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Dear Simon </div>
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Thank you very much for your prompt response and a very good idea. </div>
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When I installed the Gate in the GateContrib-master folder there were different examples for dosimetry, imaging...., It was a ready written program and there was no Readme.txt file inside. </div>
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I think you right but I don't know where I find this file from and install in the related path for Thermal.</div>
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Could you please guide me in this regard.</div>
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I would be so grateful if you provide me with your guidance. </div>
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Best </div>
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GateContrib-master<br>
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<span style="margin:0px; font-size:11pt; color:rgb(117,123,128); font-family:"Times New Roman",Times,serif"><i>Somayeh Asadi (PhD)</i></span></div>
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<span style="margin:0px; font-size:10pt; color:rgb(117,123,128); font-family:"Times New Roman",Times,serif">somayeh.asadi@polimi.</span><span style="margin:0px; font-size:10pt; color:rgb(117,123,128)">it</span></div>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>From:</b> Simon Rit <simon.rit@creatis.insa-lyon.fr><br>
<b>Sent:</b> Tuesday, April 21, 2020 3:32 PM<br>
<b>To:</b> Somayeh Asadi <somayeh.asadi@polimi.it><br>
<b>Cc:</b> gate-users@lists.opengatecollaboration.org <gate-users@lists.opengatecollaboration.org><br>
<b>Subject:</b> Re: [Gate-users] Question about the Thermal Actor and ITK</font>
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<div>Hi,</div>
<div>Have you installed git-lfs first (see <a href="https://github.com/OpenGATE/GateContrib/blob/master/readme.md">
readme.md</a>)? Because it looks like it cannot read the file and if <span style="color:rgb(50,49,48); font-size:14.6667px; background-color:rgb(255,255,255); display:inline">
<span style="background-color:rgb(255,255,255); display:inline"><span style="background-color:rgb(255,255,255); display:inline"><span style="background-color:rgb(255,255,255); display:inline">output/Mobydose-AbsorptionMap.mhd is there, maybe
<span style="color:rgb(50,49,48); font-size:14.6667px; background-color:rgb(255,255,255); display:inline">
<span style="background-color:rgb(255,255,255); display:inline"><span style="background-color:rgb(255,255,255); display:inline"><span style="background-color:rgb(255,255,255); display:inline">output/Mobydose-AbsorptionMap.raw isn't because you have not installed
git-lfs.</span></span></span></span></span></span></span></span></div>
<div><span style="color:rgb(50,49,48); font-size:14.6667px; background-color:rgb(255,255,255); display:inline"><span style="background-color:rgb(255,255,255); display:inline"><span style="background-color:rgb(255,255,255); display:inline"><span style="background-color:rgb(255,255,255); display:inline"><span style="color:rgb(50,49,48); font-size:14.6667px; background-color:rgb(255,255,255); display:inline"><span style="background-color:rgb(255,255,255); display:inline"><span style="background-color:rgb(255,255,255); display:inline"><span style="background-color:rgb(255,255,255); display:inline">Simon<br>
</span></span></span></span></span></span></span></span></div>
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<div dir="ltr" class="x_gmail_attr">On Tue, Apr 21, 2020 at 3:25 PM Somayeh Asadi <<a href="mailto:somayeh.asadi@polimi.it">somayeh.asadi@polimi.it</a>> wrote:<br>
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<b><span style="color:rgb(50,49,48); font-size:14.6667px; background-color:rgb(255,255,255); display:inline">Dear Gate User</span><br>
</b></div>
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</div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<span style="color:rgb(50,49,48); font-size:14.6667px; background-color:rgb(255,255,255); display:inline"><span style="background-color:rgb(255,255,255); display:inline"><b>For the ready program related to thermal therapy with the name of thermaltherapy.mac
in the folder of <span style="background-color:rgb(255,255,255); display:inline">
Imaging/Thermal in the subfolder of GateContrib-master, there is an error that seems to be related to ITK.</span></b></span></span></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<span style="color:rgb(50,49,48); font-size:14.6667px; background-color:rgb(255,255,255); display:inline"><span style="background-color:rgb(255,255,255); display:inline"><span style="background-color:rgb(255,255,255); display:inline"><b>the error is:</b></span></span></span></div>
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<span>terminate called after throwing an instance of 'itk::ImageFileReaderException'</span><br>
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<span style="color:rgb(50,49,48); font-size:14.6667px; background-color:rgb(255,255,255); display:inline"><span style="background-color:rgb(255,255,255); display:inline"><span style="background-color:rgb(255,255,255); display:inline"><span style="background-color:rgb(255,255,255); display:inline">
what(): /home/BuildFiles/ITK/InsightToolkit-5.0.0-Source/Modules/IO/ImageBase/include/itkImageFileReader.hxx:136:</span><br style="background-color:rgb(255,255,255)">
<span style="background-color:rgb(255,255,255); display:inline"> Could not create IO object for reading file output/Mobydose-AbsorptionMap.mhd</span><br style="background-color:rgb(255,255,255)">
<span style="background-color:rgb(255,255,255); display:inline"> Tried to create one of the following:</span><br style="background-color:rgb(255,255,255)">
<span style="background-color:rgb(255,255,255); display:inline"> GDCMImageIO</span><br style="background-color:rgb(255,255,255)">
<span style="background-color:rgb(255,255,255); display:inline"> You probably failed to set a file suffix, or</span><br style="background-color:rgb(255,255,255)">
<span style="background-color:rgb(255,255,255); display:inline"> set the suffix to an unsupported type.</span><br style="background-color:rgb(255,255,255)">
<span style="background-color:rgb(255,255,255); display:inline">Aborted (core dumped)</span><br>
</span></span></span></div>
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<span style="color:rgb(50,49,48); font-size:14.6667px; background-color:rgb(255,255,255); display:inline"><span style="background-color:rgb(255,255,255); display:inline"><br>
</span></span></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<b>I have downloaded and tried the ITK both the versions of 5.0.1 and 14.2, but after compiling the Gate with them I get the error. </b></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<b>For downloading the ITK, I use this link:</b></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<b><a href="https://itk.org/download/" target="_blank">https://itk.org/download/</a><br>
</b></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<b>I have recently check it with the ITK version 4.13.2 but I couldn't download all the related files.</b></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<b>Has any person had the same problem and experience with the thermal actor?</b></div>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<b>Has any person used the ITK version 5 and work with the thermal actor in which he/she didn't get any error?</b></div>
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<b> </b></div>
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<b>Thank you very much for your time and any suggestion. </b></div>
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<span style="margin:0px; font-size:11pt; color:rgb(117,123,128); font-family:"Times New Roman",Times,serif"><i>Somayeh Asadi (PhD)</i></span></div>
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<i style="color:rgb(117,123,128); font-family:"Times New Roman",Times,serif; font-size:11pt; font-variant-ligatures:inherit; font-variant-caps:inherit; font-weight:inherit">Politecnico di Milano, Italy</i></div>
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<span style="color:rgb(117,123,128); font-family:"Times New Roman",Times,serif; font-size:9pt">Via Giuseppe La Masa,1</span><br>
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<div><span style="color:rgb(117,123,128); font-size:9pt; font-family:"Times New Roman",Times,serif">20156 - Milano - Italy</span><br>
<span style="color:rgb(117,123,128); font-size:9pt; font-family:"Times New Roman",Times,serif">phone: +39 0223998572</span><br>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<div style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; text-align:start; background-color:rgb(255,255,255)">
<span style="margin:0px; font-size:10pt"></span><span style="margin:0px; font-size:11pt"></span><span style="margin:0px; color:rgb(117,123,128)"></span></div>
<div style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; text-align:start; background-color:rgb(255,255,255)">
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<p style="margin-top:0px; margin-bottom:0px; font-family:Calibri,Helvetica,sans-serif,Helvetica,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; text-align:start; background-color:rgb(255,255,255)">
<span style="margin:0px; font-size:11pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:11pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:11pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:11pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; color:rgb(117,123,128)"></span><span style="margin:0px; font-size:11pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:11pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:10pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:11pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; color:rgb(117,123,128)"></span><span style="margin:0px; font-size:11pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:10pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:10pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:11pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:10pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span></p>
<div style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; text-align:start; background-color:rgb(255,255,255)">
<span style="margin:0px; font-size:10pt; color:rgb(117,123,128); font-family:"Times New Roman",Times,serif">somayeh.asadi@polimi.</span><span style="margin:0px; font-size:10pt; color:rgb(117,123,128)">it</span></div>
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