLATTERBRIDGE CANCER CENTRE NHS FOUNDATION TRUST) <<a href="mailto:mark.baker23@nhs.net">mark.baker23@nhs.net</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
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<p class="MsoNormal"><span style="font-size:11pt;font-family:Calibri,sans-serif;color:rgb(31,73,125)">Hi Raven<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11pt;font-family:Calibri,sans-serif;color:rgb(31,73,125)"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-size:11pt;font-family:Calibri,sans-serif;color:rgb(31,73,125)">I am a very similar boat to yourself really. I’m very new to Gate myself, so hopefully someone with more expertise will be along very
shortly. However, I have found the same thing as you for both VGate9.0 and 8.2. I did manage to find the benchmark folder in the 7.2 version (I didn’t check the 8.0 and 8.1 versions).
<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11pt;font-family:Calibri,sans-serif;color:rgb(31,73,125)"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-size:11pt;font-family:Calibri,sans-serif;color:rgb(31,73,125)">Whilst I haven’t managed to get the benchmarks running quite yet (it claims that the bench_gamma-reference.tgz file isn’t present so
I need to make some adjustments to ccmake apparently which VGate is claiming isn’t installed), I have managed to get the terminal to at least recognise my attempts at running ./gate_run_test.sh<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11pt;font-family:Calibri,sans-serif;color:rgb(31,73,125)"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-size:11pt;font-family:Calibri,sans-serif;color:rgb(31,73,125)">My plan for this afternoon is to attempt to extract these documents from the 7.2 version and import them into my 9.0 version, and see
how that goes.<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11pt;font-family:Calibri,sans-serif;color:rgb(31,73,125)"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-size:11pt;font-family:Calibri,sans-serif;color:rgb(31,73,125)">Thank you
<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11pt;font-family:Calibri,sans-serif;color:rgb(31,73,125)"><u></u> <u></u></span></p>
<div>
<p class="MsoNormal"><b><span style="font-size:11pt;font-family:Calibri,sans-serif;color:rgb(0,104,113)">Mark Baker<u></u><u></u></span></b></p>
<p class="MsoNormal"><span style="font-size:11pt;font-family:Calibri,sans-serif;color:rgb(0,104,113)">Senior Clinical Physicist<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11pt;font-family:Calibri,sans-serif;color:rgb(0,104,113)">Imaging Physics<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11pt;font-family:Calibri,sans-serif;color:rgb(0,104,113)">The Clatterbridge Cancer Centre NHS Foundation Trust<u></u><u></u></span></p>
<p class="MsoNormal"><b><span style="font-size:11pt;font-family:Calibri,sans-serif;color:rgb(0,104,113)"><u></u> <u></u></span></b></p>
<p class="MsoNormal"><span style="font-size:11pt;font-family:Calibri,sans-serif;color:rgb(0,104,113)">CCCW Tel: 0151 556 5030
<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11pt;font-family:Calibri,sans-serif;color:rgb(0,104,113)">CCCL Tel: 0151 318 8438<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11pt;font-family:Calibri,sans-serif;color:rgb(0,104,113)">Email:
<a><span style="color:blue">mark.baker23@nhs.net</span></a>
<u></u><u></u></span></p>
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<p class="MsoNormal"><span style="font-size:11pt;font-family:Calibri,sans-serif;color:rgb(31,73,125)"><u></u> <u></u></span></p>
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<p class="MsoNormal"><b><span lang="EN-US" style="font-size:11pt;font-family:Calibri,sans-serif">From:</span></b><span lang="EN-US" style="font-size:11pt;font-family:Calibri,sans-serif"> Gate-users <<a>gate-users-bounces@lists.opengatecollaboration.org</a>>
<b>On Behalf Of </b>Barnes, Raven<br>
<b>Sent:</b> 07 December 2020 16:33<br>
<b>To:</b> <a>gate-users@lists.opengatecollaboration.org</a><br>
<b>Subject:</b> [Gate-users] Can't find benchmark tests<u></u><u></u></span></p>
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<p class="MsoNormal"><span style="font-family:Calibri,sans-serif;color:black">Hello there!<u></u><u></u></span></p>
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<p class="MsoNormal"><span style="font-family:Calibri,sans-serif;color:black">I am an undergraduate intern with Physical Sciences Inc in Andover, MA. I am currently working with vGATE v9.0 through virtualbox. I downloaded from your website but can't seem
to find the benchmarks folder. Even when I click on the gate home folder, there is no subsequent folder labelled "prog" as the documentation says. I believe I have been able to open vGATE but when I type in: ./gate_run_test.sh benchRT gamma, like the instructions
say, it says command </gate_run_test.sh benchRT gamma> not found.<u></u><u></u></span></p>
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<p class="MsoNormal"><span style="font-family:Calibri,sans-serif;color:black"> I am not sure if I am missing the files because I don't seem to have the programs folder that is mentioned in the html documentation or if I am typing something in wrong/searching
in the wrong place.<u></u><u></u></span></p>
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<p class="MsoNormal"><span style="font-family:Calibri,sans-serif;color:black">Thank you!<u></u><u></u></span></p>
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<p class="MsoNormal"><span style="font-family:Calibri,sans-serif;color:black">Raven Barnes<u></u><u></u></span></p>
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<p class="MsoNormal"><span style="font-family:Calibri,sans-serif;color:black"><u></u> <u></u></span></p>
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<a rel="noreferrer">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a></blockquote></div><br clear="all"><div><br></div>-- <br><div dir="ltr" class="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr">David Sarrut, Phd<br>Directeur de recherche CNRS<br>CREATIS, UMR CNRS 5220, Inserm U1206<div>Centre de lutte contre le cancer Léon Bérard<br>28 rue Laënnec, 69373 Lyon cedex 08<br>Tel : 04 78 78 51 51 / 06 74 72 05 42<br><a href="http://www.creatis.insa-lyon.fr/~dsarrut" target="_blank">http://www.creatis.insa-lyon.fr/~dsarrut</a><br>_________________________________</div><div> "2 + 2 = 5, for extremely large values of 2"<br>_________________________________</div></div></div></div></div></div></div>