<p>
        Dear <span style="display:inline !important;float:none;background-color:#FFFFFF;color:#000000;font-family:"宋体",arial,Verdana,sans-serif;font-size:14px;font-style:normal;font-variant:normal;font-weight:400;letter-spacing:normal;orphans:2;text-align:left;text-decoration:none;text-indent:0px;text-transform:none;-webkit-text-stroke-width:0px;white-space:normal;word-spacing:0px;">Somayeh Asadi,</span>
</p>
<p>
        Thank you very much! It really helps me!
</p>
<p>
        <br>
</p>
<p>
        Best regards,
</p>
<p>
        Hui Zhang<br>
<br>
</p>
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        -----原始邮件-----<br>
<b>发件人:</b><span id="rc_from">"Somayeh Asadi" <somayeh.asadi@polimi.it></span><br>
<b>发送时间:</b><span id="rc_senttime">2020-05-28 20:31:39 (星期四)</span><br>
<b>收件人:</b> "张晖" <zhanghui@impcas.ac.cn><br>
<b>抄送:</b> "gate-users@lists.opengatecollaboration.org" <gate-users@lists.opengatecollaboration.org><br>
<b>主题:</b> Re: Re: [Gate-users] Gate-users Digest, Vol 168, Issue 42<br>
<br>
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        <div style="font-family:Calibri, Arial, Helvetica, sans-serif;font-size:12pt;color:#000000;">
                Dear <span style="color:#201F1E;font-family:"Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, BlinkMacSystemFont, Roboto, "Helvetica Neue", sans-serif;font-size:15px;background-color:#FFFFFF;display:inline !important;">Hui
 Zhang</span> 
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                <span style="color:#201F1E;font-family:"Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, BlinkMacSystemFont, Roboto, "Helvetica Neue", sans-serif;font-size:15px;background-color:#FFFFFF;display:inline !important;">Sorry,
 I didn't notice the last line of your message. </span> 
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                <span style="color:#201F1E;font-family:"Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, BlinkMacSystemFont, Roboto, "Helvetica Neue", sans-serif;font-size:15px;background-color:#FFFFFF;display:inline !important;"><br>
</span> 
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                <span style="color:#201F1E;font-family:"Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, BlinkMacSystemFont, Roboto, "Helvetica Neue", sans-serif;font-size:15px;background-color:#FFFFFF;display:inline !important;">This
 link may be useful for you: </span> 
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                <span style="color:#201F1E;font-family:"Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, BlinkMacSystemFont, Roboto, "Helvetica Neue", sans-serif;font-size:15px;background-color:#FFFFFF;display:inline !important;"><br>
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                <span style="color:#201F1E;font-family:"Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, BlinkMacSystemFont, Roboto, "Helvetica Neue", sans-serif;font-size:15px;background-color:#FFFFFF;display:inline !important;"><a href="https://www.creatis.insa-lyon.fr/rio/vv-clitk#clitkDicom2Image">https://www.creatis.insa-lyon.fr/rio/vv-clitk#clitkDicom2Image</a><br>
</span> 
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                <br>
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                Best 
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                                                <span style="margin:0px;font-size:11pt;color:#757B80;font-family:"Times New Roman",Times,serif;"><i>Somayeh Asadi (PhD)</i></span> 
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                                                <span style="margin:0px;font-size:11pt;color:#757B80;font-family:"Times New Roman",Times,serif;"><i>Postdoctoral Researcher </i></span> 
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                                                <i style="color:#757B80;font-family:"Times New Roman",Times,serif;font-size:11pt;font-variant-ligatures:inherit;font-variant-caps:inherit;font-weight:inherit;">Department of Mechanical Engineering</i> 
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                                                <i style="color:#757B80;font-family:"Times New Roman",Times,serif;font-size:11pt;font-variant-ligatures:inherit;font-variant-caps:inherit;font-weight:inherit;">Politecnico di Milano, Italy</i> 
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                                                <span style="color:#757B80;font-family:"Times New Roman",Times,serif;font-size:9pt;"><br>
</span> 
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                                        <div style="margin:0px;font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;text-align:start;background-color:#FFFFFF;">
                                                <span style="color:#757B80;font-family:"Times New Roman",Times,serif;font-size:9pt;">Via Giuseppe La Masa,1</span><br>
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                                        <span style="color:#757B80;font-size:9pt;font-family:"Times New Roman",Times,serif;">20156 - Milano - Italy</span><br>
<span style="color:#757B80;font-size:9pt;font-family:"Times New Roman",Times,serif;">phone: +39 0223998572</span><br>
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                                                        <span style="margin:0px;font-size:11pt;font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;"></span><span style="margin:0px;font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;"></span><span style="margin:0px;font-size:11pt;font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;"></span><span style="margin:0px;font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;"></span><span style="margin:0px;font-size:11pt;font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;"></span><span style="margin:0px;font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;"></span><span style="margin:0px;font-size:11pt;font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;"></span><span style="margin:0px;font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;color:#757B80;"></span><span style="margin:0px;font-size:11pt;font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;"></span><span style="margin:0px;font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;"></span><span style="margin:0px;font-size:11pt;font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;"></span><span style="margin:0px;font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;"></span><span style="margin:0px;font-size:10pt;font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;"></span><span style="margin:0px;font-size:11pt;font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;"></span><span style="margin:0px;font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;color:#757B80;"></span><span style="margin:0px;font-size:11pt;font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;"></span><span style="margin:0px;font-size:10pt;font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;"></span><span style="margin:0px;font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;"></span><span style="margin:0px;font-size:10pt;font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;"></span><span style="margin:0px;font-size:11pt;font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;"></span><span style="margin:0px;font-size:10pt;font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;"></span><span style="margin:0px;font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols;"></span> 
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                                                        <span style="margin:0px;font-size:10pt;color:#757B80;font-family:"Times New Roman",Times,serif;">somayeh.asadi@polimi.</span><span style="margin:0px;font-size:10pt;color:#757B80;">it</span> 
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                <span style="font-size:11pt;font-family:'Calibri, sans-serif';color:#000000;"><b>From:</b> 张晖 <zhanghui@impcas.ac.cn><br>
<b>Sent:</b> Thursday, May 28, 2020 2:19 PM<br>
<b>To:</b> Somayeh Asadi <somayeh.asadi@polimi.it><br>
<b>Cc:</b> gate-users@lists.opengatecollaboration.org <gate-users@lists.opengatecollaboration.org><br>
<b>Subject:</b> Re: Re: [Gate-users] Gate-users Digest, Vol 168, Issue 42</span> 
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                        Dear Somayeh Asadi,
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                        Thanks for your attention! I know how to use VV software, I just want to know how to use those clitk* application programs, such as clitkDicomRTPlan2Gate,clitkSum,and so on. Do you have some advice for that?
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                        Best regards,
                </p>
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                        Hui Zhang
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                        -----原始邮件-----<br>
<b>发件人:</b><span id="x_rc_from">"Somayeh Asadi" <somayeh.asadi@polimi.it></span><br>
<b>发送时间:</b><span id="x_rc_senttime">2020-05-28 18:27:12 (星期四)</span><br>
<b>收件人:</b> "gate-users@lists.opengatecollaboration.org" <gate-users@lists.opengatecollaboration.org><br>
<b>抄送:</b> <br>
<b>主题:</b> Re: [Gate-users] Gate-users Digest, Vol 168, Issue 42<br>
<br>
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                                <span style="color:#201F1E;font-size:14.6667px;background-color:#FFFFFF;display:inline!important;">Dear Hui Zhang</span><br>
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                                <span style="color:#201F1E;font-size:14.6667px;background-color:#FFFFFF;display:inline!important;">What do you mean from executing when you said you run it. If I understood correct :</span> 
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                                <span style="color:#201F1E;font-size:14.6667px;background-color:#FFFFFF;display:inline!important;">Open the terminal in the folder where your image is placed in, then type vv in the terminal, and click enter. Your image will be open in the VV software. It
 has tools that you can get help from but if you had any questions about working with it feel free to ask. </span> 
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                                <span style="color:#201F1E;font-size:14.6667px;background-color:#FFFFFF;display:inline!important;">Best </span> 
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                                                                <span style="margin:0px;font-size:11pt;color:#757B80;font-family:"Times New Roman",Times,serif;"><i>Somayeh Asadi (PhD)</i></span> 
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                                                                <span style="margin:0px;font-size:11pt;color:#757B80;font-family:"Times New Roman",Times,serif;"><i>Postdoctoral Researcher </i></span> 
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                                                                <i style="color:#757B80;font-family:"Times New Roman",Times,serif;font-size:11pt;font-variant-ligatures:inherit;font-variant-caps:inherit;font-weight:inherit;">Department of Mechanical Engineering</i> 
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                                                                <i style="color:#757B80;font-family:"Times New Roman",Times,serif;font-size:11pt;font-variant-ligatures:inherit;font-variant-caps:inherit;font-weight:inherit;">Politecnico di Milano, Italy</i> 
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                                                                        <span style="margin:0px;font-size:10pt;color:#757B80;font-family:"Times New Roman",Times,serif;">somayeh.asadi@polimi.</span><span style="margin:0px;font-size:10pt;color:#757B80;">it</span> 
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                                <span style="font-size:11pt;font-family:'Calibri, sans-serif';color:#000000;"><b>From:</b> Gate-users <gate-users-bounces@lists.opengatecollaboration.org> on behalf of gate-users-request@lists.opengatecollaboration.org <gate-users-request@lists.opengatecollaboration.org><br>
<b>Sent:</b> Thursday, May 28, 2020 12:00 PM<br>
<b>To:</b> gate-users@lists.opengatecollaboration.org <gate-users@lists.opengatecollaboration.org><br>
<b>Subject:</b> Gate-users Digest, Vol 168, Issue 42</span> 
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Today's Topics:<br>
<br>
   1. Replacing gps with phase-space file of gps emissions      not<br>
      working... (Steven Marsh)<br>
   2. VV software (张晖)<br>
<br>
<br>
----------------------------------------------------------------------<br>
<br>
Message: 1<br>
Date: Thu, 28 May 2020 05:37:18 +0000<br>
From: Steven Marsh <steven.marsh@canterbury.ac.nz><br>
To: "gate-users@lists.opengatecollaboration.org"<br>
        <gate-users@lists.opengatecollaboration.org><br>
Subject: [Gate-users] Replacing gps with phase-space file of gps<br>
        emissions       not working...<br>
Message-ID:<br>
        <81C2FA1FAFEA9E45B25965A260B811D6011B55C0A4@UCEXMBX01-D.canterbury.ac.nz><br>
        <br>
Content-Type: text/plain; charset="utf-8"<br>
<br>
<br>
Hi All<br>
<br>
A quick query about the use of phase-space files (PSF).  A summary of the following is that I can collect projection data for my SPECT simulation if I use, for example a spherical source of Tc-99m, but as soon as I collect a PSF from the spherical gps source
 and then use that PSF as the source, I no longer get counts on my SPECT camera. This is not what I was expecting and assume I have made an error so I have included what I believe to be the essential pieces of code below...<br>
<br>
So, I can use the following source definition and successfully collect photon counts (an image of a circle)  in my simulated SPECT system<br>
<br>
/gate/source/addSource source gps<br>
/gate/source/source/gps/particle gamma<br>
/gate/source/source/gps/type Volume<br>
/gate/source/source/gps/shape Sphere<br>
/gate/source/source/gps/radius 25 mm<br>
/gate/source/source/gps/angtype iso<br>
/gate/source/source/gps/energytype UserSpectrum<br>
/gate/source/source/gps/setSpectrumFile data/energy_spectrum_Tc99m.txt<br>
/gate/source/source/setForcedHalfLife 242343.36 s<br>
/gate/source/source/setActivity {ACTIVITY} MBq<br>
/gate/source/source/gps/centre 0 0 0 mm<br>
<br>
<br>
I can also encapsulate this source within a sphere and produce a PSF of photons exiting the sphere<br>
<br>
/gate/actor/addActor                         PhaseSpaceActor PhS_g<br>
/gate/actor/PhS_g/attachTo                   phsSphere<br>
/gate/actor/PhS_g/save                                     output/PhS-Gamma-{ACTIVITY}MBq.root<br>
/gate/actor/PhS_g/useVolumeFrame             true  #Not using world coordinates<br>
/gate/actor/PhS_g/storeOutgoingParticles     true<br>
/gate/actor/PhS_g/enableParticleName         false<br>
/gate/actor/PhS_g/enableProductionVolume     false<br>
/gate/actor/PhS_g/enableProductionProcess    false<br>
/gate/actor/PhS_g/addFilter                  particleFilter<br>
/gate/actor/PhS_g/particleFilter/addParticle gamma<br>
/gate/actor/PhS_g/enableZPosition            true<br>
#/gate/actor/PhS_g/saveEveryNSeconds          20<br>
<br>
<br>
Inspection of the PSF produced with root suggests that this works correctly (many 0.14 MV photons exit the sphere and these are visualisable when used as a source in the next bit of code) - but the problem arises when I place the PHS for the sphere into the
 identical SPECT simulation and use it to replace the original point source.  The issue is I get essentially no counts on the SPECT camera (a few random dots appear only).  My code for including the PSF is the following (note, when I include this I remove the
 gps definition for the source above)<br>
<br>
/gate/source/addSource                            src_Heart phaseSpace<br>
/gate/source/src_Heart/addPhaseSpaceFile          data/PhSData/PhS-Gamma-{ACTIVITY}MBq.root<br>
/gate/source/src_Heart/setParticleType            gamma<br>
/gate/source/src_Heart/attachTo                   boundingVolume<br>
/gate/source/src_Heart/useRandomSymmetry          true<br>
<br>
/gate/source/src_Heart/setForcedHalfLife  21624.12 s  #6.0 hrs<br>
/gate/source/src_Heart/setForcedUnstableFlag true<br>
/gate/source/src_Heart/setForcedHalfLife 21624.12 s<br>
/gate/source/src_Heart/setActivity {ACTIVITY} MBq<br>
<br>
<br>
Am I doing things correctly?  I have tried to disentangle it all and it appears to me as though the SPECT detector (as defined in the gate-examples and modified and tested successfully for tc-99m) recognizes and counts photons from the gps as per above but
 not for the PSF source as I have included it.<br>
<br>
As always any assistance to show me the error of my ways is greatly appreciated :)<br>
<br>
Best wishes<br>
Steve<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
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------------------------------<br>
<br>
Message: 2<br>
Date: Thu, 28 May 2020 14:53:08 +0800 (GMT+08:00)<br>
From: 张晖 <zhanghui@impcas.ac.cn><br>
To: gate-users@lists.opengatecollaboration.org<br>
Subject: [Gate-users] VV software<br>
Message-ID: <302a9943.f8eb.1725a0e5780.Coremail.zhanghui@impcas.ac.cn><br>
Content-Type: text/plain; charset="utf-8"<br>
<br>
Dear Gate user,<br>
<br>
I have installed VV software on ubantu and win10 platforms,and can run VV successfully, but I don't know how to execute<br>
<br>
other tools like "clitk*" from VV software.Can anyone help me?<br>
<br>
<br>
<br>
Best regards,<br>
Hui Zhang<br>
<br>
<br>
<br>
<br>
<br>
<br>
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------------------------------<br>
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Subject: Digest Footer<br>
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------------------------------<br>
<br>
End of Gate-users Digest, Vol 168, Issue 42<br>
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                Zhang Hui
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                        University of Chinese Academy of Sciences
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                        Institute of Modern Physics<br>
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Zhang Hui
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        University of Chinese Academy of Sciences
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        Institute of Modern Physics<br>
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