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<div>Dear Gate users,</div>
<div><br>
</div>
<div>I have the some question as Mr. Nícollas.</div>
<div><span style="font-size: 12pt;">How can I estimate the Dose with only a few particles simulated?</span><br>
</div>
<div><span style="font-size: 12pt;">Thanks in advance,</span><br>
</div>
<div><br>
</div>
<div>Daniel Franzé</div>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>De:</b> Gate-users <gate-users-bounces@lists.opengatecollaboration.org> em nome de Nicollas Goncalves Cavedini <nicollas.cavedini@acad.pucrs.br><br>
<b>Enviado:</b> quarta-feira, 2 de maio de 2018 11:36<br>
<b>Para:</b> David.Sarrut@creatis.insa-lyon.fr; gate-users<br>
<b>Assunto:</b> Re: [Gate-users] DoseActor parallelization</font>
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Dear Sarrut,
<div><br>
<div>Can we assume the dose is linear to scale?<br>
<br>
My question is because I would like to simulate the accumulated dose due to a radiotracer decaying along the time.</div>
<div><br>
</div>
<div>Regards,</div>
<div><br>
</div>
<div>I<br>
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<td><span style="color:#777">Remetente notificado por</span> <br>
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<div dir="ltr"><font face="arial, helvetica, sans-serif" color="#0b5394"><b>Nícollas Gonçalves Cavedini</b></font>
<div><span style="color:rgb(11,83,148); font-family:arial,helvetica,sans-serif; font-size:12.8px">Undergraduate Student - Medical Physics (PUCRS)</span><br>
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Contact: +55 (51) 99922-9957</font></div>
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<div class="x_gmail_quote">2018-04-30 2:16 GMT-03:00 David Sarrut <span dir="ltr">
<<a href="mailto:David.Sarrut@creatis.insa-lyon.fr" target="_blank" id="LPlnk809608" class="OWAAutoLink" previewremoved="true">David.Sarrut@creatis.insa-lyon.fr</a>></span>:<br>
<blockquote class="x_gmail_quote" style="margin:0 0 0 .8ex; border-left:1px #ccc solid; padding-left:1ex">
<div dir="ltr">Hello,
<div><br>
</div>
<div>you should simulate much less particles (say, few hours of computing time) then scale the results ...</div>
<span class="x_HOEnZb"><font color="#888888">
<div><br>
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<div>David</div>
</font></span>
<div>PS: please keep messages to the mailing list</div>
</div>
<div class="x_HOEnZb">
<div class="x_h5"><br>
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<div dir="ltr">On Fri, Apr 27, 2018 at 6:38 PM Nicollas Goncalves Cavedini <<a href="mailto:nicollas.cavedini@acad.pucrs.br" target="_blank" id="LPlnk451581" class="OWAAutoLink" previewremoved="true">nicollas.cavedini@acad.pucrs.<wbr>br</a>> wrote:<br>
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<div dir="ltr"><img width="0" height="0" class="x_m_-6017031790048007099m_401354092682785474mailtrack-img" alt="" style="display: flex; user-select: none;" src="cid:7a13ab79-5810-4d2d-80ae-536b31355f6a">
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Dear Sarrut,
<div>I'm going to explain better my work.</div>
<div>I would like to calculate the dose maps (in Gy) in cylinders around a 99mTc source during a long period of time (30minutes), considering the decay along this period.</div>
<div>
<div>However, it is impossible to simulate this activity and time, because the simulation will take years in our cluster (40G RAM x 2 clusters)...<br>
</div>
<div>
<div style="color:rgb(34,34,34); font-family:arial,sans-serif; font-size:small; font-style:normal; font-weight:400; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; background-color:rgb(255,255,255)">
My script is attached to this message.</div>
<div style="color:rgb(34,34,34); font-family:arial,sans-serif; font-size:small; font-style:normal; font-weight:400; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; background-color:rgb(255,255,255)">
Our configuration is a set of tubes (7cm height and 1.5 cm diameter) filled with a polymer, around a point source
<span style="color:rgb(34,34,34); font-family:arial,sans-serif; font-size:small; font-style:normal; font-weight:400; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; background-color:rgb(255,255,255); float:none; display:inline">
(1 Ci of activity) in different distances.</span></div>
<div style="color:rgb(34,34,34); font-family:arial,sans-serif; font-size:small; font-style:normal; font-weight:400; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; background-color:rgb(255,255,255)">
<span style="color:rgb(34,34,34); font-family:arial,sans-serif; font-size:small; font-style:normal; font-weight:400; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; background-color:rgb(255,255,255); float:none; display:inline">Our
proposal is to compare the simulation with an experimental setting.</span></div>
<div style="color:rgb(34,34,34); font-family:arial,sans-serif; font-size:small; font-style:normal; font-weight:400; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; background-color:rgb(255,255,255)">
<span style="color:rgb(34,34,34); font-family:arial,sans-serif; font-size:small; font-style:normal; font-weight:400; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; background-color:rgb(255,255,255); float:none; display:inline">I
appreciate a lot your attention and help.</span></div>
<div style="color:rgb(34,34,34); font-family:arial,sans-serif; font-size:small; font-style:normal; font-weight:400; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; background-color:rgb(255,255,255)">
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<div dir="ltr"><font face="arial, helvetica, sans-serif" color="#0b5394"><b>Nícollas Gonçalves Cavedini</b></font>
<div><span style="color:rgb(11,83,148); font-family:arial,helvetica,sans-serif; font-size:12.8px">Undergraduate Student - Medical Physics (PUCRS)</span><br>
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Contact: +55 (51) 99922-9957</font></div>
<div><span style="color:rgb(11,83,148); font-family:arial,helvetica,sans-serif; font-size:12.8px">Porto Alegre, Brazil.</span><br>
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<div class="x_gmail_quote">2018-04-27 2:17 GMT-03:00 David Sarrut <span dir="ltr">
<<a href="mailto:David.Sarrut@creatis.insa-lyon.fr" target="_blank" id="LPlnk119038" class="OWAAutoLink" previewremoved="true">David.Sarrut@creatis.insa-<wbr>lyon.fr</a>></span>:<br>
<blockquote class="x_gmail_quote" style="margin:0 0 0 .8ex; border-left:1px #ccc solid; padding-left:1ex">
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<div class="x_gmail_quote"><span>On Thu, Apr 26, 2018 at 3:20 PM, Nicollas Goncalves Cavedini
<span dir="ltr"><<a href="mailto:nicollas.cavedini@acad.pucrs.br" target="_blank" id="LPlnk866214" class="OWAAutoLink" previewremoved="true">nicollas.cavedini@acad.pucrs.<wbr>br</a>></span> wrote:<br>
</span>
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Dear David,
<div>I thought i could only do this for images. For example, if I merge five dose maps with 0.2 Ci will I have a dose map of 1 Ci ?</div>
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<div>yes ! btw is it advised use Gy no Ci ;)</div>
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<div>David</div>
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<div>Best regards,<br>
<br>
<br>
<br>
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<div dir="ltr"><font face="arial, helvetica, sans-serif" color="#0b5394"><b>Nícollas Gonçalves Cavedini</b></font>
<div><span style="color:rgb(11,83,148); font-family:arial,helvetica,sans-serif; font-size:12.8px">Undergraduate Student - Medical Physics (PUCRS)</span><br>
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Contact: +55 (51) 99922-9957</font></div>
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<div class="x_gmail_quote">2018-04-26 3:05 GMT-03:00 David Sarrut <span dir="ltr">
<<a href="mailto:David.Sarrut@creatis.insa-lyon.fr" target="_blank" id="LPlnk495839" class="OWAAutoLink" previewremoved="true">David.Sarrut@creatis.insa-<wbr>lyon.fr</a>></span>:<br>
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<div dir="ltr">Hello,
<div><br>
</div>
<div>no parallelization specific to one actor, but you can always launch the same Gate simulation in parallel provided that you don't use the same random seed number (use: /gate/random/setEngineSeed auto). You will need to merge all outputs at the end of all
simulations. </div>
<div><br>
</div>
<div>Sincerely,</div>
<div>David</div>
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<div class="x_m_-6017031790048007099m_401354092682785474m_-5279787659353970137m_523682531226704430h5">
On Wed, Apr 25, 2018 at 3:25 PM, Nicollas Goncalves Cavedini <span dir="ltr"><<a href="mailto:nicollas.cavedini@acad.pucrs.br" target="_blank" id="LPlnk499764" class="OWAAutoLink" previewremoved="true">nicollas.cavedini@acad.pucrs.<wbr>br</a>></span> wrote:<br>
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<div>Dear Gate users!</div>
<div>I would like to ask if someone knows if there's anyway to parallelize the DoseActor in GATE v7.1. I want to simulate 99m-Tc sources with 1Ci of activity on the university cluster but the time of simulations it is too long.</div>
<div>I appreciate any help in advance!</div>
<div>Regards,</div>
<div>
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<div dir="ltr"><font face="arial, helvetica, sans-serif" color="#0b5394"><b>Nícollas Gonçalves Cavedini</b></font>
<div><span style="color:rgb(11,83,148); font-family:arial,helvetica,sans-serif; font-size:12.8px">Undergraduate Student - Medical Physics (PUCRS)</span><br>
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Contact: +55 (51) 99922-9957</font></div>
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<div dir="ltr">David Sarrut, Phd<br>
Directeur de recherche CNRS<br>
CREATIS, UMR CNRS 5220, Inserm U1206
<div>Centre de lutte contre le cancer Léon Bérard<br>
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<a href="http://www.creatis.insa-lyon.fr/~dsarrut" target="_blank" id="LPlnk96999" class="OWAAutoLink" previewremoved="true">http://www.creatis.insa-lyon.<wbr>fr/~dsarrut</a><br>
______________________________<wbr>___</div>
<div> "2 + 2 = 5, for extremely large values of 2"<br>
______________________________<wbr>___</div>
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<div class="x_m_-6017031790048007099m_401354092682785474m_-5279787659353970137gmail_signature">
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<div dir="ltr">David Sarrut, Phd<br>
Directeur de recherche CNRS<br>
CREATIS, UMR CNRS 5220, Inserm U1206
<div>Centre de lutte contre le cancer Léon Bérard<br>
<a href="https://maps.google.com/?q=28+rue+La%C3%ABnnec&entry=gmail&source=g" target="_blank" id="LPlnk897261" class="OWAAutoLink" previewremoved="true">28 rue Laënnec</a>, 69373 Lyon cedex 08<br>
Tel : 04 78 78 51 51 / 06 74 72 05 42<br>
<a href="http://www.creatis.insa-lyon.fr/~dsarrut" target="_blank" id="LPlnk377154" class="OWAAutoLink" previewremoved="true">http://www.creatis.insa-lyon.<wbr>fr/~dsarrut</a><br>
______________________________<wbr>___</div>
<div> "2 + 2 = 5, for extremely large values of 2"<br>
______________________________<wbr>___</div>
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-- <br>
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<div>
<div dir="ltr">David Sarrut, Phd<br>
Directeur de recherche CNRS<br>
CREATIS, UMR CNRS 5220, Inserm U1206
<div>Centre de lutte contre le cancer Léon Bérard<br>
<a href="https://maps.google.com/?q=28+rue+La%C3%ABnnec&entry=gmail&source=g" id="LPlnk48073" class="OWAAutoLink" previewremoved="true">28 rue Laënnec</a>, 69373 Lyon cedex 08<br>
Tel : 04 78 78 51 51 / 06 74 72 05 42<br>
<a href="http://www.creatis.insa-lyon.fr/~dsarrut" target="_blank" id="LPlnk633306" class="OWAAutoLink" previewremoved="true">http://www.creatis.insa-lyon.<wbr>fr/~dsarrut</a><br>
______________________________<wbr>___</div>
<div> "2 + 2 = 5, for extremely large values of 2"<br>
______________________________<wbr>___</div>
</div>
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