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Dear Simon,
<div class=""><br class="">
</div>
<div class="">Find the LUTs to download here: <a href="https://geant4.web.cern.ch/support/download" class="">https://geant4.web.cern.ch/support/download</a> (<span style="font-family: Arial, Helvetica, sans-serif; font-size: 14px; orphans: 2; widows: 2; background-color: rgb(255, 255, 255);" class="">G4RealSurface2.1.1</span>)</div>
<div class="">The “Enabling_LUT_Davis_Model” option was meant to bridge the time period between the geant4 and Gate releases when the model was first released in 2018. You should not have to go through that process anymore. </div>
<div class=""><br class="">
</div>
<div class="">Just follow the regular installation procedure of geant4 and Gate and enable the LUTDavis options. </div>
<div class="">In ccmake for geant4 use flag GEANT4_INSTALL_DATA to download the data from the link above.</div>
<div class="">In ccmake for Gate use flag GATE_USE_DAVIS.</div>
<div class=""><br class="">
</div>
<div class="">Let us know if it worked!</div>
<div class="">Best wishes,</div>
<div class="">Mariele</div>
<div class="">
<div><br class="">
<blockquote type="cite" class="">
<div class="">On 13 Aug 2019, at 12:00, <a href="mailto:gate-users-request@lists.opengatecollaboration.org" class="">
gate-users-request@lists.opengatecollaboration.org</a> wrote:</div>
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Today's Topics:<br class="">
<br class="">
1. Re: VGate (Howard)<br class="">
2. Re: Enabling LUT Davis model (David Boersma)<br class="">
<br class="">
<br class="">
----------------------------------------------------------------------<br class="">
<br class="">
Message: 1<br class="">
Date: Mon, 12 Aug 2019 14:41:59 -0400<br class="">
From: Howard <lomahu@gmail.com><br class="">
To: tmerlin <Thibaut.Merlin@univ-brest.fr><br class="">
Cc: gate-users@lists.opengatecollaboration.org<br class="">
Subject: Re: [Gate-users] VGate<br class="">
Message-ID:<br class="">
<span class="Apple-tab-span" style="white-space:pre"></span><CAKr9h5X4ZAhA9q-sfn=v7scDeohdZQKY5M5bO6GuxKSho+vFTA@mail.gmail.com><br class="">
Content-Type: text/plain; charset="utf-8"<br class="">
<br class="">
Hi Thibaut,<br class="">
<br class="">
The replacement of those lines, ie, replacing interfile with image and<br class="">
interfileReader with imageReader, did the trick. It is working now. Thanks!<br class="">
<br class="">
Howard<br class="">
<br class="">
On Mon, Aug 12, 2019 at 2:28 PM tmerlin <Thibaut.Merlin@univ-brest.fr><br class="">
wrote:<br class="">
<br class="">
<blockquote type="cite" class="">Hi Howard,<br class="">
<br class="">
In the macros/VoxelizedSource.mac file, try to replace the following lines:<br class="">
<br class="">
*/gate/source/voxel_brain/reader/insert interfile*<br class="">
*/gate/source/voxel_brain/interfileReader/translator/insert range*<br class="">
*/gate/source/voxel_brain/interfileReader/rangeTranslator/readTable<br class="">
./phantom/activity_range.dat*<br class="">
*/gate/source/voxel_brain/interfileReader/rangeTranslator/describe 1*<br class="">
*/gate/source/voxel_brain/interfileReader/readFile<br class="">
./phantom/brain_phantom.h33*<br class="">
<br class="">
by:<br class="">
<br class="">
*/gate/source/voxel_brain/reader/insert image*<br class="">
*/gate/source/voxel_brain/imageReader/translator/insert range*<br class="">
*/gate/source/voxel_brain/imageReader/rangeTranslator/readTable<br class="">
./phantom/activity_range.dat*<br class="">
*/gate/source/voxel_brain/imageReader/rangeTranslator/describe 1*<br class="">
*/gate/source/voxel_brain/imageReader/readFile ./phantom/brain_phantom.h33*<br class="">
<br class="">
Hope this works for you<br class="">
<br class="">
<br class="">
Cheers,<br class="">
<br class="">
Thibaut Merlin<br class="">
<br class="">
<br class="">
On 12/08/2019 19:52, Howard wrote:<br class="">
<br class="">
Hi David,<br class="">
<br class="">
Thank you for taking the time to reply to my question. I am using Gate<br class="">
v8.2 and was trying to run the example provided in the following training<br class="">
session:<br class="">
<br class="">
<br class="">
http://www.opengatecollaboration.org/Materials2015/PracticalExercises2015/VoxelizedSources&Phantoms<br class="">
<br class="">
<br class="">
The error was similar to the one reported by PAT back in August 2018:<br class="">
<br class="">
GateSourceVoxelInterfileReader.cc (l.25): GateSourceVoxelInterfileReader<br class="">
is obsolete, use GateSourceVoxelImageReader instead!<br class="">
<br class="">
I wonder whether there is a workaround to this error. Many thanks!<br class="">
<br class="">
Howard<br class="">
<br class="">
<br class="">
<br class="">
On Mon, Aug 12, 2019 at 4:51 AM David Boersma <david.boersma@acmit.at><br class="">
wrote:<br class="">
<br class="">
<blockquote type="cite" class="">Hi Howard and PAT,<br class="">
<br class="">
<br class="">
Which version of VGate are you using? Could you try the latest release<br class="">
(8.2, released in February)?<br class="">
<br class="">
<br class="">
And are you referring to the "shared disk" issue or the "interfile"<br class="">
issue?<br class="">
<br class="">
<br class="">
If the latter: I searched the current version of GateContrib and I do not<br class="">
find any references to "GateSourceVoxelInterfileReader". It's possible<br class="">
that this has been fixed in the meantime. So then the solution would be to<br class="">
run "git pull" in your GateContrib clone and check what happened to the<br class="">
example that you are referring to (I'm not sure which example that is).<br class="">
It's possible that this particular example has actually been removed in the<br class="">
meantime.<br class="">
<br class="">
<br class="">
I hope that this helps a bit. If it doesn't, then I hope that an imaging<br class="">
expert (which I am not) will come back from vacation soon and give a better<br class="">
answer your question. 😊<br class="">
<br class="">
<br class="">
Good luck,<br class="">
<br class="">
David Boersma<br class="">
------------------------------<br class="">
*Von:* Gate-users <gate-users-bounces@lists.opengatecollaboration.org><br class="">
im Auftrag von Howard <lomahu@gmail.com><br class="">
*Gesendet:* Freitag, 9. August 2019 22:50:10<br class="">
*An:* gate-users@lists.opengatecollaboration.org<br class="">
*Betreff:* Re: [Gate-users] VGate<br class="">
<br class="">
Dear Gate-users,<br class="">
Does anyone happen to know the workaround the problem as PAT reported<br class="">
back in August, 2018? Thanks very much.<br class="">
Howard [Gate-users] VGate *P. T.* ptpphysics at gmail.com<br class="">
<gate-users%40lists.opengatecollaboration.org?Subject=Re%3A%20%5BGate-users%5D%20VGate&In-Reply-To=%3CCAJ9ZRTLFukiRprD_UOQAjEcxVo_POgumWpUGzTA%3DrxDU1eBkMg%40mail.gmail.com%3E><br class="">
*Sat Aug 25 12:14:02 CEST 2018*<br class="">
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<br class="">
------------------------------<br class="">
<br class="">
Dear Gate expert,<br class="">
<br class="">
Shared folder not working in new vgate. Furthermore, Example related<br class="">
to Voxelized Phantom _Source don't execute correctly and show error:<br class="">
<br class="">
GateSourceVoxelInterfileReader.cc (l.25):<br class="">
GateSourceVoxelInterfileReader is obsolete, use<br class="">
GateSourceVoxelImageReader instead!<br class="">
<br class="">
Regards,<br class="">
PAT<br class="">
<br class="">
_______________________________________________<br class="">
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Gate-users@lists.opengatecollaboration.org<br class="">
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</blockquote>
<br class="">
<br class="">
_______________________________________________<br class="">
Gate-users mailing listGate-users@lists.opengatecollaboration.orghttp://lists.opengatecollaboration.org/mailman/listinfo/gate-users<br class="">
<br class="">
--<br class="">
Thibaut MERLIN -- PhD<br class="">
<br class="">
Docteur en Imagerie Médicale au Laboratoire de Traitement de l'Information Medicale (LaTIM - INSERM UMR 1101)<br class="">
Institut Brestois de recherche en Bio-Santé (IBRBS)<br class="">
12 Avenue Foch, 29200 Brest, FRANCE<br class="">
Tel: 06.75.12.24.90<br class="">
<br class="">
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<br class="">
Message: 2<br class="">
Date: Tue, 13 Aug 2019 09:17:14 +0000<br class="">
From: David Boersma <david.boersma@acmit.at><br class="">
To: simon templar <treean01@hotmail.com>,<br class="">
<span class="Apple-tab-span" style="white-space:pre"></span>"gate-users@lists.opengatecollaboration.org"<br class="">
<span class="Apple-tab-span" style="white-space:pre"></span><gate-users@lists.opengatecollaboration.org><br class="">
Subject: Re: [Gate-users] Enabling LUT Davis model<br class="">
Message-ID: <a4cbd0fb3d39448c8aa2f8156a09b17b@acmit.at><br class="">
Content-Type: text/plain; charset="big5"<br class="">
<br class="">
Dear Simon,<br class="">
<br class="">
<br class="">
It looks like those tables are stored on the "midas3" servers of KitWare, where we used to store also other Gate-related data files. Unfortunately KitWare decided to discontinue that service in summer 2018. Since this is technically kind of a bug, requiring
action by developers to fix it, I created a GitHub issue for it: https://github.com/OpenGATE/Gate/issues/256<br class="">
<br class="">
<br class="">
Hopefully this gets resolved quickly. Sorry for the inconvenience!<br class="">
<br class="">
/David<br class="">
<br class="">
<br class="">
________________________________<br class="">
Von: Gate-users <gate-users-bounces@lists.opengatecollaboration.org> im Auftrag von simon templar <treean01@hotmail.com><br class="">
Gesendet: Montag, 12. August 2019 17:38:18<br class="">
An: gate-users@lists.opengatecollaboration.org<br class="">
Betreff: [Gate-users] Enabling LUT Davis model<br class="">
<br class="">
Dear Gate-users,<br class="">
I want to enable the LUT davis model with GATE version 8.0. When I followed the installation guide of website Enabling_LUT_Davis_Model<http://wiki.opengatecollaboration.org/index.php/Enabling_LUT_Davis_Model> to manually modifying GEANT4. I found the web link
LUTs<https://midas3.kitware.com/midas/download/item/321835/Davis_LUTs.tar.gz> of step 2 was fail. Does anyone else know how to download the LUTs I need.<br class="">
<br class="">
Simon Wang<br class="">
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</blockquote>
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