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Dear David,</div>
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<br>
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Thanks for your response.</div>
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<br>
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Printing the processes used in emstandard_opt3 gives:</div>
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<span>* e-<br>
</span>
<div> - msc<br>
</div>
<div> - eIoni<br>
</div>
<div> - eBrem<br>
</div>
<div> - ePairProd<br>
</div>
<div> * gamma<br>
</div>
<div> - phot<br>
</div>
<div> - compt<br>
</div>
<div> - conv<br>
</div>
<div> - Rayl<br>
</div>
<span></span><br>
</div>
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Hence where eBrem has been used before with setSecBiasing, compt should instead be used to enhance the production of contamination electrons from the linac. So in the file main-write-PhS.mac if I add </div>
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<span>/process/em/setSecBiasing compt linac 100 100 MeV (*)<br>
</span><span></span>this should produce 100 times the electrons as it does for gammas and eBrem.</div>
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<br>
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However it does not. Using the deprecated command does work:</div>
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<span>/gate/physics/addProcess Compton<br>
</span>
<div>/gate/physics/processes/Compton/setModel StandardModel gamma<br>
</div>
<div>/gate/physics/processes/Compton/activateSplitting gamma 100<br>
</div>
<div>/gate/physics/processes/Compton/addFilter volumeFilter secondaries<br>
</div>
<span>/gate/physics/processes/Compton/secondaries/volumeFilter/addVolume linac</span><br>
</div>
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<span><br>
</span></div>
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<span>(I am just using the full linac volume for this example).</span></div>
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I've attached the full code at the end just incase of confusion.</div>
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<br>
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Many thanks,<br>
Lana</div>
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<br>
</div>
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<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">On
Tue, Jan 28, 2020 at 7:27 PM Lana Beck <lana.beck@bristol.ac.uk> wrote:</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">>
Dear Dr Sarrut,</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">></span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">>
I have a question about the example in your gitbook:</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">><span> </span></span><a href="https://dsarrut.gitbooks.io/gate-exercises/content/exercise4-linac.html" target="_blank" rel="noopener noreferrer" style="margin: 0px; font-size: 14.6667px; font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; background-color: rgb(255, 255, 255)">https://dsarrut.gitbooks.io/gate-exercises/content/exercise4-linac.html</a><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">>
and the associated code here:</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">></span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">><span> </span></span><a href="https://gitlab.in2p3.fr/davidsarrut/gate-exercices/blob/master/linac/mac/main-write-PhS.mac" target="_blank" rel="noopener noreferrer" style="margin: 0px; font-size: 14.6667px; font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; background-color: rgb(255, 255, 255)">https://gitlab.in2p3.fr/davidsarrut/gate-exercices/blob/master/linac/mac/main-write-PhS.mac</a><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">></span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">the
gitbook link is no more maintained, please use:</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<a href="https://davidsarrut.pages.in2p3.fr/gate-exercices-site/" target="_blank" rel="noopener noreferrer" style="margin: 0px; font-size: 14.6667px; font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; background-color: rgb(255, 255, 255)">https://davidsarrut.pages.in2p3.fr/gate-exercices-site/</a><span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important"><span> </span>(for
the moment it</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">is
essentially the same).</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">>
If you prefer I can send my question to the gate-users list but as it</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">>
pertained to your gitbook particularly I thought I should email you first.</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">></span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">yes
I prefer to copy the gate-user list please.</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">>
I was wondering about the line (110) in the example:</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">>
/process/em/setSecBiasing eBrem target 100 100 MeV</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">></span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">>
However, in the Section 5.2.1.1 in the gate manual it says to use:</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
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/gate/physics/processes/Bremsstrahlung/activateSplitting e- 100</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">></span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">><span> </span></span><a href="https://opengate.readthedocs.io/en/latest/cut_and_variance_reduction_technics.html" target="_blank" rel="noopener noreferrer" style="margin: 0px; font-size: 14.6667px; font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; background-color: rgb(255, 255, 255)">https://opengate.readthedocs.io/en/latest/cut_and_variance_reduction_technics.html</a><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">>
and then I guess filters could be used for volume and energy.</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">></span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">>
Is there a difference in these two methods? Of course the latter one</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
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requires using:</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
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/gate/physics/addProcess Bremsstrahlung</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
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/gate/physics/processes/Bremsstrahlung/setModel StandardModel e-</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">>
/gate/physics/processes/Bremsstrahlung/setModel StandardModel e+</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">>
in order for activateSplitting to work. However I'm not really sure what</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">>
happens when adding the Bremsstrahlung process since eBrem is already</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">>
included in the initialised methods of emstandard_opt3.</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">></span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">></span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">the
opengate doc is wrong here and should be updated. Please use the first</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">macro
"setSecBiasing". The second sets of macros are now deprecated and</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">should
not be used.</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">>
I am interested in the electron contamination from the linac head and I</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">>
need a large sample. Hence, I wanted to do something similar for Compton</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">>
Scattering and I'm not sure which method to use.</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">></span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">For
Compton Scattering, use the same setSecBiasing command but with the</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">Compton
process name. You should find the name of the Compton somewhere in</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">the
Geant4 document, sorry, dont know where ...</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">David</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">></span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">>
Any advice would be greatly appreciated.</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">></span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">>
Kind regards,</span><br style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255)">
<span style="color: rgb(50, 49, 48); font-family: "Segoe UI", "Segoe UI Web (West European)", "Segoe UI", -apple-system, system-ui, Roboto, "Helvetica Neue", sans-serif; font-size: 14.6667px; background-color: rgb(255, 255, 255); display: inline !important">>
Lana</span><br>
</div>
<div id="Signature">
<div id="divtagdefaultwrapper" dir="ltr" style="font-size:12pt; color:#000000; font-family:Calibri,Helvetica,sans-serif">
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0; margin-bottom:0"><br>
</p>
<p style="margin-top: 0px; margin-bottom: 0px;margin-top:0; margin-bottom:0"><br>
</p>
<div style="margin-top: 0px; margin-bottom: 0px;margin-top:0; margin-bottom:0"><span>#=====================================================<br>
</span>
<div># VERBOSITY<br>
</div>
<div>#=====================================================<br>
</div>
<div><br>
</div>
<div>/control/execute mac/verbose.mac<br>
</div>
<div><br>
</div>
<div>#=====================================================<br>
</div>
<div># VISUALISATION<br>
</div>
<div>#=====================================================<br>
</div>
<div><br>
</div>
<div>/control/execute mac/visu.mac<br>
</div>
<div><br>
</div>
<div># =====================================================<br>
</div>
<div># GEOMETRY<br>
</div>
<div># =====================================================<br>
</div>
<div><br>
</div>
<div>/gate/geometry/setMaterialDatabase data/GateMaterials.db<br>
</div>
<div><br>
</div>
<div><br>
</div>
<div># WORLD<br>
</div>
<div>/gate/world/setMaterial Air<br>
</div>
<div>/gate/world/geometry/setXLength 1.0 m<br>
</div>
<div>/gate/world/geometry/setYLength 1.0 m<br>
</div>
<div>/gate/world/geometry/setZLength 1.0 m<br>
</div>
<div>/gate/world/vis/setVisible 1<br>
</div>
<div><br>
</div>
<div># LINAC HEAD<br>
</div>
<div># World origin is in the center of the beam e- source (not the real<br>
</div>
<div># isocenter of the gantry room)<br>
</div>
<div>/gate/geometry/setMaterialDatabase data/LinacMaterials.db<br>
</div>
<div>/control/execute mac/linac_head.mac<br>
</div>
<div><br>
</div>
<div># VIRTUAL PLANE FOR PHASE SPACE<br>
</div>
<div>/gate/linac/daughters/name PhS_Plane<br>
</div>
<div>/gate/linac/daughters/insert cylinder<br>
</div>
<div>/gate/PhS_Plane/setMaterial Vacuum<br>
</div>
<div>/gate/PhS_Plane/geometry/setRmin 0 mm<br>
</div>
<div>/gate/PhS_Plane/geometry/setRmax 40 mm<br>
</div>
<div>/gate/PhS_Plane/geometry/setHeight 1 nm<br>
</div>
<div>/gate/PhS_Plane/placement/setTranslation 0.0 0.0 -297 mm<br>
</div>
<div>/gate/PhS_Plane/vis/setColor white<br>
</div>
<div>/gate/PhS_Plane/vis/setVisible 1<br>
</div>
<div><br>
</div>
<div># =====================================================<br>
</div>
<div># PHYSICS<br>
</div>
<div># =====================================================<br>
</div>
<div><br>
</div>
<div>/gate/physics/addPhysicsList emstandard_opt3<br>
</div>
<div><br>
</div>
<div>/gate/physics/Gamma/SetCutInRegion world 1 mm<br>
</div>
<div>/gate/physics/Electron/SetCutInRegion world 1 mm<br>
</div>
<div>/gate/physics/Positron/SetCutInRegion world 1 mm<br>
</div>
<div><br>
</div>
<div># /gate/physics/addProcess Compton<br>
</div>
<div># /gate/physics/processes/Compton/setModel StandardModel gamma<br>
</div>
<div># /gate/physics/processes/Compton/activateSplitting gamma 100<br>
</div>
<div># /gate/physics/processes/Compton/addFilter volumeFilter secondaries<br>
</div>
<div># /gate/physics/processes/Compton/secondaries/volumeFilter/addVolume linac<br>
</div>
<div><br>
</div>
<div>#=====================================================<br>
</div>
<div># DETECTORS<br>
</div>
<div>#=====================================================<br>
</div>
<div><br>
</div>
<div># ----------------------------------------------------<br>
</div>
<div># Kill actor to stop particles when they go inside a region<br>
</div>
<div><br>
</div>
<div>/gate/actor/addActor KillActor killer0<br>
</div>
<div>/gate/actor/killer0/attachTo kill_box_top<br>
</div>
<div>/gate/actor/addActor KillActor killer1<br>
</div>
<div>/gate/actor/killer1/attachTo kill_box_bottom<br>
</div>
<div>/gate/actor/addActor KillActor killer2<br>
</div>
<div>/gate/actor/killer2/attachTo kill_box_bottom2<br>
</div>
<div><br>
</div>
<div># ----------------------------------------------------<br>
</div>
<div># the following actor regularly store the current number of<br>
</div>
<div># event/track/step in a file<br>
</div>
<div><br>
</div>
<div>/gate/actor/addActor SimulationStatisticActor stat<br>
</div>
<div>/gate/actor/stat/save output/output-writePhS-stat.txt<br>
</div>
<div>/gate/actor/stat/saveEveryNSeconds 20<br>
</div>
<div><br>
</div>
<div># ----------------------------------------------------<br>
</div>
<div># Phase space storage (a PhS for gamma, another for e-)<br>
</div>
<div><br>
</div>
<div>/gate/actor/addActor PhaseSpaceActor PhS_g<br>
</div>
<div>/gate/actor/PhS_g/attachTo PhS_Plane<br>
</div>
<div>/gate/actor/PhS_g/save output/output-PhS-g.root<br>
</div>
<div>/gate/actor/PhS_g/enableParticleName false<br>
</div>
<div>/gate/actor/PhS_g/enableProductionVolume false<br>
</div>
<div>/gate/actor/PhS_g/enableProductionProcess false<br>
</div>
<div>/gate/actor/PhS_g/useVolumeFrame true<br>
</div>
<div>/gate/actor/PhS_g/addFilter particleFilter<br>
</div>
<div>/gate/actor/PhS_g/particleFilter/addParticle gamma<br>
</div>
<div>/gate/actor/PhS_g/enableZPosition true<br>
</div>
<div>#/gate/actor/PhS_g/saveEveryNSeconds 20<br>
</div>
<div><br>
</div>
<div># /gate/actor/addActor PhaseSpaceActor PhS_e<br>
</div>
<div># /gate/actor/PhS_e/attachTo PhS_Plane<br>
</div>
<div># /gate/actor/PhS_e/save output/output-PhS-e.root<br>
</div>
<div># /gate/actor/PhS_e/enableParticleName false<br>
</div>
<div># /gate/actor/PhS_e/enableProductionVolume false<br>
</div>
<div># /gate/actor/PhS_e/enableProductionProcess false<br>
</div>
<div># /gate/actor/PhS_e/useVolumeFrame true<br>
</div>
<div># /gate/actor/PhS_e/addFilter particleFilter<br>
</div>
<div># /gate/actor/PhS_e/particleFilter/addParticle e-<br>
</div>
<div># /gate/actor/PhS_e/enableZPosition false<br>
</div>
<div># /gate/actor/PhS_e/saveEveryNSeconds 20<br>
</div>
<div><br>
</div>
<div>#=====================================================<br>
</div>
<div># INITIALISATION<br>
</div>
<div>#=====================================================<br>
</div>
<div><br>
</div>
<div>/gate/run/initialize<br>
</div>
<div><br>
</div>
<div># Bremsstrahlung splitting : generate 100 photon (if below 100 MeV) with weight 1/100<br>
</div>
<div>/process/em/setSecBiasing eBrem target 100 100 MeV<br>
</div>
<div>/process/em/setSecBiasing compt linac 100 100 MeV<br>
</div>
<div><br>
</div>
<div>#=====================================================<br>
</div>
<div># BEAMS<br>
</div>
<div>#=====================================================<br>
</div>
<div><br>
</div>
<div>/gate/source/addSource mybeam gps<br>
</div>
<div>/gate/source/mybeam/gps/particle e-<br>
</div>
<div>/gate/source/mybeam/gps/pos/type Beam<br>
</div>
<div>/gate/source/mybeam/gps/pos/rot1 0 1 0<br>
</div>
<div>/gate/source/mybeam/gps/pos/rot2 1 0 0<br>
</div>
<div>/gate/source/mybeam/gps/pos/shape Circle<br>
</div>
<div>/gate/source/mybeam/gps/pos/centre 0. 0. 0.6 mm<br>
</div>
<div>/gate/source/mybeam/gps/pos/sigma_x 1.274 mm<br>
</div>
<div>/gate/source/mybeam/gps/pos/sigma_y 1.274 mm<br>
</div>
<div>/gate/source/mybeam/gps/ang/rot1 1 0 0<br>
</div>
<div>/gate/source/mybeam/gps/ang/rot2 0 1 0<br>
</div>
<div>/gate/source/mybeam/gps/ang/type beam1d<br>
</div>
<div>/gate/source/mybeam/gps/ang/sigma_r 0 deg<br>
</div>
<div>/gate/source/mybeam/gps/ene/type Gauss<br>
</div>
<div>/gate/source/mybeam/gps/ene/mono 6.7 MeV<br>
</div>
<div>/gate/source/mybeam/gps/ene/sigma 0.077 MeV<br>
</div>
<div>/gate/source/mybeam/gps/direction 0 0 -1<br>
</div>
<div><br>
</div>
<div>#=====================================================<br>
</div>
<div># START BEAMS<br>
</div>
<div>#=====================================================<br>
</div>
<div><br>
</div>
<div>/gate/random/setEngineName MersenneTwister<br>
</div>
<div># /gate/random/setEngineSeed auto<br>
</div>
<div>/gate/random/setEngineSeed 123456<br>
</div>
<div><br>
</div>
<div>/gate/application/noGlobalOutput<br>
</div>
<div><br>
</div>
<div>#/tracking/verbose 2<br>
</div>
<div><br>
</div>
<div>/gate/application/setTotalNumberOfPrimaries 10<br>
</div>
<div>/gate/application/start<br>
</div>
<div><br>
</div>
<div>/gate/physics/processList Enabled<br>
</div>
<span>/gate/physics/processList Initialized</span><br>
</div>
<p style="margin-top: 0px; margin-bottom: 0px;"></p>
</div>
</div>
</body>
</html>