<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=windows-1251">
<style type="text/css" style="display:none;"> P {margin-top:0;margin-bottom:0;} </style>
</head>
<body dir="ltr">
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
Dear David</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
Thank you very much for your explanation. I should say that an empty folder with the name of output was created and defined in the same path where the program is saved. </div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
However, I changed the path written in the program and delete the output, so it is expected that output is created in the same folder where the program is saved. But there is still nothing. Statistic. txt is not created.</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
Another point is that, even if you make a mistake to define a correct path for output the program should run up to the end of that but you can not see the output in the folder. But here the core dumped occurs and I don't know the reason of that. I put the
screenshot of the final error in the terminal here.</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
The full program may be would be helpful to understand what the problem is so below you can find the complete written program. May be the problem is because of the program in some part that I don't know. </div>
<div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<span>#################################################################<br>
</span>
<div>#<br>
</div>
<div># Example of hyperthermia therapy induced by gold nanoparticles<br>
</div>
<div># irradiated by photons<br>
</div>
<div># <br>
</div>
<div>##################################################################<br>
</div>
<div> #=================================================================</div>
<div># VISUALISATION<br>
</div>
<div>#=================================================================<br>
</div>
<div>/vis/open VRML2FILE<br>
</div>
<div>/vis/drawVolume <br>
</div>
<div>/vis/viewer/set/viewpointThetaPhi 90 0<br>
</div>
<div>/vis/viewer/zoom 1<br>
</div>
<div>/vis/drawVolume<br>
</div>
<div>/vis/viewer/flush<br>
</div>
<div>/vis/drawVolume<br>
</div>
<div>/tracking/storeTrajectory 1<br>
</div>
<div>/vis/scene/add/trajectories <br>
</div>
<div>/vis/scene/endOfEventAction accumulate 10<br>
</div>
<div>#=================================================================<br>
</div>
<div># VERBOSE<br>
</div>
<div>#=================================================================<br>
</div>
<div>/gate/verbose Physic 1<br>
</div>
<div>/gate/verbose Cuts 0<br>
</div>
<div>/gate/verbose SD 0<br>
</div>
<div>/gate/verbose Actions 0<br>
</div>
<div>/gate/verbose Actor 0<br>
</div>
<div>/gate/verbose Step 0<br>
</div>
<div>/gate/verbose Error 0<br>
</div>
<div>/gate/verbose Warning 0<br>
</div>
<div>/gate/verbose Output 0<br>
</div>
<div>/gate/verbose Beam 0<br>
</div>
<div>/gate/verbose Volume 0<br>
</div>
<div>/gate/verbose Image 0<br>
</div>
<div>/gate/verbose Geometry 0<br>
</div>
<div>/gate/verbose Core 0<br>
</div>
<div>/run/verbose 0<br>
</div>
<div>/event/verbose 0<br>
</div>
<div>/tracking/verbose 0<br>
</div>
<div>/gate/output/verbose 1<br>
</div>
<div>#=================================================================<br>
</div>
<div># W O R L D<br>
</div>
<div>#=================================================================<br>
</div>
<div>/gate/geometry/setMaterialDatabase GateMaterials.db <br>
</div>
<div>/gate/world/geometry/setXLength 20. cm<br>
</div>
<div>/gate/world/geometry/setYLength 20. cm<br>
</div>
<div>/gate/world/geometry/setZLength 20. cm<br>
</div>
<div>/gate/world/setMaterial Air<br>
</div>
<div>/gate/geometry/rebuild<br>
</div>
<div>#=================================================================<br>
</div>
<div># P H A N T O M : M O B Y<br>
</div>
<div>#=================================================================<br>
</div>
<div>/gate/world/daughters/name Mouse <br>
</div>
<div>/gate/world/daughters/insert compressedMatrix <br>
</div>
<div>/gate/Mouse/geometry/insertReader interfile <br>
</div>
<div>/gate/Mouse/interfileReader/insertTranslator range <br>
</div>
<div>/gate/Mouse/interfileReader/rangeTranslator/readTable ./attenuation.dat<br>
</div>
<div>/gate/Mouse/interfileReader/rangeTranslator/describe 1 <br>
</div>
<div>/gate/Mouse/interfileReader/readFile ./MOBY1cmTumor.h33<br>
</div>
<div>/gate/Mouse/placement/setTranslation 0. 0. 0. cm<br>
</div>
<div>/gate/Mouse/placement/setRotationAxis 1 0 0<br>
</div>
<div>/gate/Mouse/placement/setRotationAngle 90 deg<br>
</div>
<div>/gate/Mouse/vis/forceWireframe <br>
</div>
<div>/gate/geometry/rebuild<br>
</div>
<div>#=================================================================<br>
</div>
<div># P H Y S I C S<br>
</div>
<div>#=================================================================<br>
</div>
<div>/gate/physics/addProcess OpticalAbsorption<br>
</div>
<div>/gate/physics/addProcess OpticalRayleigh<br>
</div>
<div>/gate/physics/addProcess OpticalMie<br>
</div>
<div>/gate/physics/addProcess OpticalBoundary<br>
</div>
<div>/gate/physics/addProcess NanoAbsorption <br>
</div>
<div>/gate/physics/processList Enabled<br>
</div>
<div>/gate/physics/processList Initialized<br>
</div>
<div>#=================================================================<br>
</div>
<div># T H E R M A L A C T O R<br>
</div>
<div>#=================================================================<br>
</div>
<div>/gate/actor/addActor ThermalActor nano<br>
</div>
<div>/gate/actor/nano/save Mobydose.mhd<br>
</div>
<div>/gate/actor/nano/attachTo Mouse<br>
</div>
<div>/gate/actor/nano/stepHitType random<br>
</div>
<div>/gate/actor/nano/setPosition 0. 0. 0. cm<br>
</div>
<div>/gate/actor/nano/setVoxelSize 0.25 0.25 0.25 mm<br>
</div>
<div>/gate/actor/nano/setDiffusionTime 2 s<br>
</div>
<div>/gate/actor/nano/setThermalDiffusivity 0.190 mm2/s<br>
</div>
<div>/gate/actor/nano/setBloodPerfusionRate 0.004<br>
</div>
<div>/gate/actor/nano/setBloodDensity 1.06E-6<br>
</div>
<div>/gate/actor/nano/setBloodHeatCapacity 3.6E6<br>
</div>
<div>/gate/actor/nano/setTissueDensity 1.04E-6<br>
</div>
<div>/gate/actor/nano/setTissueHeatCapacity 3.65E6<br>
</div>
<div>/gate/actor/nano/setSimulationScale 1E10<br>
</div>
<div>/gate/actor/nano/setNumberOfTimeFrames 60<br>
</div>
<div>/gate/actor/addActor SimulationStatisticActor Myactor<br>
</div>
<div>/gate/actor/Myactor/save Statistics.txt<br>
</div>
<div>/gate/actor/Myactor/attachTo Mouse<br>
</div>
<div>/gate/actor/Myactor/save EveryNSeconds 0.5<br>
</div>
<div>#=================================================================<br>
</div>
<div># INITIALISATION<br>
</div>
<div>#=================================================================<br>
</div>
<div>/gate/run/initialize<br>
</div>
<div>#=================================================================<br>
</div>
<div># S O U R C E<br>
</div>
<div>#=================================================================<br>
</div>
<div>/gate/source/addSource Mysource gps<br>
</div>
<div>/gate/source/Mysource/gps/particle opticalphoton<br>
</div>
<div>/gate/source/Mysource/gps/energytype Mono<br>
</div>
<div>/gate/source/Mysource/setActivity 20000 becquerel <br>
</div>
<div>/gate/source/Mysource/gps/polarization 1 0 0<br>
</div>
<div>/gate/source/Mysource/gps/monoenergy 1.51 eV<br>
</div>
<div>/gate/source/Mysource/gps/type Beam<br>
</div>
<div>/gate/source/Mysource/gps/pos/centre 0. 0.45 -1.3 cm <br>
</div>
<div>/gate/source/Mysource/gps/direction 0. 0. 1.<br>
</div>
<div>/gate/source/Mysource/gps/pos/shape Circle <br>
</div>
<div>/gate/source/Mysource/gps/pos/radius 2.5 mm <br>
</div>
<div>/gate/source/Mysource/gps/mintheta -30. deg <br>
</div>
<div>/gate/source/Mysource/gps/maxtheta 30. deg <br>
</div>
<div>/gate/source/Mysource/gps/minphi 0. deg <br>
</div>
<div>/gate/source/Mysource/gps/maxphi 360. deg <br>
</div>
<div>#=================================================================<br>
</div>
<div># R A N D O M<br>
</div>
<div>#=================================================================<br>
</div>
<div>/gate/random/setEngineName MersenneTwister<br>
</div>
<div>/gate/random/setEngineSeed auto<br>
</div>
<div>#/gate/random/setEngineSeed 666677<br>
</div>
<div>/gate/random/verbose 1<br>
</div>
<div>#=================================================================<br>
</div>
<div># A C Q U I S I T I O N<br>
</div>
<div>#=================================================================<br>
</div>
<div>/gate/application/setTimeSlice 60 s<br>
</div>
<div>/gate/application/setTimeStart 0 s<br>
</div>
<div>/gate/application/setTimeStop 60 s<br>
</div>
<span>/gate/application/startDAQ</span><br>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<img size="305555" contenttype="image/png" unselectable="on" tabindex="-1" style="user-select: none; width: 453.688px; height: 300.425px;" data-imgsize="custom" width="453.6877888250945" height="300.4251205489614" data-outlook-trace="F:1|T:1" src="cid:ae5d4b04-f1a8-4e80-bf4d-2e06fdf9a7b7"><br>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
If you do me a favor and guide me in this regard I would be so grateful. </div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
Respectfully</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<div id="Signature">
<div></div>
<div id="divtagdefaultwrapper" dir="ltr" style="font-size:12pt; color:#000000; font-family:Calibri,Helvetica,sans-serif">
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<div dir="ltr" style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; text-align:left; background-color:rgb(255,255,255)">
<span style="margin:0px; font-size:11pt; color:rgb(117,123,128); font-family:"Times New Roman",Times,serif"><i>Somayeh Asadi (PhD)</i></span></div>
<div dir="ltr" style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; text-align:left; background-color:rgb(255,255,255)">
<span style="margin:0px; font-size:11pt; color:rgb(117,123,128); font-family:"Times New Roman",Times,serif"><i>Postdoctoral Researcher </i></span></div>
<div dir="ltr" style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; text-align:left; background-color:rgb(255,255,255)">
<i style="color:rgb(117,123,128); font-family:"Times New Roman",Times,serif; font-size:11pt; font-variant-ligatures:inherit; font-variant-caps:inherit; font-weight:inherit">Department of Mechanical Engineering</i></div>
<div dir="ltr" style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; text-align:left; background-color:rgb(255,255,255)">
<i style="color:rgb(117,123,128); font-family:"Times New Roman",Times,serif; font-size:11pt; font-variant-ligatures:inherit; font-variant-caps:inherit; font-weight:inherit">Politecnico di Milano, Italy</i></div>
<div style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; text-align:start; background-color:rgb(255,255,255)">
<span style="color:rgb(117,123,128); font-family:"Times New Roman",Times,serif; font-size:9pt"><br>
</span></div>
<div style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; text-align:start; background-color:rgb(255,255,255)">
<span style="color:rgb(117,123,128); font-family:"Times New Roman",Times,serif; font-size:9pt">Via Giuseppe La Masa,1</span><br>
</div>
</div>
<div><span style="color:rgb(117,123,128); font-size:9pt; font-family:"Times New Roman",Times,serif">20156 - Milano - Italy</span><br>
<span style="color:rgb(117,123,128); font-size:9pt; font-family:"Times New Roman",Times,serif">phone: +39 0223998572</span><br>
<div style="font-family:Calibri,Arial,Helvetica,sans-serif; font-size:12pt; color:rgb(0,0,0)">
<div style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; text-align:start; background-color:rgb(255,255,255)">
<span style="margin:0px; font-size:10pt"></span><span style="margin:0px; font-size:11pt"></span><span style="margin:0px; color:rgb(117,123,128)"></span></div>
<div style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; text-align:start; background-color:rgb(255,255,255)">
<span style="margin:0px; font-size:11pt"></span></div>
<p style="margin-top:0px; margin-bottom:0px; font-family:Calibri,Helvetica,sans-serif,Helvetica,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; text-align:start; background-color:rgb(255,255,255); margin-top:0px; margin-bottom:0px">
<span style="margin:0px; font-size:11pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:11pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:11pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:11pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; color:rgb(117,123,128)"></span><span style="margin:0px; font-size:11pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:11pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:10pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:11pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; color:rgb(117,123,128)"></span><span style="margin:0px; font-size:11pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:10pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:10pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:11pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:10pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span></p>
<div style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; text-align:start; background-color:rgb(255,255,255)">
<span style="margin:0px; font-size:10pt; color:rgb(117,123,128); font-family:"Times New Roman",Times,serif">somayeh.asadi@polimi.</span><span style="margin:0px; font-size:10pt; color:rgb(117,123,128)">it</span></div>
<br>
</div>
</div>
</div>
</div>
</div>
<div id="appendonsend"></div>
<hr style="display:inline-block;width:98%" tabindex="-1">
<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>From:</b> Gate-users <gate-users-bounces@lists.opengatecollaboration.org> on behalf of gate-users-request@lists.opengatecollaboration.org <gate-users-request@lists.opengatecollaboration.org><br>
<b>Sent:</b> Tuesday, April 14, 2020 11:17 PM<br>
<b>To:</b> gate-users@lists.opengatecollaboration.org <gate-users@lists.opengatecollaboration.org><br>
<b>Subject:</b> Gate-users Digest, Vol 167, Issue 23</font>
<div> </div>
</div>
<div class="BodyFragment"><font size="2"><span style="font-size:11pt;">
<div class="PlainText">Send Gate-users mailing list submissions to<br>
gate-users@lists.opengatecollaboration.org<br>
<br>
To subscribe or unsubscribe via the World Wide Web, visit<br>
<a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users">
http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a><br>
or, via email, send a message with subject or body 'help' to<br>
gate-users-request@lists.opengatecollaboration.org<br>
<br>
You can reach the person managing the list at<br>
gate-users-owner@lists.opengatecollaboration.org<br>
<br>
When replying, please edit your Subject line so it is more specific<br>
than "Re: Contents of Gate-users digest..."<br>
<br>
<br>
Today's Topics:<br>
<br>
1. error while loading shared libraries: libG4global.so<br>
(Mohammed REZZOUG)<br>
2. Re: Core dumped, Error, Failed to create output (David Boersma)<br>
<br>
<br>
----------------------------------------------------------------------<br>
<br>
Message: 1<br>
Date: Tue, 14 Apr 2020 20:54:33 +0100<br>
From: Mohammed REZZOUG <nmedrezz@gmail.com><br>
To: gate-users@lists.opengatecollaboration.org<br>
Subject: [Gate-users] error while loading shared libraries:<br>
libG4global.so<br>
Message-ID:<br>
<CAOGFTHAM-babgiyS72cKX_CBz61FeNwOoRQzLuMqzdwzT=f0qg@mail.gmail.com><br>
Content-Type: text/plain; charset="utf-8"<br>
<br>
Dear Gate users<br>
I’m getting the following error:<br>
---<br>
med@med-SATELLITE-C855-2CE:~$ sudo condor_master<br>
[sudo] Mot de passe de med :<br>
med@med-SATELLITE-C855-2CE:~$ export GC_DOT_GATE_DIR=/home/med/linac2/main<br>
med@med-SATELLITE-C855-2CE:~$ export<br>
GC_GATE_EXE_DIR=/usr/local/GATE/Gate-9.0-install/bin<br>
med@med-SATELLITE-C855-2CE:~$<br>
/usr/local/GATE/Gate-9.0/cluster_tools/jobsplitter/gjs -numberofsplits 50<br>
-clusterplatform condor -condorscript<br>
/usr/local/GATE/Gate-9.0/cluster_tools/jobsplitter/script/condor.script<br>
/home/med/linac2/main/main.mac<br>
/usr/local/GATE/Gate-9.0/cluster_tools/jobsplitter/gjs:* error while<br>
loading shared libraries: libG4global.so: cannot open shared object file:<br>
No such file or directory*<br>
<br>
*----*<br>
Thank you very much for your reading and any suggestion.<br>
Sincere wishes,<br>
<br>
Rezzoug<br>
-------------- next part --------------<br>
An HTML attachment was scrubbed...<br>
URL: <<a href="http://lists.opengatecollaboration.org/pipermail/gate-users/attachments/20200414/dbbd07e3/attachment-0001.html">http://lists.opengatecollaboration.org/pipermail/gate-users/attachments/20200414/dbbd07e3/attachment-0001.html</a>><br>
<br>
------------------------------<br>
<br>
Message: 2<br>
Date: Tue, 14 Apr 2020 21:35:24 +0000<br>
From: David Boersma <david.boersma@acmit.at><br>
To: "gate-users@lists.opengatecollaboration.org"<br>
<gate-users@lists.opengatecollaboration.org><br>
Subject: Re: [Gate-users] Core dumped, Error, Failed to create output<br>
Message-ID: <e96b05dc542644f2a9028782cdc5c2e1@acmit.at><br>
Content-Type: text/plain; charset="iso-8859-1"<br>
<br>
Dear Somayeh Asadi,<br>
<br>
The error message basically says that it is not able to create the output file.<br>
I think that one quite commonly occurring way to get this error is if the directory in which you run Gate does not yet have an "output" subdirectory. You request that the output is written to "output/Mobydose.mhd"; the "output/" folder is *not* automatically
created if does not exist yet. (Or maybe it does exist, but you don't have writing permissions for it. Or maybe the disk is full.)<br>
<br>
Could you please let us know if this is the case, before we try fancier explanations?<br>
<br>
(Maybe someone should create a GitHub #issue about this. Inability to write the output to the configured filepath should not result in an ugly crash, it should either exit gracefully with a friendly informative error message, or it should kindly try to fix
it, if all it takes is creating a subdirectory automagically.)<br>
<br>
<br>
HTH,<br>
<br>
David<br>
<br>
________________________________<br>
Von: Gate-users <gate-users-bounces@lists.opengatecollaboration.org> im Auftrag von Somayeh Asadi <somayeh.asadi@polimi.it><br>
Gesendet: Dienstag, 14. April 2020 14:18:45<br>
An: gate-users@lists.opengatecollaboration.org<br>
Betreff: [Gate-users] Core dumped, Error, Failed to create output<br>
<br>
Dear Gate User<br>
<br>
I want to run the ready program in Gate with the name of Thermal being in the folder of Imaging/Thermal in the subfolder of GateContrib-master. In the program, It was asked for the two outputs name: Mobydose.mhd and Statistics.txt written in the part related
to Actor.<br>
<br>
/vis/open VRML2FILE<br>
/vis/drawVolume<br>
/vis/viewer/set/viewpointThetaPhi 90 0<br>
/vis/viewer/zoom 1<br>
/vis/drawVolume<br>
/vis/viewer/flush<br>
/vis/drawVolume<br>
/tracking/storeTrajectory 1<br>
/vis/scene/add/trajectories<br>
/vis/scene/endOfEventAction accumulate 10<br>
#################################################<br>
/gate/actor/addActor ThermalActor nano<br>
/gate/actor/nano/save output/Mobydose.mhd<br>
/gate/actor/nano/attachTo Mouse<br>
/gate/actor/nano/stepHitType random<br>
/gate/actor/nano/setPosition 0. 0. 0. cm<br>
/gate/actor/nano/setVoxelSize 0.25 0.25 0.25 mm<br>
/gate/actor/nano/setDiffusionTime 2 s<br>
/gate/actor/nano/setThermalDiffusivity 0.190 mm2/s<br>
/gate/actor/nano/setBloodPerfusionRate 0.004<br>
/gate/actor/nano/setBloodDensity 1.06E-6<br>
/gate/actor/nano/setBloodHeatCapacity 3.6E6<br>
/gate/actor/nano/setTissueDensity 1.04E-6<br>
/gate/actor/nano/setTissueHeatCapacity 3.65E6<br>
/gate/actor/nano/setSimulationScale 1E10<br>
/gate/actor/nano/setNumberOfTimeFrames 60<br>
/gate/actor/addActor SimulationStatisticActor Myactor<br>
/gate/actor/Myactor/save output/Statistics.txt<br>
/gate/actor/Myactor/attachTo Mouse<br>
/gate/actor/Myactor/save EveryNSeconds 0.5<br>
<br>
<br>
<br>
When the program is running, core dumped accrues, n output created and the error in below is received:<br>
----------------------------------------------------------------------------------------------------------------<br>
terminate called after throwing an instance of 'itk::ImageFileReaderException'<br>
what(): /home/BuildFiles/ITK/InsightToolkit-5.0.0-Source/Modules/IO/ImageBase/include/itkImageFileReader.hxx:136:<br>
Could not create IO object for reading file output/Mobydose-AbsorptionMap.mhd<br>
Tried to create one of the following:<br>
GDCMImageIO<br>
You probably failed to set a file suffix, or<br>
set the suffix to an unsupported type.<br>
<br>
Aborted (core dumped)<br>
----------------------------------------------------------------------------------------------------------------<br>
<br>
Has any person had the same problem and know about the meaning of this error?<br>
"I have installed ITK and put the part related to the optical photon in ON".<br>
Thank you very much for your reading and any suggestion.<br>
<br>
Sincere Wishes,<br>
<br>
<br>
<br>
<br>
Somayeh Asadi (PhD)<br>
Postdoctoral Researcher<br>
Department of Mechanical Engineering<br>
Politecnico di Milano, Italy<br>
<br>
Via Giuseppe La Masa,1<br>
20156 - Milano - Italy<br>
phone: +39 0223998572<br>
<br>
somayeh.asadi@polimi.it<br>
<br>
-------------- next part --------------<br>
An HTML attachment was scrubbed...<br>
URL: <<a href="http://lists.opengatecollaboration.org/pipermail/gate-users/attachments/20200414/1fbadad3/attachment.html">http://lists.opengatecollaboration.org/pipermail/gate-users/attachments/20200414/1fbadad3/attachment.html</a>><br>
<br>
------------------------------<br>
<br>
Subject: Digest Footer<br>
<br>
_______________________________________________<br>
Gate-users mailing list<br>
Gate-users@lists.opengatecollaboration.org<br>
<a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a><br>
<br>
------------------------------<br>
<br>
End of Gate-users Digest, Vol 167, Issue 23<br>
*******************************************<br>
</div>
</span></font></div>
</body>
</html>