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<p><span lang="EN-US" style="font-size:11.0pt;line-height:120%;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">Dear Hui Zhang</span><span lang="EN-US">,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">If I understand your issue, you are trying to reproduce the behavior of the PBS source using the TPS source.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">In this case, I would suggest to place a phase space right after particle generation of both the PBS and the TPS source
and analyze the particle position distribution (mean position and standard deviation), particle angular distribution (mean angle and standard deviation), energy distribution (mean energy and energy spread), in order to verify that both source provide the same
output.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">Be careful about units: for example the energy spread can be given in absolute MeV or as percentage of the mean energy.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">Hope this helps.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="FR" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Best,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="FR" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D">Loïc<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><b><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif">From:</span></b><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif">
</span><span style="font-size:11.0pt;font-family:"Microsoft JhengHei",sans-serif">张晖</span><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif"> [mailto:zhanghui@impcas.ac.cn]
<br>
<b>Sent:</b> Montag, 25. Mai 2020 03:57<br>
<b>To:</b> Grevillot Loic <loic.grevillot@medaustron.at><br>
<b>Cc:</b> gate-users@lists.opengatecollaboration.org<br>
<b>Subject:</b> Re: RE: [Gate-users] TPS Pencil Beam Source setting<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p>Dear Loïc, <o:p></o:p></p>
<p>Thanks for your advice! It really helps to enhance my understanding about the TPS Pencil Beam Source from the link you provided. My confusion is that how to set the parameters in Source-Properties.txt file of TPS Pencil Beam Source, if I want to make the
dose distributions in water consistent with the results from Pencil Beam Source setting.
<o:p></o:p></p>
<p>In Pencil Beam Source simulation, the source position was located before the vacuum window and a water box was located at isocenter. The<span lang="EN-US" style="font-family:SimSun"> energy spread, spot size (x and y), divergence (theta and phi), beam emittance(x-theta,y-phi)
were set to 0.1% of the respective energy,3 mm,4 mrad and 15 mm</span><span style="font-family:SimSun">·<span lang="EN-US">mrad. All beams are converging.</span></span><span lang="EN-US">
</span><o:p></o:p></p>
<p><span lang="EN-US" style="font-family:SimSun">In TPS Pencil Beam Source simulation, "Nozzle exit to Isocenter distance" was set to the position of the vacuum window.</span><span lang="EN-US">
</span><o:p></o:p></p>
<p><span lang="EN-US" style="font-family:SimSun">However, I find that the dose distributions with these two sources in water box were different, such as percentage depth dose (PDD).</span><span lang="EN-US">
</span><o:p></o:p></p>
<p><span lang="EN-US" style="font-family:SimSun">Now, I doubt that my parameter settings in TPS Pencil Beam Source simulation might be wrong. How can I do?</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p>#################Pencil Beam Source######################################## <o:p>
</o:p></p>
<p># SOURCE PBS<br>
/gate/source/addSource C12 PencilBeam<br>
<br>
#particle type<br>
/gate/source/C12/setParticleType GenericIon<br>
/gate/source/C12/setIonProperties 6 12 6 0<br>
<br>
#energy spectrum<br>
/gate/source/C12/setEnergy 2687.52 MeV<br>
/gate/source/C12/setSigmaEnergy 2.68752 MeV<br>
<br>
#position<br>
/gate/source/C12/setPosition 0 0 -1.4059 m<br>
<br>
# spot size<br>
/gate/source/C12/setSigmaX 3 mm<br>
/gate/source/C12/setSigmaY 3 mm<br>
<br>
#divergence<br>
/gate/source/C12/setSigmaTheta 4 mrad<br>
/gate/source/C12/setSigmaPhi 4 mrad<br>
<br>
#emittance<br>
/gate/source/C12/setEllipseXThetaEmittance 15 mm*mrad<br>
/gate/source/C12/setEllipseYPhiEmittance 15 mm*mrad<br>
<br>
#positive-> converging beam; negative diverging beam<br>
/gate/source/C12/setEllipseXThetaRotationNorm positive<br>
/gate/source/C12/setEllipseYPhiRotationNorm positive <o:p></o:p></p>
<p>#################TPS Pencil Beam Source-Source-properties########################################
<o:p></o:p></p>
<p># Source properties<br>
<br>
# Nozzle exit to Isocenter distance<br>
1365.4<br>
# SMX to Isocenter distance<br>
4000<br>
# SMY to Isocenter distance<br>
4000<br>
<br>
# ENERGY<br>
# mean energy<br>
# polynomial order<br>
1<br>
# polynomial parameters (highest to lowest)<br>
1<br>
0<br>
<br>
# energy spread<br>
# polynomial order<br>
percent<br>
1<br>
# polynomial parameters (highest to lowest)<br>
0.001<br>
0<br>
<br>
# SPOT x y theta phi<br>
# x<br>
# polynomial order<br>
1<br>
# polynomial parameters<br>
0<br>
3<br>
# Theta<br>
# polynomial order<br>
1<br>
# polynomial parameters<br>
0<br>
0.004<br>
# y<br>
# polynomial order<br>
1<br>
# polynomial parameters<br>
0<br>
3<br>
# Phi<br>
# polynomial order<br>
1<br>
# polynomial parameters<br>
0<br>
0.004<br>
<br>
# SPOT emmittances<br>
# x-theta emmittance<br>
# polynomial order<br>
1<br>
# polynomial parameters<br>
0<br>
0.015<br>
# y-phi emmittance<br>
# polynomial order<br>
1<br>
# polynomial parameters<br>
0<br>
0.015 <o:p></o:p></p>
<p><o:p> </o:p></p>
<p>Best regards, <o:p></o:p></p>
<p>Hui Zhang <o:p></o:p></p>
<p><o:p> </o:p></p>
<p>-----<span style="font-family:"Calibri",sans-serif">原始</span><span style="font-family:"Microsoft JhengHei",sans-serif">邮件</span>-----
<o:p></o:p></p>
<blockquote style="border:none;border-left:solid #B6B6B6 1.5pt;padding:0cm 0cm 0cm 4.0pt;margin-left:3.75pt;margin-top:5.0pt;margin-right:0cm;margin-bottom:5.0pt" name="replyContent">
<p class="MsoNormal" style="margin-bottom:12.0pt"><b><span style="font-family:"Microsoft JhengHei",sans-serif">发件人</span>:</b>"Grevillot Loic" <<a href="mailto:loic.grevillot@medaustron.at">loic.grevillot@medaustron.at</a>><br>
<b><span style="font-family:"Microsoft JhengHei",sans-serif">发送时间</span>:</b>2020-05-20 15:58:44 (<span style="font-family:"Calibri",sans-serif">星期三</span>)<br>
<b><span style="font-family:"Calibri",sans-serif">收件人</span>:</b> jbaran <<a href="mailto:jbaran@ifj.edu.pl">jbaran@ifj.edu.pl</a>>, "<span style="font-family:"Microsoft JhengHei",sans-serif">张晖</span>" <<a href="mailto:zhanghui@impcas.ac.cn">zhanghui@impcas.ac.cn</a>><br>
<b><span style="font-family:"Calibri",sans-serif">抄送</span>:</b> "<a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a>" <<a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a>><br>
<b><span style="font-family:"Calibri",sans-serif">主</span></b><b><span style="font-family:"Microsoft JhengHei",sans-serif">题</span>:</b> RE: [Gate-users] TPS Pencil Beam Source setting<o:p></o:p></p>
<div>
<p class="MsoPlainText"><span lang="EN-US">Dear both,</span><span lang="EN-US"> </span>
<o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US"> </span><span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">I was having a short look at your discussion and I do not exactly get your issue, but I would like to provide a few hints if it may help:</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US"> </span><span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoPlainText" style="margin-left:36.0pt;text-indent:-18.0pt"><span lang="EN-US">1.</span><span lang="EN-US" style="font-size:7.0pt;line-height:120%">
</span><span lang="EN-US">In the TPS source, one can set the following option to true or false, depending if you want the beam to be diverging or converging:</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText" style="margin-left:72.0pt;text-indent:-18.0pt"><span lang="EN-US" style="font-family:"Courier New"">o</span><span lang="EN-US" style="font-size:7.0pt;line-height:120%">
</span><span lang="EN-US">/gate/source/PBS/setBeamConvergence true (or false)</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US"> </span><span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoPlainText" style="margin-left:72.0pt"><img border="0" width="868" height="203" id="Picture_x0020_1" src="cid:image001.jpg@01D63273.EA5B05F0"><o:p></o:p></p>
<p class="MsoListParagraph"><span lang="EN-US"> </span><span lang="EN-US"> </span>
<o:p></o:p></p>
<p class="MsoPlainText" style="margin-left:72.0pt;text-indent:-18.0pt"><span lang="EN-US" style="font-family:"Courier New"">o</span><span lang="EN-US" style="font-size:7.0pt;line-height:120%">
</span><span lang="EN-US">If you use this option, I do not understand why you would need to change the source code or recompile? Just use the setBeamConvergence option.</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoListParagraph"><span lang="EN-US"> </span><span lang="EN-US"> </span>
<o:p></o:p></p>
<p class="MsoPlainText" style="margin-left:72.0pt;text-indent:-18.0pt"><span lang="EN-US" style="font-family:"Courier New"">o</span><span lang="EN-US" style="font-size:7.0pt;line-height:120%">
</span><span lang="EN-US">For a more detailed understanding of the TPS source, you can run the validation tests provided in the
<a href="https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2FOpenGATE%2FGateContrib%2Ftree%2Fmaster%2FGATE-RTion%2FTPSPencilBeamSource&data=02%7C01%7Cloic.grevillot%40medaustron.at%7C1edaae2a222148f8c00e08d8004edbf6%7Cadb749e06dfd4f6fbea8cd9f8e0c9b89%7C0%7C0%7C637259686014018643&sdata=xLX9CVJctppYj3XdbC5%2FoqHibxbRMB170pSSrj5Sb8w%3D&reserved=0">
GATE-RTion folder</a> of the GitContrib repository of GATE</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoListParagraph"><span lang="EN-US"> </span><span lang="EN-US"> </span>
<o:p></o:p></p>
<p class="MsoPlainText" style="margin-left:36.0pt;text-indent:-18.0pt"><span lang="EN-US">2.</span><span lang="EN-US" style="font-size:7.0pt;line-height:120%">
</span><span lang="EN-US">If despite changing this option, the beam is always diverging, it may simply be that you define your beam properties at the waist position… then in that case the beam can only diverge.</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText" style="margin-left:72.0pt;text-indent:-18.0pt"><span lang="EN-US" style="font-family:"Courier New"">o</span><span lang="EN-US" style="font-size:7.0pt;line-height:120%">
</span><img border="0" width="562" height="322" id="Picture_x0020_2" src="cid:image002.png@01D63273.EA5B05F0" alt="/coremail/s?func=mbox:getComposeData&sid=HAfrCzTTWITexzfcKvTTNfJLaFflOAjO&composeId=1590138788883&attachId=2"><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US"> </span><span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US"> </span><span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">Hope this helps?</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">
<o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="FR">Best,</span><span lang="FR">
</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto"><span lang="FR">Loïc</span><span lang="FR">
</span><o:p></o:p></p>
<p class="MsoNormal" style="mso-margin-top-alt:auto;mso-margin-bottom-alt:auto">
<o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US"> </span><span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US"> </span><span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US"> </span><span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">-----Original Message-----<br>
From: Gate-users [<a href="mailto:gate-users-bounces@lists.opengatecollaboration.org">mailto:gate-users-bounces@lists.opengatecollaboration.org</a>] On Behalf Of jbaran<br>
Sent: Dienstag, 19. Mai 2020 12:17<br>
To: </span><span style="font-family:"Microsoft JhengHei",sans-serif">张晖</span><span lang="EN-US"> <<a href="mailto:zhanghui@impcas.ac.cn">zhanghui@impcas.ac.cn</a>><br>
Cc: <a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a><br>
Subject: Re: [Gate-users] TPS Pencil Beam Source setting</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US"> </span><span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">Dear Hui Zhang,</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US"> </span><span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">maybe this is trivial (I am sorry if I write obvious things), but I want to clarify it. Whenever you change the source code of GATE you have to recompile it. Assuming you have GATE ver.8.2, you have to go to the directory
gate_v8.2-build</span><span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">(</span><a href="https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fopengate.readthedocs.io%2Fen%2Flatest%2Fcompilation_instructions.html%23compilation-instructions-label&data=02%7C01%7Cloic.grevillot%40medaustron.at%7C1edaae2a222148f8c00e08d8004edbf6%7Cadb749e06dfd4f6fbea8cd9f8e0c9b89%7C0%7C0%7C637259686014018643&sdata=pPHl7%2F9oeRTwgl3ECehWni9Rl49mXm0sGN%2FwWYxDRJ4%3D&reserved=0"><span lang="EN-US" style="color:windowtext;text-decoration:none">https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fopengate.readthedocs.io%2Fen%2Flatest%2Fcompilation_instructions.html%23compilation-instructions-label&data=02%7C01%7Cloic.grevillot%40medaustron.at%7C7689c7e6677d4cbf737908d7fbdde75d%7Cadb749e06dfd4f6fbea8cd9f8e0c9b89%7C0%7C0%7C637254802831509937&sdata=phmMjoqNL9dXmsyN0zzMkFvqzDJjZ8NHMK%2BT2I5J98Y%3D&reserved=0</span></a>
<o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">this is for GATE 9.0 but the procedure is very similar) and run again</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">commands:</span><span lang="EN-US"> </span>
<o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US"> </span><span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">make -jN (N is the number of processor(s) in your PC) make install</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US"> </span><span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">you don't have to build it from the scratch and run commands like ccmake and others, just two commands will be enough (I belive only 'make install' would be sufficient but run both just to be sure). Due to the fact
you changed just one file the compilation will be very fast not as it was in case of first compilation.</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US"> </span><span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">If you did that already, could you please provide example 2D dose distribution images?</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US"> </span><span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">Jakub</span><span lang="EN-US"> </span>
<o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US"> </span><span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US"> </span><span lang="EN-US"> </span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">On 2020-05-19 11:54, </span><span style="font-family:"Microsoft JhengHei",sans-serif">张晖</span><span lang="EN-US"> wrote:</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> Dear Jakub,</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> The attachment is the percentage depth dose distribution in water box.</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> I just changed the default values on true in
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> GateSourceTPSPencilBeam.cc file,and run my code again. Did you mean
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> reinstall the Gate 8.2?</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> </span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> </span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > -----</span><span style="font-family:"Calibri",sans-serif">原始</span><span style="font-family:"Microsoft JhengHei",sans-serif">邮件</span><span lang="EN-US">-----</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > </span><span style="font-family:"Microsoft JhengHei",sans-serif">发件人</span><span lang="EN-US">: jbaran <</span><a href="mailto:jbaran@ifj.edu.pl"><span lang="EN-US" style="color:windowtext;text-decoration:none">jbaran@ifj.edu.pl</span></a><span lang="EN-US">></span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > </span><span style="font-family:"Microsoft JhengHei",sans-serif">发送时间</span><span lang="EN-US">: 2020-05-19 17:29:00 (</span><span style="font-family:"Calibri",sans-serif">星期二</span><span lang="EN-US">)</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > </span><span style="font-family:"Calibri",sans-serif">收件人</span><span lang="EN-US">: "</span><span style="font-family:"Microsoft JhengHei",sans-serif">张晖</span><span lang="EN-US">" <</span><a href="mailto:zhanghui@impcas.ac.cn"><span lang="EN-US" style="color:windowtext;text-decoration:none">zhanghui@impcas.ac.cn</span></a><span lang="EN-US">>
> </span><span style="font-family:"Calibri",sans-serif">抄送</span><span lang="EN-US">:
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> </span><a href="mailto:gate-users@lists.opengatecollaboration.org"><span lang="EN-US" style="color:windowtext;text-decoration:none">gate-users@lists.opengatecollaboration.org</span></a>
<o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > </span><span style="font-family:"Calibri",sans-serif">主</span><span style="font-family:"Microsoft JhengHei",sans-serif">题</span><span lang="EN-US">: Re: [Gate-users] TPS Pencil Beam Source setting > >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> Dear Hui Zhang, > > just to check, did you recompile the GATE
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> once again? Could you please > explain if the differences are in
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> spatial distribution or the spatial > distribution of the doses is
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> consistent and the differences are in the > values?</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText">> > <o:p></o:p></p>
<p class="MsoPlainText">> > Jakub <o:p></o:p></p>
<p class="MsoPlainText">> > <o:p></o:p></p>
<p class="MsoPlainText">> > <o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > On 2020-05-19 11:13, </span><span style="font-family:"Microsoft JhengHei",sans-serif">张晖</span><span lang="EN-US"> wrote:</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> Dear Jakub</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> I used Gate 8.2 for simulation.In
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> GateSourceTPSPencilBeam.cc, the beam > >> is divergent by
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> default, and I have changed the default values on > >> true.
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> However, it dosen't work in my case.</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText">> > >> #=====================================================
<o:p></o:p></p>
<p class="MsoPlainText">> > >> # BEAMS <o:p></o:p></p>
<p class="MsoPlainText">> > >> #=====================================================
<o:p></o:p></p>
<p class="MsoPlainText">> > >> /gate/source/addSource PBS TPSPencilBeam > >>
<o:p></o:p></p>
<p class="MsoPlainText">> /gate/source/PBS/setParticleType GenericIon > >>
<o:p></o:p></p>
<p class="MsoPlainText">> /gate/source/PBS/setIonProperties 6 12 6 0 > >>
<o:p></o:p></p>
<p class="MsoPlainText">> /gate/source/PBS/setTestFlag false > >> <o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> /gate/source/PBS/setPlan data/PlanDescriptionToGATE.txt > >>
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> #/gate/source/PBS/setNotAllowedFieldID 1 > >>
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> #/gate/source/PBS/setNotAllowedFieldID 2 > >>
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> /gate/source/PBS/setFlatGenerationFlag false > >>
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> /gate/source/PBS/setSpotIntensityAsNbIons true > >>
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> /gate/source/PBS/setSortedSpotGenerationFlag false > >>
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> /gate/source/PBS/setSigmaEnergyInMeVFlag false > >>
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> /gate/source/PBS/setSourceDescriptionFile</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> data/Source-Properties.txt</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> /gate/source/PBS/setBeamConvergence true > >>
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> This is my part of code in main.mac file.</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText">> > >> <o:p></o:p></p>
<p class="MsoPlainText">> > >> <o:p></o:p></p>
<p class="MsoPlainText">> > >> > -----<span style="font-family:"Calibri",sans-serif">原始</span><span style="font-family:"Microsoft JhengHei",sans-serif">邮件</span>-----
<o:p></o:p></p>
<p class="MsoPlainText">> > >> > <span style="font-family:"Microsoft JhengHei",sans-serif">
发件人</span>: jbaran <<a href="mailto:jakub.baran@ifj.edu.pl"><span style="color:windowtext;text-decoration:none">jakub.baran@ifj.edu.pl</span></a>> > >>
<o:p></o:p></p>
<p class="MsoPlainText">> > <span style="font-family:"Microsoft JhengHei",sans-serif">
发送时间</span>: 2020-05-19 16:34:13 (<span style="font-family:"Calibri",sans-serif">星期二</span>)
<o:p></o:p></p>
<p class="MsoPlainText">> > >> > <span style="font-family:"Calibri",sans-serif">
收件人</span>: "<span style="font-family:"Microsoft JhengHei",sans-serif">张晖</span>" <<a href="mailto:zhanghui@impcas.ac.cn"><span style="color:windowtext;text-decoration:none">zhanghui@impcas.ac.cn</span></a>> > >>
<o:p></o:p></p>
<p class="MsoPlainText">> > <span style="font-family:"Calibri",sans-serif">抄送</span>:
<a href="mailto:gate-users@lists.opengatecollaboration.org"><span style="color:windowtext;text-decoration:none">gate-users@lists.opengatecollaboration.org</span></a>
<o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > </span><span style="font-family:"Calibri",sans-serif">主</span><span style="font-family:"Microsoft JhengHei",sans-serif">题</span><span lang="EN-US">: Re: [Gate-users] TPS Pencil Beam Source setting
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > >> > Dear Hui Zhang, > >>
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > > >> > I am not sure which version of GATE you are
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> using but from my > >> experience > >> > it seems
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> that when you are using Pencil Beam source you are able > >>
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> to set > >> > if your beam is divergent or convergent and
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> you are using > >> convergent > >> > beam from
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> what I see in your souce code. In case of TPS source > >> the
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> beam > >> > is divergent by default > >> >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >></span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> (</span><a href="https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgit"><span lang="EN-US" style="color:windowtext;text-decoration:none">https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgit</span></a>
<o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> hub.com%2FOpenGATE%2FGate%2Fblob%2Fdevelop%2Fsource%2Fphysics%2Fsrc%2F</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> GateSourceTPSPencilBeam.cc&data=02%7C01%7Cloic.grevillot%40medaust</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> ron.at%7C7689c7e6677d4cbf737908d7fbdde75d%7Cadb749e06dfd4f6fbea8cd9f8e</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> 0c9b89%7C0%7C0%7C637254802831519922&sdata=YQQt8kRb6F9Xf%2BYiVkouea</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> 6hf%2BUO0ErAb6eZ0%2FWswZM%3D&reserved=0</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > - lines: 60 and 61), for sure in GATE 8.2 and 9.0
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> and I pressume > >> for all > >> > of GATE
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> versions is the case but you have to check it with your > >>
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> version.</span><span lang="EN-US"> </span>
<o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > In my case I just change the default values on true</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> (lines: 60</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> and 61)</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > and recompile GATE once again. Please let us know
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> if it works in > >> your > >> > case.</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> ></span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > All the best,</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText">> > >> > Jakub <o:p></o:p></p>
<p class="MsoPlainText">> > >> > <o:p></o:p></p>
<p class="MsoPlainText">> > >> > <o:p></o:p></p>
<p class="MsoPlainText">> > >> > <o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > On 2020-05-19 10:19,
</span><span style="font-family:"Microsoft JhengHei",sans-serif">张晖</span><span lang="EN-US"> wrote:</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText">> > >> > > Dear Gate Users: <o:p></o:p></p>
<p class="MsoPlainText">> > >> > > <o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > I previously used Pencil Beam Source to
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> simulate > >> single-energy pencil > >> > >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> beam for carbon-ion therapy. The features of the pencil beam >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> >> source > >> > > such as spot size, divergence
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> and beam emittance were > >> defined as > >> >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > follows: 3 mm spot size in both x and y directions, 4 mrad >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> >> divergence > >> > > and 15 mm·mrad beam
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> emittance. The energy spread was set to > >> 0.1% of >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> >> > > the respective energy. Except for dipole scanning
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> magnets,vacuum pipe > >> > > and window,
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> main and sub-dose monitors, a multi-strip > >> ionization
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > chamber (IC) and a mini ridge filter were
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> modeled in my MC > >> > > simulations. The source
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> position was located before the > >> vacuum window >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> >> > > and a water box was located at isocenter.</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText">> > >> > > <o:p></o:p></p>
<p class="MsoPlainText">> > >> > > #################Pencil Beam > >>
<o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> > > Source########################################</span><span lang="FR">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> > >> > ></span><span lang="FR">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> > >> > > # SOURCE PBS</span><span lang="FR">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> > >> > > /gate/source/addSource C12 PencilBeam >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> >> > > > >> > > #particle type >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> >> > > /gate/source/C12/setParticleType GenericIon >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> >> > > /gate/source/C12/setIonProperties 6 12 6 0 >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> >> > > > >> > > #energy spectrum >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> >> > > /gate/source/C12/setEnergy 2687.52 MeV >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> >> > > /gate/source/C12/setSigmaEnergy 2.68752 MeV >
</span><o:p></o:p></p>
<p class="MsoPlainText">> >> > > > >> > > #position > >>
<o:p></o:p></p>
<p class="MsoPlainText">> > > /gate/source/C12/setPosition 0 0 -1.4059 m > >>
<o:p></o:p></p>
<p class="MsoPlainText">> > > > >> > > # spot size > >> > >
<o:p></o:p></p>
<p class="MsoPlainText">> /gate/source/C12/setSigmaX 3 mm > >> > >
<o:p></o:p></p>
<p class="MsoPlainText">> /gate/source/C12/setSigmaY 3 mm > >> > > > >>
<o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> > > #divergence > >> > >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> /gate/source/C12/setSigmaTheta 4 mrad > >> > >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> /gate/source/C12/setSigmaPhi 4 mrad > >> > > >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> >> > > #emittance > >> > >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> /gate/source/C12/setEllipseXThetaEmittance 15 mm*mrad > >>
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> > > /gate/source/C12/setEllipseYPhiEmittance 15 mm*mrad >
</span><o:p></o:p></p>
<p class="MsoPlainText">> >> > > > >> > > #positive-> converging
<o:p></o:p></p>
<p class="MsoPlainText">> beam; negative diverging beam > >> > > <o:p>
</o:p></p>
<p class="MsoPlainText">> /gate/source/C12/setEllipseXThetaRotationNorm <o:p></o:p></p>
<p class="MsoPlainText">> positive <o:p></o:p></p>
<p class="MsoPlainText">> > >> > > /gate/source/C12/setEllipseYPhiRotationNorm
<o:p></o:p></p>
<p class="MsoPlainText">> positive <o:p></o:p></p>
<p class="MsoPlainText">> > >> > > <o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > Now, I want to use TPS Pencil Beam Source to
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> simulate > >> realistic > >> > > treatment
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> plan for carbon ion therapy. In > >> Source-properties.txt
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> file, > >> > > it contains 8 polynomial equations, each
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> equation being a > >> function of > >> > > the
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> energy at the nozzle entrance.</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText">> > >> > > <o:p></o:p></p>
<p class="MsoPlainText">> > >> > > #################TPS Pencil Beam >
<o:p></o:p></p>
<p class="MsoPlainText">> >> > > > >> <o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> Source-Source-properties########################################</span><span lang="FR">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> > >> > ></span><span lang="FR">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> > >> > > # Source properties > >> > >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> > >> > > # Nozzle exit to Isocenter distance >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> >> > > 1405.9 > >> > > # SMX to Isocenter
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> distance > >> > > 4000 > >> > > # SMY to
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> Isocenter distance > >> > > 4000 > >> >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> > > >> > > # ENERGY > >> > > # mean
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> energy > >> > > # polynomial order > >> >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > 1 > >> > > # polynomial parameters (highest to
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> lowest) > >> > > 1 > >> > > 0 >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> >> > > > >> > > # energy spread >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> >> > > # polynomial order > >> > > percent
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > 1 > >> > > # polynomial
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> parameters (highest to lowest) > >> > > 0.001 >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> >> > > 0 > >> > > > >> > > #
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> SPOT x y theta phi > >> > > # x > >> > >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> # polynomial order > >> > > 1 > >> > > #
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> polynomial parameters > >> > > 0 > >> >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > 3 > >> > > # Theta > >> > > #
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> polynomial order > >> > > 1 > >> > > #
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> polynomial parameters > >> > > 0 > >> >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > 0.004 > >> > > # y > >> > > #
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> polynomial order > >> > > 1 > >> > > #
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> polynomial parameters > >> > > 0 > >> >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > 3 > >> > > # Phi > >> > > #
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> polynomial order > >> > > 1 > >> > > #
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> polynomial parameters > >> > > 0 > >> >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > 0.004 > >> > > > >> > > # SPOT
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> emmittances > >> > > # x-theta emmittance > >>
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > > # polynomial order > >> > > 1 > >>
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > > # polynomial parameters > >> > > 0 >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> >> > > 0.015 > >> > > # y-phi emmittance
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > # polynomial order > >> > > 1
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> > >> > > # polynomial parameters > >> >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> > 0 > >> > > 0.015 > >> > > >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> >> > > #################TPS Pencil Beam > >>
</span><o:p></o:p></p>
<p class="MsoPlainText">> > > > >> <o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> Source-PlanDescriptionToGate########################################</span><span lang="FR">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> > >> > ></span><span lang="FR">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> > >> > > #TREATMENT-PLAN-DESCRIPTION > >>
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> > > #PlanName > >> > > IMPT</span><span lang="FR">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > #NumberOfFractions *** CURRENTLY</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> THIS VALUE IS</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> NOT USED</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > ***</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText">> > >> > > 1 <o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > ##FractionID *** CURRENTLY</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> THIS VALUE IS</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> NOT USED</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText">> > >> > > *** <o:p></o:p></p>
<p class="MsoPlainText">> > >> > > 1 <o:p></o:p></p>
<p class="MsoPlainText">> > >> > > ##NumberOfFields > >> > > 1
<o:p></o:p></p>
<p class="MsoPlainText">> > >> > > ###FieldsID > >> > > 1 >
<o:p></o:p></p>
<p class="MsoPlainText">> >> > > <o:p></o:p></p>
<p class="MsoPlainText">> > >> > > #TotalMetersetWeightOfAllFields ***
<o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> CURRENTLY THIS</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> VALUE IS</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > NOT USED ***</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText">> > >> > > 662421 <o:p></o:p></p>
<p class="MsoPlainText">> > >> > > <o:p></o:p></p>
<p class="MsoPlainText">> > >> > > #FIELD-DESCRIPTION > >> > >
<o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> ###FieldID > >> > > 1</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > ###FinalCumulativeMeterSetWeight ***</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> CURRENTLY THIS</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> VALUE IS NOT</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > USED ***</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText">> > >> > > 336732 <o:p></o:p></p>
<p class="MsoPlainText">> > >> > > ###GantryAngle (in degrees) > >> >
<o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> > 0</span><span lang="FR"> </span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> > >> > > ###PatientSupportAngle ***
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> CURRENTLY THIS</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> VALUE IS NOT</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > USED ***</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText">> > >> > > 0 <o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> > >> > > ###IsocenterPosition ***</span><span lang="FR">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> CURRENTLY THIS VALUE</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> IS NOT</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > USED ***</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText">> > >> > > 0 0 0 <o:p></o:p></p>
<p class="MsoPlainText">> > >> > > ###NumberOfControlPoints > >> >
<o:p></o:p></p>
<p class="MsoPlainText">> > 1 > >> > > > >> > > <o:p>
</o:p></p>
<p class="MsoPlainText"><span lang="FR">> #SPOTS-DESCRIPTION > >> > > ####ControlPointIndex >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> >> > > 0</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > ####SpotTunnedID *** CURRENTLY</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> THIS VALUE IS</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> NOT USED</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > ***</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText">> > >> > > 0 <o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > ####CumulativeMetersetWeight ***</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> CURRENTLY THIS</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> VALUE IS NOT</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > USED ***</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText">> > >> > > 0 <o:p></o:p></p>
<p class="MsoPlainText">> > >> > > ####Energy (MeV) > >> > >
<o:p></o:p></p>
<p class="MsoPlainText">> 2687.52 > >> > > ####NbOfScannedSpots > >>
<o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > > 1 > >> > > ####X Y Weight (spot position at
</span><o:p></o:p></p>
<p class="MsoPlainText">> isocenter in mm, with > >> weight in MU > >> >
<o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > (default) or number of ions "setSpotIntensityAsNbIons true") >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> >> > > 0 0 100 > >> > > > >> >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > I simulated the same energy beam in my > >>
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> PlanDescriptionToGate.txt file > >> > > and the spot
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> position is at isocenter.</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> However, I find that</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> the dose</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > distributions with these two sources in water
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> box were > >> different. I'm > >> > > puzzled
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> about the parameter settings in TPS Pencil Beam > >> Source
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> if I > >> > > want to make them consistent with those
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> in Pencil Beam > >> Source > >> > > settings.
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> How can I do?</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > ></span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > Best regards, > >> > > >
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> >> > > Hui Zhang > >> > > > >>
</span><o:p></o:p></p>
<p class="MsoPlainText">> > > ------------------------- > >> > >
<o:p></o:p></p>
<p class="MsoPlainText">> _______________________________________________ <o:p></o:p></p>
<p class="MsoPlainText">> > >> > > Gate-users mailing list > >> >
<o:p></o:p></p>
<p class="MsoPlainText">> > <a href="mailto:Gate-users@lists.opengatecollaboration.org">
<span style="color:windowtext;text-decoration:none">Gate-users@lists.opengatecollaboration.org</span></a>
<o:p></o:p></p>
<p class="MsoPlainText">> > >> > > <o:p></o:p></p>
<p class="MsoPlainText">> > >> <o:p></o:p></p>
<p class="MsoPlainText">> <a href="https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Flists">
<span style="color:windowtext;text-decoration:none">https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Flists</span></a>
<o:p></o:p></p>
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</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> 02%7C01%7Cloic.grevillot%40medaustron.at%7C7689c7e6677d4cbf737908d7fbd</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> de75d%7Cadb749e06dfd4f6fbea8cd9f8e0c9b89%7C0%7C0%7C637254802831519922&</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> amp;sdata=oItkB5U0cTnuuyVWvjCg0MF%2FRr%2B%2FZzCJ7Bn5BdcXKhs%3D&res</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> erved=0</span><span lang="EN-US"> </span>
<o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >></span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >></span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> ------------------------------ > >> Zhang
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> HuiUniversity of Chinese Academy of Sciences > >> Institute
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> of Modern Physics > >> </span>
<o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> <</span><a href="mailto:/zhanghui@impcas.ac.cn"><span lang="EN-US" style="color:windowtext;text-decoration:none">/zhanghui@impcas.ac.cn</span></a><span lang="EN-US">><</span><a href="mailto:/jakub.baran@ifj.edu.pl"><span lang="EN-US" style="color:windowtext;text-decoration:none">/jakub.baran@ifj.edu.pl</span></a><span lang="EN-US">></span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> _______________________________________________</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> Gate-users mailing list</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText">> > >> <a href="mailto:Gate-users@lists.opengatecollaboration.org">
<span style="color:windowtext;text-decoration:none">Gate-users@lists.opengatecollaboration.org</span></a>
<o:p></o:p></p>
<p class="MsoPlainText">> > >> <o:p></o:p></p>
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</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> de75d%7Cadb749e06dfd4f6fbea8cd9f8e0c9b89%7C0%7C0%7C637254802831519922&</span><span lang="EN-US">
</span><o:p></o:p></p>
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<p class="MsoPlainText"><span lang="EN-US">> erved=0</span><span lang="EN-US"> </span>
<o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> </span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> </span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> ------------------------------</span><span lang="EN-US">
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> Zhang HuiUniversity of Chinese Academy of Sciences Institute of Modern
</span><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> Physics <</span><a href="mailto:/zhanghui@impcas.ac.cn"><span lang="EN-US" style="color:windowtext;text-decoration:none">/zhanghui@impcas.ac.cn</span></a><span lang="EN-US">><</span><a href="mailto:/jbaran@ifj.edu.pl"><span lang="EN-US" style="color:windowtext;text-decoration:none">/jbaran@ifj.edu.pl</span></a><span lang="EN-US">></span><span lang="EN-US">
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<span class="spneditorsign">Zhang Hui <o:p></o:p></span></p>
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University of Chinese Academy of Sciences <o:p></o:p></p>
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Institute of Modern Physics<o:p></o:p></p>
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