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<p class="MsoPlainText"><span lang="EN-US">Dear both,<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">I was having a short look at your discussion and I do not exactly get your issue, but I would like to provide a few hints if it may help:<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText" style="margin-left:36.0pt;text-indent:-18.0pt;mso-list:l0 level1 lfo2">
<![if !supportLists]><span lang="EN-US"><span style="mso-list:Ignore">1.<span style="font:7.0pt "Times New Roman"">
</span></span></span><![endif]><span lang="EN-US">In the TPS source, one can set the following option to true or false, depending if you want the beam to be diverging or converging:<o:p></o:p></span></p>
<p class="MsoPlainText" style="margin-left:72.0pt;text-indent:-18.0pt;mso-list:l0 level2 lfo2">
<![if !supportLists]><span lang="EN-US" style="font-family:"Courier New""><span style="mso-list:Ignore">o<span style="font:7.0pt "Times New Roman"">
</span></span></span><![endif]><span lang="EN-US">/gate/source/PBS/setBeamConvergence true (or false)<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText" style="margin-left:72.0pt"><span style="mso-fareast-language:DE"><img width="868" height="203" id="Picture_x0020_1" src="cid:image001.jpg@01D62E8D.3E6DFBB0"></span><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoListParagraph"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText" style="margin-left:72.0pt;text-indent:-18.0pt;mso-list:l0 level2 lfo2">
<![if !supportLists]><span lang="EN-US" style="font-family:"Courier New""><span style="mso-list:Ignore">o<span style="font:7.0pt "Times New Roman"">
</span></span></span><![endif]><span lang="EN-US">If you use this option, I do not understand why you would need to change the source code or recompile? Just use the setBeamConvergence option.<o:p></o:p></span></p>
<p class="MsoListParagraph"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText" style="margin-left:72.0pt;text-indent:-18.0pt;mso-list:l0 level2 lfo2">
<![if !supportLists]><span lang="EN-US" style="font-family:"Courier New""><span style="mso-list:Ignore">o<span style="font:7.0pt "Times New Roman"">
</span></span></span><![endif]><span lang="EN-US">For a more detailed understanding of the TPS source, you can run the validation tests provided in the
<a href="https://github.com/OpenGATE/GateContrib/tree/master/GATE-RTion/TPSPencilBeamSource">
GATE-RTion folder</a> of the GitContrib repository of GATE<o:p></o:p></span></p>
<p class="MsoListParagraph"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText" style="margin-left:36.0pt;text-indent:-18.0pt;mso-list:l0 level1 lfo2">
<![if !supportLists]><span lang="EN-US"><span style="mso-list:Ignore">2.<span style="font:7.0pt "Times New Roman"">
</span></span></span><![endif]><span lang="EN-US">If despite changing this option, the beam is always diverging, it may simply be that you define your beam properties at the waist position… then in that case the beam can only diverge.<o:p></o:p></span></p>
<p class="MsoPlainText" style="margin-left:72.0pt;text-indent:-18.0pt;mso-list:l0 level2 lfo2">
<![if !supportLists]><span lang="EN-US" style="font-family:"Courier New""><span style="mso-list:Ignore">o<span style="font:7.0pt "Times New Roman"">
</span></span></span><![endif]><span style="mso-fareast-language:DE"><img border="0" width="562" height="322" id="Picture_x0020_2" src="cid:image004.png@01D62E8C.F859EB70" alt="cid:image004.png@01D62E8C.F859EB70"></span><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">Hope this helps?<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><span lang="FR" style="mso-fareast-language:DE">Best,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="FR" style="mso-fareast-language:DE">Loïc<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoPlainText"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US" style="mso-fareast-language:DE">-----Original Message-----<br>
From: Gate-users [mailto:gate-users-bounces@lists.opengatecollaboration.org] On Behalf Of jbaran<br>
Sent: Dienstag, 19. Mai 2020 12:17<br>
To: </span><span style="font-family:"Microsoft JhengHei",sans-serif;mso-fareast-language:DE">张晖</span><span lang="EN-US" style="mso-fareast-language:DE"> <zhanghui@impcas.ac.cn><br>
Cc: gate-users@lists.opengatecollaboration.org<br>
Subject: Re: [Gate-users] TPS Pencil Beam Source setting</span><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">Dear Hui Zhang,<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">maybe this is trivial (I am sorry if I write obvious things), but I want to clarify it. Whenever you change the source code of GATE you have to recompile it. Assuming you have GATE ver.8.2, you have to go to the directory
gate_v8.2-build<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">(</span><a href="https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fopengate.readthedocs.io%2Fen%2Flatest%2Fcompilation_instructions.html%23compilation-instructions-label&data=02%7C01%7Cloic.grevillot%40medaustron.at%7C7689c7e6677d4cbf737908d7fbdde75d%7Cadb749e06dfd4f6fbea8cd9f8e0c9b89%7C0%7C0%7C637254802831509937&sdata=phmMjoqNL9dXmsyN0zzMkFvqzDJjZ8NHMK%2BT2I5J98Y%3D&reserved=0"><span lang="EN-US" style="color:windowtext;text-decoration:none">https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fopengate.readthedocs.io%2Fen%2Flatest%2Fcompilation_instructions.html%23compilation-instructions-label&data=02%7C01%7Cloic.grevillot%40medaustron.at%7C7689c7e6677d4cbf737908d7fbdde75d%7Cadb749e06dfd4f6fbea8cd9f8e0c9b89%7C0%7C0%7C637254802831509937&sdata=phmMjoqNL9dXmsyN0zzMkFvqzDJjZ8NHMK%2BT2I5J98Y%3D&reserved=0</span></a><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">this is for GATE 9.0 but the procedure is very similar) and run again<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">commands:<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">make -jN (N is the number of processor(s) in your PC) make install<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">you don't have to build it from the scratch and run commands like ccmake and others, just two commands will be enough (I belive only 'make install' would be sufficient but run both just to be sure). Due to the fact
you changed just one file the compilation will be very fast not as it was in case of first compilation.<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">If you did that already, could you please provide example 2D dose distribution images?<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">Jakub<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">On 2020-05-19 11:54, </span><span lang="EN-US" style="font-family:"Microsoft JhengHei",sans-serif">张晖</span><span lang="EN-US"> wrote:<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> Dear Jakub,<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> The attachment is the percentage depth dose distribution in water box.<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> I just changed the default values on true in
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> GateSourceTPSPencilBeam.cc file,and run my code again. Did you mean
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> reinstall the Gate 8.2?<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> <o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> <o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > -----</span><span lang="EN-US">原始</span><span lang="EN-US" style="font-family:"Microsoft JhengHei",sans-serif">邮件</span><span lang="EN-US">-----<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > </span><span lang="EN-US" style="font-family:"Microsoft JhengHei",sans-serif">发件人</span><span lang="EN-US">: jbaran <</span><a href="mailto:jbaran@ifj.edu.pl"><span lang="EN-US" style="color:windowtext;text-decoration:none">jbaran@ifj.edu.pl</span></a><span lang="EN-US">><o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > </span><span lang="EN-US" style="font-family:"Microsoft JhengHei",sans-serif">发送时间</span><span lang="EN-US">: 2020-05-19 17:29:00 (</span><span lang="EN-US">星期二</span><span lang="EN-US">)<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > </span><span lang="EN-US">收件人</span><span lang="EN-US">: "</span><span lang="EN-US" style="font-family:"Microsoft JhengHei",sans-serif">张晖</span><span lang="EN-US">" <</span><a href="mailto:zhanghui@impcas.ac.cn"><span lang="EN-US" style="color:windowtext;text-decoration:none">zhanghui@impcas.ac.cn</span></a><span lang="EN-US">>
> </span><span lang="EN-US">抄送</span><span lang="EN-US">: <o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> </span><a href="mailto:gate-users@lists.opengatecollaboration.org"><span lang="EN-US" style="color:windowtext;text-decoration:none">gate-users@lists.opengatecollaboration.org</span></a><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > </span><span lang="EN-US">主</span><span lang="EN-US" style="font-family:"Microsoft JhengHei",sans-serif">题</span><span lang="EN-US">: Re: [Gate-users] TPS Pencil Beam Source setting > >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> Dear Hui Zhang, > > just to check, did you recompile the GATE
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> once again? Could you please > explain if the differences are in
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> spatial distribution or the spatial > distribution of the doses is
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> consistent and the differences are in the > values?<o:p></o:p></span></p>
<p class="MsoPlainText">> ><o:p></o:p></p>
<p class="MsoPlainText">> > Jakub<o:p></o:p></p>
<p class="MsoPlainText">> ><o:p></o:p></p>
<p class="MsoPlainText">> ><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > On 2020-05-19 11:13, </span><span lang="EN-US" style="font-family:"Microsoft JhengHei",sans-serif">张晖</span><span lang="EN-US"> wrote:<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> Dear Jakub<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> I used Gate 8.2 for simulation.In
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> GateSourceTPSPencilBeam.cc, the beam > >> is divergent by
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> default, and I have changed the default values on > >> true.
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> However, it dosen't work in my case.<o:p></o:p></span></p>
<p class="MsoPlainText">> > >> #=====================================================<o:p></o:p></p>
<p class="MsoPlainText">> > >> # BEAMS<o:p></o:p></p>
<p class="MsoPlainText">> > >> #=====================================================<o:p></o:p></p>
<p class="MsoPlainText">> > >> /gate/source/addSource PBS TPSPencilBeam > >>
<o:p></o:p></p>
<p class="MsoPlainText">> /gate/source/PBS/setParticleType GenericIon > >>
<o:p></o:p></p>
<p class="MsoPlainText">> /gate/source/PBS/setIonProperties 6 12 6 0 > >>
<o:p></o:p></p>
<p class="MsoPlainText">> /gate/source/PBS/setTestFlag false > >> <o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> /gate/source/PBS/setPlan data/PlanDescriptionToGATE.txt > >>
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> #/gate/source/PBS/setNotAllowedFieldID 1 > >>
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> #/gate/source/PBS/setNotAllowedFieldID 2 > >>
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> /gate/source/PBS/setFlatGenerationFlag false > >>
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> /gate/source/PBS/setSpotIntensityAsNbIons true > >>
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> /gate/source/PBS/setSortedSpotGenerationFlag false > >>
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> /gate/source/PBS/setSigmaEnergyInMeVFlag false > >>
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> /gate/source/PBS/setSourceDescriptionFile<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> data/Source-Properties.txt<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> /gate/source/PBS/setBeamConvergence true > >>
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> This is my part of code in main.mac file.<o:p></o:p></span></p>
<p class="MsoPlainText">> > >><o:p></o:p></p>
<p class="MsoPlainText">> > >><o:p></o:p></p>
<p class="MsoPlainText">> > >> > -----<span lang="EN-US">原始</span><span lang="EN-US" style="font-family:"Microsoft JhengHei",sans-serif">邮件</span>-----<o:p></o:p></p>
<p class="MsoPlainText">> > >> > <span lang="EN-US" style="font-family:"Microsoft JhengHei",sans-serif">
发件人</span>: jbaran <<a href="mailto:jakub.baran@ifj.edu.pl"><span style="color:windowtext;text-decoration:none">jakub.baran@ifj.edu.pl</span></a>> > >>
<o:p></o:p></p>
<p class="MsoPlainText">> > <span lang="EN-US" style="font-family:"Microsoft JhengHei",sans-serif">
发送时间</span>: 2020-05-19 16:34:13 (<span lang="EN-US">星期二</span>)<o:p></o:p></p>
<p class="MsoPlainText">> > >> > <span lang="EN-US">收件人</span>: "<span lang="EN-US" style="font-family:"Microsoft JhengHei",sans-serif">张晖</span>" <<a href="mailto:zhanghui@impcas.ac.cn"><span style="color:windowtext;text-decoration:none">zhanghui@impcas.ac.cn</span></a>>
> >> <o:p></o:p></p>
<p class="MsoPlainText">> > <span lang="EN-US">抄送</span>: <a href="mailto:gate-users@lists.opengatecollaboration.org">
<span style="color:windowtext;text-decoration:none">gate-users@lists.opengatecollaboration.org</span></a><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > </span><span lang="EN-US">主</span><span lang="EN-US" style="font-family:"Microsoft JhengHei",sans-serif">题</span><span lang="EN-US">: Re: [Gate-users] TPS Pencil Beam Source setting
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > >> > Dear Hui Zhang, > >>
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > > >> > I am not sure which version of GATE you are
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> using but from my > >> experience > >> > it seems
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> that when you are using Pencil Beam source you are able > >>
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> to set > >> > if your beam is divergent or convergent and
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> you are using > >> convergent > >> > beam from
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> what I see in your souce code. In case of TPS source > >> the
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> beam > >> > is divergent by default > >> >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >><o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> (</span><a href="https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgit"><span lang="EN-US" style="color:windowtext;text-decoration:none">https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgit</span></a><span lang="EN-US"><o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> hub.com%2FOpenGATE%2FGate%2Fblob%2Fdevelop%2Fsource%2Fphysics%2Fsrc%2F<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> GateSourceTPSPencilBeam.cc&data=02%7C01%7Cloic.grevillot%40medaust<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> ron.at%7C7689c7e6677d4cbf737908d7fbdde75d%7Cadb749e06dfd4f6fbea8cd9f8e<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> 0c9b89%7C0%7C0%7C637254802831519922&sdata=YQQt8kRb6F9Xf%2BYiVkouea<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> 6hf%2BUO0ErAb6eZ0%2FWswZM%3D&reserved=0<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > - lines: 60 and 61), for sure in GATE 8.2 and 9.0
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> and I pressume > >> for all > >> > of GATE
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> versions is the case but you have to check it with your > >>
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> version.<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > In my case I just change the default values on true<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> (lines: 60<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> and 61)<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > and recompile GATE once again. Please let us know
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> if it works in > >> your > >> > case.<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> ><o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > All the best,<o:p></o:p></span></p>
<p class="MsoPlainText">> > >> > Jakub<o:p></o:p></p>
<p class="MsoPlainText">> > >> ><o:p></o:p></p>
<p class="MsoPlainText">> > >> ><o:p></o:p></p>
<p class="MsoPlainText">> > >> ><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > On 2020-05-19 10:19,
</span><span lang="EN-US" style="font-family:"Microsoft JhengHei",sans-serif">张晖</span><span lang="EN-US"> wrote:<o:p></o:p></span></p>
<p class="MsoPlainText">> > >> > > Dear Gate Users:<o:p></o:p></p>
<p class="MsoPlainText">> > >> > ><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > I previously used Pencil Beam Source to
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> simulate > >> single-energy pencil > >> > >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> beam for carbon-ion therapy. The features of the pencil beam >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> >> source > >> > > such as spot size, divergence
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> and beam emittance were > >> defined as > >> >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > follows: 3 mm spot size in both x and y directions, 4 mrad >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> >> divergence > >> > > and 15 mm·mrad beam
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> emittance. The energy spread was set to > >> 0.1% of >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> >> > > the respective energy. Except for dipole scanning
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> magnets,vacuum pipe > >> > > and window,
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> main and sub-dose monitors, a multi-strip > >> ionization
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > chamber (IC) and a mini ridge filter were
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> modeled in my MC > >> > > simulations. The source
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> position was located before the > >> vacuum window >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> >> > > and a water box was located at isocenter.<o:p></o:p></span></p>
<p class="MsoPlainText">> > >> > ><o:p></o:p></p>
<p class="MsoPlainText">> > >> > > #################Pencil Beam > >>
<o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> > > Source########################################<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="FR">> > >> > ><o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="FR">> > >> > > # SOURCE PBS<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="FR">> > >> > > /gate/source/addSource C12 PencilBeam >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="FR">> >> > > > >> > > #particle type >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="FR">> >> > > /gate/source/C12/setParticleType GenericIon >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="FR">> >> > > /gate/source/C12/setIonProperties 6 12 6 0 >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="FR">> >> > > > >> > > #energy spectrum >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> >> > > /gate/source/C12/setEnergy 2687.52 MeV >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> >> > > /gate/source/C12/setSigmaEnergy 2.68752 MeV >
<o:p></o:p></span></p>
<p class="MsoPlainText">> >> > > > >> > > #position > >>
<o:p></o:p></p>
<p class="MsoPlainText">> > > /gate/source/C12/setPosition 0 0 -1.4059 m > >>
<o:p></o:p></p>
<p class="MsoPlainText">> > > > >> > > # spot size > >> > >
<o:p></o:p></p>
<p class="MsoPlainText">> /gate/source/C12/setSigmaX 3 mm > >> > >
<o:p></o:p></p>
<p class="MsoPlainText">> /gate/source/C12/setSigmaY 3 mm > >> > > > >>
<o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> > > #divergence > >> > >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> /gate/source/C12/setSigmaTheta 4 mrad > >> > >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="FR">> /gate/source/C12/setSigmaPhi 4 mrad > >> > > >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="FR">> >> > > #emittance > >> > >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="FR">> /gate/source/C12/setEllipseXThetaEmittance 15 mm*mrad > >>
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="FR">> > > /gate/source/C12/setEllipseYPhiEmittance 15 mm*mrad >
<o:p></o:p></span></p>
<p class="MsoPlainText">> >> > > > >> > > #positive-> converging
<o:p></o:p></p>
<p class="MsoPlainText">> beam; negative diverging beam > >> > > <o:p>
</o:p></p>
<p class="MsoPlainText">> /gate/source/C12/setEllipseXThetaRotationNorm<o:p></o:p></p>
<p class="MsoPlainText">> positive<o:p></o:p></p>
<p class="MsoPlainText">> > >> > > /gate/source/C12/setEllipseYPhiRotationNorm<o:p></o:p></p>
<p class="MsoPlainText">> positive<o:p></o:p></p>
<p class="MsoPlainText">> > >> > ><o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > Now, I want to use TPS Pencil Beam Source to
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> simulate > >> realistic > >> > > treatment
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> plan for carbon ion therapy. In > >> Source-properties.txt
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> file, > >> > > it contains 8 polynomial equations, each
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> equation being a > >> function of > >> > > the
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> energy at the nozzle entrance.<o:p></o:p></span></p>
<p class="MsoPlainText">> > >> > ><o:p></o:p></p>
<p class="MsoPlainText">> > >> > > #################TPS Pencil Beam >
<o:p></o:p></p>
<p class="MsoPlainText">> >> > > > >> <o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> Source-Source-properties########################################<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="FR">> > >> > ><o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="FR">> > >> > > # Source properties > >> > >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="FR">> > >> > > # Nozzle exit to Isocenter distance >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="FR">> >> > > 1405.9 > >> > > # SMX to Isocenter
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> distance > >> > > 4000 > >> > > # SMY to
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="FR">> Isocenter distance > >> > > 4000 > >> >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="FR">> > > >> > > # ENERGY > >> > > # mean
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="FR">> energy > >> > > # polynomial order > >> >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > 1 > >> > > # polynomial parameters (highest to
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> lowest) > >> > > 1 > >> > > 0 >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> >> > > > >> > > # energy spread >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> >> > > # polynomial order > >> > > percent
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > 1 > >> > > # polynomial
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> parameters (highest to lowest) > >> > > 0.001 >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> >> > > 0 > >> > > > >> > > #
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> SPOT x y theta phi > >> > > # x > >> > >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> # polynomial order > >> > > 1 > >> > > #
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> polynomial parameters > >> > > 0 > >> >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > 3 > >> > > # Theta > >> > > #
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> polynomial order > >> > > 1 > >> > > #
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> polynomial parameters > >> > > 0 > >> >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > 0.004 > >> > > # y > >> > > #
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> polynomial order > >> > > 1 > >> > > #
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> polynomial parameters > >> > > 0 > >> >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > 3 > >> > > # Phi > >> > > #
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> polynomial order > >> > > 1 > >> > > #
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> polynomial parameters > >> > > 0 > >> >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > 0.004 > >> > > > >> > > # SPOT
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> emmittances > >> > > # x-theta emmittance > >>
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > > # polynomial order > >> > > 1 > >>
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > > # polynomial parameters > >> > > 0 >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> >> > > 0.015 > >> > > # y-phi emmittance
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > # polynomial order > >> > > 1
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="FR">> > >> > > # polynomial parameters > >> >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="FR">> > 0 > >> > > 0.015 > >> > > >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="FR">> >> > > #################TPS Pencil Beam > >>
<o:p></o:p></span></p>
<p class="MsoPlainText">> > > > >> <o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> Source-PlanDescriptionToGate########################################<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="FR">> > >> > ><o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="FR">> > >> > > #TREATMENT-PLAN-DESCRIPTION > >>
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="FR">> > > #PlanName > >> > > IMPT<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > #NumberOfFractions *** CURRENTLY<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> THIS VALUE IS<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> NOT USED<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > ***<o:p></o:p></span></p>
<p class="MsoPlainText">> > >> > > 1<o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > ##FractionID *** CURRENTLY<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> THIS VALUE IS<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> NOT USED<o:p></o:p></span></p>
<p class="MsoPlainText">> > >> > > ***<o:p></o:p></p>
<p class="MsoPlainText">> > >> > > 1<o:p></o:p></p>
<p class="MsoPlainText">> > >> > > ##NumberOfFields > >> > > 1
<o:p></o:p></p>
<p class="MsoPlainText">> > >> > > ###FieldsID > >> > > 1 >
<o:p></o:p></p>
<p class="MsoPlainText">> >> > ><o:p></o:p></p>
<p class="MsoPlainText">> > >> > > #TotalMetersetWeightOfAllFields ***<o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> CURRENTLY THIS<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> VALUE IS<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > NOT USED ***<o:p></o:p></span></p>
<p class="MsoPlainText">> > >> > > 662421<o:p></o:p></p>
<p class="MsoPlainText">> > >> > ><o:p></o:p></p>
<p class="MsoPlainText">> > >> > > #FIELD-DESCRIPTION > >> > >
<o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> ###FieldID > >> > > 1<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > ###FinalCumulativeMeterSetWeight ***<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> CURRENTLY THIS<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> VALUE IS NOT<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > USED ***<o:p></o:p></span></p>
<p class="MsoPlainText">> > >> > > 336732<o:p></o:p></p>
<p class="MsoPlainText">> > >> > > ###GantryAngle (in degrees) > >> >
<o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> > 0<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="FR">> > >> > > ###PatientSupportAngle ***
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> CURRENTLY THIS<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> VALUE IS NOT<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > USED ***<o:p></o:p></span></p>
<p class="MsoPlainText">> > >> > > 0<o:p></o:p></p>
<p class="MsoPlainText"><span lang="FR">> > >> > > ###IsocenterPosition ***<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> CURRENTLY THIS VALUE<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> IS NOT<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > USED ***<o:p></o:p></span></p>
<p class="MsoPlainText">> > >> > > 0 0 0<o:p></o:p></p>
<p class="MsoPlainText">> > >> > > ###NumberOfControlPoints > >> >
<o:p></o:p></p>
<p class="MsoPlainText">> > 1 > >> > > > >> > > <o:p>
</o:p></p>
<p class="MsoPlainText"><span lang="FR">> #SPOTS-DESCRIPTION > >> > > ####ControlPointIndex >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> >> > > 0<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > ####SpotTunnedID *** CURRENTLY<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> THIS VALUE IS<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> NOT USED<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > ***<o:p></o:p></span></p>
<p class="MsoPlainText">> > >> > > 0<o:p></o:p></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > ####CumulativeMetersetWeight ***<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> CURRENTLY THIS<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> VALUE IS NOT<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > USED ***<o:p></o:p></span></p>
<p class="MsoPlainText">> > >> > > 0<o:p></o:p></p>
<p class="MsoPlainText">> > >> > > ####Energy (MeV) > >> > >
<o:p></o:p></p>
<p class="MsoPlainText">> 2687.52 > >> > > ####NbOfScannedSpots > >>
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<p class="MsoPlainText"><span lang="EN-US">> > > 1 > >> > > ####X Y Weight (spot position at
<o:p></o:p></span></p>
<p class="MsoPlainText">> isocenter in mm, with > >> weight in MU > >> >
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<p class="MsoPlainText"><span lang="EN-US">> > (default) or number of ions "setSpotIntensityAsNbIons true") >
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<p class="MsoPlainText"><span lang="EN-US">> >> > > 0 0 100 > >> > > > >> >
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<p class="MsoPlainText"><span lang="EN-US">> > I simulated the same energy beam in my > >>
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<p class="MsoPlainText"><span lang="EN-US">> PlanDescriptionToGate.txt file > >> > > and the spot
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> position is at isocenter.<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> However, I find that<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> the dose<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > distributions with these two sources in water
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> box were > >> different. I'm > >> > > puzzled
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> about the parameter settings in TPS Pencil Beam > >> Source
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> if I > >> > > want to make them consistent with those
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> in Pencil Beam > >> Source > >> > > settings.
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> How can I do?<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > ><o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> > > Best regards, > >> > > >
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> >> > > Hui Zhang > >> > > > >>
<o:p></o:p></span></p>
<p class="MsoPlainText">> > > ------------------------- > >> > >
<o:p></o:p></p>
<p class="MsoPlainText">> _______________________________________________<o:p></o:p></p>
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<p class="MsoPlainText"><span lang="EN-US">> > >><o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >><o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> ------------------------------ > >> Zhang
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> HuiUniversity of Chinese Academy of Sciences > >> Institute
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> of Modern Physics > >> <o:p>
</o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> <</span><a href="mailto:/zhanghui@impcas.ac.cn"><span lang="EN-US" style="color:windowtext;text-decoration:none">/zhanghui@impcas.ac.cn</span></a><span lang="EN-US">><</span><a href="mailto:/jakub.baran@ifj.edu.pl"><span lang="EN-US" style="color:windowtext;text-decoration:none">/jakub.baran@ifj.edu.pl</span></a><span lang="EN-US">><o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> > >> _______________________________________________<o:p></o:p></span></p>
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<p class="MsoPlainText"><span lang="EN-US">> ------------------------------<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> Zhang HuiUniversity of Chinese Academy of Sciences Institute of Modern
<o:p></o:p></span></p>
<p class="MsoPlainText"><span lang="EN-US">> Physics <</span><a href="mailto:/zhanghui@impcas.ac.cn"><span lang="EN-US" style="color:windowtext;text-decoration:none">/zhanghui@impcas.ac.cn</span></a><span lang="EN-US">><</span><a href="mailto:/jbaran@ifj.edu.pl"><span lang="EN-US" style="color:windowtext;text-decoration:none">/jbaran@ifj.edu.pl</span></a><span lang="EN-US">><o:p></o:p></span></p>
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