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<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
Dear Gate User</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
I want to run the ready program in Gate with the name of Thermal being in the folder of Imaging/Thermal in the subfolder of GateContrib-master. In the program, It was asked for the two outputs name: <span style="color: rgb(0, 0, 0); font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt;">Mobydose.mhd
and </span><span style="color: rgb(0, 0, 0); font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt;">Statistics.txt written in the part related to Actor. </span></div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<span style="color: rgb(0, 0, 0); font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt;"><br>
</span></div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<span style="color: rgb(0, 0, 0); font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt;"><span><span>/vis/open VRML2FILE<br>
</span>
<div>/vis/drawVolume <br>
</div>
<div>/vis/viewer/set/viewpointThetaPhi 90 0<br>
</div>
<div>/vis/viewer/zoom 1<br>
</div>
<div>/vis/drawVolume<br>
</div>
<div>/vis/viewer/flush<br>
</div>
<div>/vis/drawVolume<br>
</div>
<div>/tracking/storeTrajectory 1<br>
</div>
<div>/vis/scene/add/trajectories <br>
</div>
<span>/vis/scene/endOfEventAction accumulate 10</span><br>
</span></span></div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<span style="color: rgb(0, 0, 0); font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt;"><span>#################################################</span></span></div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<span style="color: rgb(0, 0, 0); font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt;"><span>/gate/actor/addActor ThermalActor nano<br>
</span>
<div>/gate/actor/nano/save output/Mobydose.mhd<br>
</div>
<div>/gate/actor/nano/attachTo Mouse<br>
</div>
<div>/gate/actor/nano/stepHitType random<br>
</div>
<div>/gate/actor/nano/setPosition 0. 0. 0. cm<br>
</div>
<div>/gate/actor/nano/setVoxelSize 0.25 0.25 0.25 mm<br>
</div>
<div>/gate/actor/nano/setDiffusionTime 2 s<br>
</div>
<div>/gate/actor/nano/setThermalDiffusivity 0.190 mm2/s<br>
</div>
<div>/gate/actor/nano/setBloodPerfusionRate 0.004<br>
</div>
<div>/gate/actor/nano/setBloodDensity 1.06E-6<br>
</div>
<div>/gate/actor/nano/setBloodHeatCapacity 3.6E6<br>
</div>
<div>/gate/actor/nano/setTissueDensity 1.04E-6<br>
</div>
<div>/gate/actor/nano/setTissueHeatCapacity 3.65E6<br>
</div>
<div>/gate/actor/nano/setSimulationScale 1E10<br>
</div>
<div>/gate/actor/nano/setNumberOfTimeFrames 60<br>
</div>
<div>/gate/actor/addActor SimulationStatisticActor Myactor<br>
</div>
<div>/gate/actor/Myactor/save output/Statistics.txt<br>
</div>
<div>/gate/actor/Myactor/attachTo Mouse<br>
</div>
<span>/gate/actor/Myactor/save EveryNSeconds 0.5</span><br>
</span></div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<span style="color: rgb(0, 0, 0); font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt;"><span><br>
</span></span></div>
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<span style="color: rgb(0, 0, 0); font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt;"><span><br>
</span></span></div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<span style="color: rgb(0, 0, 0); font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt;"><span><br>
</span></span></div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
When the program is running, core dumped accrues, n output created and the error in below is received:</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
----------------------------------------------------------------------------------------------------------------</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<span>terminate called after throwing an instance of 'itk::ImageFileReaderException'<br>
</span>
<div> what(): /home/BuildFiles/ITK/InsightToolkit-5.0.0-Source/Modules/IO/ImageBase/include/itkImageFileReader.hxx:136:<br>
</div>
<div> Could not create IO object for reading file output/Mobydose-AbsorptionMap.mhd<br>
</div>
<div> Tried to create one of the following:<br>
</div>
<div> GDCMImageIO<br>
</div>
<div> You probably failed to set a file suffix, or<br>
</div>
<div> set the suffix to an unsupported type.<br>
</div>
<div><br>
</div>
<div>Aborted (core dumped)<br>
</div>
<span></span>----------------------------------------------------------------------------------------------------------------</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
Has any person had the same problem and know about the meaning of this error? </div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
"I have installed ITK and put the part related to the optical photon in ON".</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
Thank you very much for your reading and any suggestion. </div>
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<br>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
Sincere Wishes, </div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
<div style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0);">
<br>
</div>
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<br>
</div>
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<br>
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<span style="margin:0px; font-size:11pt; color:rgb(117,123,128); font-family:"Times New Roman",Times,serif"><i>Somayeh Asadi (PhD)</i></span></div>
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<span style="margin:0px; font-size:11pt; color:rgb(117,123,128); font-family:"Times New Roman",Times,serif"><i>Postdoctoral Researcher </i></span></div>
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<i style="color:rgb(117,123,128); font-family:"Times New Roman",Times,serif; font-size:11pt; font-variant-ligatures:inherit; font-variant-caps:inherit; font-weight:inherit">Department of Mechanical Engineering</i></div>
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<i style="color:rgb(117,123,128); font-family:"Times New Roman",Times,serif; font-size:11pt; font-variant-ligatures:inherit; font-variant-caps:inherit; font-weight:inherit">Politecnico di Milano, Italy</i></div>
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<span style="color:rgb(117,123,128); font-family:"Times New Roman",Times,serif; font-size:9pt">Via Giuseppe La Masa,1</span><br>
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<div><span style="color:rgb(117,123,128); font-size:9pt; font-family:"Times New Roman",Times,serif">20156 - Milano - Italy</span><br>
<span style="color:rgb(117,123,128); font-size:9pt; font-family:"Times New Roman",Times,serif">phone: +39 0223998572</span><br>
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<span style="margin:0px; font-size:11pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:11pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:11pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:11pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; color:rgb(117,123,128)"></span><span style="margin:0px; font-size:11pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:11pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:10pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:11pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols; color:rgb(117,123,128)"></span><span style="margin:0px; font-size:11pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:10pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:10pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:11pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-size:10pt; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span><span style="margin:0px; font-family:Calibri,Helvetica,sans-serif,EmojiFont,"Apple Color Emoji","Segoe UI Emoji",NotoColorEmoji,"Segoe UI Symbol","Android Emoji",EmojiSymbols"></span></p>
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<span style="margin:0px; font-size:10pt; color:rgb(117,123,128); font-family:"Times New Roman",Times,serif">somayeh.asadi@polimi.</span><span style="margin:0px; font-size:10pt; color:rgb(117,123,128)">it</span></div>
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