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--></style></head><body lang=ZH-CN><div class=WordSection1><pre><i><span lang=EN-US style='font-family:"Arial",sans-serif'>Dear ALL!<o:p></o:p></span></i></pre><pre><i><span lang=EN-US style='font-family:"Arial",sans-serif'>Recently, I'm trying to implement a dynamic voxelized source(MOBY) and generate projection of different motion frames, but have run into some problems. </span></i><span lang=EN-US style='font-family:"Arial",sans-serif'><o:p></o:p></span></pre><pre><i><span lang=EN-US style='font-family:"Arial",sans-serif'>All of macros</span></i><i>（</i><i><span lang=EN-US style='font-family:"Arial",sans-serif'>I have listed in the end of email</span></i><i>）</i><i><span lang=EN-US style='font-family:"Arial",sans-serif'> followed the Gate V8.0 users guide how to set up my RT(real-time) source/phantom. When we use <b>CPU to simulate, these macros ran smoothly</b>, no errors raise and the results are correct. However, when we use GPU (</span></i><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>/gate/source/addSource </span><span lang=EN-US style='font-family:"Arial",sans-serif'>GPUEmisTomo<i>), we got the errors:</i><o:p></o:p></span></pre><pre><i><span lang=EN-US style='font-family:"Arial",sans-serif'>"The volume 'no_attached_volume_given' cannot be found in the list of volume. Abort"~<o:p></o:p></span></i></pre><pre><i><span lang=EN-US style='font-family:"Arial",sans-serif'>By the way,<b> for the common static voxelized phantom, GPU works well.</b></span></i><span lang=EN-US style='font-family:"Arial",sans-serif'><o:p></o:p></span></pre><pre style='margin-left:21.0pt;text-indent:-21.0pt;mso-list:l0 level1 lfo1'><![if !supportLists]><span lang=EN-US style='font-family:Wingdings'><span style='mso-list:Ignore'>n<span style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><i><span lang=EN-US style='font-family:"Arial",sans-serif'>My first question is: <b><span style='color:red'>is it possible to simulate real-time phantom(more than one frame) by GPU in GATE V 8.0</span></b>? </span></i><span lang=EN-US style='font-family:"Arial",sans-serif'><o:p></o:p></span></pre><pre style='margin-left:21.0pt;text-indent:-21.0pt;mso-list:l0 level1 lfo1'><![if !supportLists]><span lang=EN-US style='font-family:Wingdings'><span style='mso-list:Ignore'>n<span style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><i><span lang=EN-US style='font-family:"Arial",sans-serif'>Second, <b>is it possible to got the projections of different frame in the same simulation?</b> So far, we don't know how to split the projection by PET_2_STIR, so we just simulate every frame one-by-one. </span></i><span lang=EN-US style='font-family:"Arial",sans-serif'><o:p></o:p></span></pre><pre style='margin-left:21.0pt;text-indent:-21.0pt;mso-list:l0 level1 lfo1'><![if !supportLists]><span lang=EN-US style='font-family:Wingdings'><span style='mso-list:Ignore'>n<span style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><i><span lang=EN-US style='font-family:"Arial",sans-serif'>Thirdly, is there anyone <b>using the MOBY(Mode 4) to creat the output motion vectors</b> (output_name_vec_frame1_frameN.txt) from phantom surface? How to link it to STIR's motion-compensated image reconstruction(MCIR) algorithm? </span></i><span lang=EN-US style='font-family:"Arial",sans-serif'><o:p></o:p></span></pre><pre><span lang=EN-US style='font-family:"Arial",sans-serif'><o:p> </o:p></span></pre><pre><span lang=EN-US style='font-family:"Arial",sans-serif'>Thanks in advance!<o:p></o:p></span></pre><div><pre><span lang=EN-US style='font-family:"Times New Roman",serif'>Sincerely</span><span lang=EN-US style='font-family:"Arial",sans-serif'><o:p></o:p></span></pre></div><div><pre><span lang=EN-US style='font-family:"Times New Roman",serif'>Zhaoheng</span><span lang=EN-US style='font-family:"Arial",sans-serif'><o:p></o:p></span></pre></div><div><pre><span lang=EN-US style='font-family:"Arial",sans-serif'>--<o:p></o:p></span></pre></div><pre><span lang=EN-US style='font-size:11.5pt;font-family:"Times New Roman",serif'>Zhaoheng Xie, Ph.D. Student </span><span lang=EN-US style='font-size:10.0pt;font-family:"Times New Roman",serif'><br></span><span lang=EN-US style='font-size:10.5pt;font-family:"Times New Roman",serif'>Molecular Medical Imaging Lab</span><span lang=EN-US style='font-size:10.0pt;font-family:"Times New Roman",serif'><br></span><span lang=EN-US style='font-size:10.5pt;font-family:"Times New Roman",serif'>Dept. of Biomedical Engineering </span><span lang=EN-US style='font-size:10.0pt;font-family:"Arial",sans-serif'><br></span><span lang=EN-US style='font-family:"Times New Roman",serif'>College of Engineering, Peking University</span><span lang=EN-US style='font-size:10.0pt;font-family:"Arial",sans-serif'><br></span><span lang=EN-US style='font-family:"Times New Roman",serif'>Beijing 100871, P.R.China</span><span lang=EN-US style='font-family:"Arial",sans-serif'><o:p></o:p></span></pre><pre><span lang=EN-US style='font-family:"Arial",sans-serif'><o:p> </o:p></span></pre><pre><span lang=EN-US style='font-family:"Arial",sans-serif'><o:p> </o:p></span></pre><pre><span lang=EN-US style='font-family:"Arial",sans-serif'>#===================================================<o:p></o:p></span></pre><div id=spnEditorSign><div id=spnEditorSign><p class=MsoNormal><span lang=EN-US style='font-family:"Times New Roman",serif'># Voxellized phantom</span><span lang=EN-US style='font-family:SimSun'><o:p></o:p></span></p></div><div id=spnEditorSign><p class=MsoNormal><span lang=EN-US style='font-family:"Times New Roman",serif'>#===================================================</span></p></div><div id=spnEditorSign><p class=MsoNormal><span lang=EN-US style='font-family:"Times New Roman",serif'>/gate/world/daughters/name ncat</span></p></div><div id=spnEditorSign><p class=MsoNormal><span lang=EN-US style='font-family:"Times New Roman",serif'>/gate/world/daughters/insert regularMatrix</span></p></div><div id=spnEditorSign><p class=MsoNormal><span lang=EN-US style='font-family:"Times New Roman",serif'>/gate/ncat/geometry/insertReader interfile</span></p></div><div id=spnEditorSign><p class=MsoNormal><span lang=EN-US style='font-family:"Times New Roman",serif'>/gate/RTPhantom/insert RTVPhantom</span></p></div><div id=spnEditorSign><p class=MsoNormal><span lang=EN-US style='font-family:"Times New Roman",serif'>/gate/RTVPhantom/AttachTo ncat</span></p></div><div id=spnEditorSign><p class=MsoNormal><span lang=EN-US style='font-family:"Times New Roman",serif'>/gate/RTVPhantom/setHeaderFileName moby_phantom.hdr</span></p></div><div id=spnEditorSign><p class=MsoNormal><span lang=EN-US style='font-family:"Times New Roman",serif'>/gate/RTVPhantom/SetNumberOfFrames 6 #Notice, 6 frames are named: </span><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>lesion_atn_1.bin….lesion_atn_6.bin </span></p></div><div id=spnEditorSign><p class=MsoNormal><span lang=EN-US style='font-family:"Times New Roman",serif'>/gate/RTVPhantom/SetTimePerFrame 0.83 s</span></p></div><div id=spnEditorSign><p class=MsoNormal><span lang=EN-US style='font-family:"Times New Roman",serif'>/gate/ncat/interfileReader/insertTranslator range</span></p></div><div id=spnEditorSign><p class=MsoNormal><span lang=EN-US style='font-family:"Times New Roman",serif'>/gate/ncat/interfileReader/rangeTranslator/readTable attenuation_range.dat</span></p></div><div id=spnEditorSign><p class=MsoNormal><span lang=EN-US style='font-family:"Times New Roman",serif'>/gate/ncat/interfileReader/rangeTranslator/describe 1</span></p></div><div id=spnEditorSign><p class=MsoNormal><span lang=EN-US style='font-family:"Times New Roman",serif'>/gate/ncat/placement/setTranslation 0. 0. 0. mm</span></p></div><div id=spnEditorSign><p class=MsoNormal><span lang=EN-US style='font-family:"Times New Roman",serif'>/gate/RTVPhantom/setBaseFileName lesion</span></p></div><div id=spnEditorSign><p class=MsoNormal><span lang=EN-US style='font-family:"Times New Roman",serif'>/gate/ncat/placement/setRotationAxis 1 0 0</span></p></div><div id=spnEditorSign><p class=MsoNormal><span lang=EN-US style='font-family:"Times New Roman",serif'>/gate/ncat/placement/setRotationAngle 0 deg</span></p></div><div id=spnEditorSign><p class=MsoNormal><span lang=EN-US style='font-family:"Times New Roman",serif'>/gate/ncat/attachVoxelPhantomSD</span></p></div><div><div><div><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>#==================================================</span><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'><o:p></o:p></span></p></div><div><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'># VOXELIZED SOURCES</span><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'><o:p></o:p></span></p></div><div><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>#==================================================</span><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'><o:p></o:p></span></p></div><div><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>/gate/source/addSource voxel_brain GPUEmisTomo</span><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'><o:p></o:p></span></p></div><div><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>/gate/source/voxel_brain/setGPUBufferSize 5000000 <o:p></o:p></span></p></div><div><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>/gate/source/voxel_brain/setGPUDeviceID 1</span><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'><o:p></o:p></span></p></div><div><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>/gate/source/voxel_brain/reader/insert interfile</span><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'><o:p></o:p></span></p></div><div><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>/gate/RTVPhantom/AttachToSource voxel_brain</span><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'><o:p></o:p></span></p></div><div><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>/gate/source/voxel_brain/interfileReader/translator/insert range</span><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'><o:p></o:p></span></p></div><div><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>/gate/source/voxel_brain/interfileReader/rangeTranslator/readTable activity_range.dat</span><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'><o:p></o:p></span></p></div><div><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>#/gate/source/voxel_brain/interfileReader/SetTimeActivityTablesFrom acti.range # We don't want to simulate kinetic information,so we don’t set this parameter. </span><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'><o:p></o:p></span></p></div><div><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>/gate/source/voxel_brain/interfileReader/SetTimeSampling 0.83 s</span><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'><o:p></o:p></span></p></div><div><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>/gate/source/voxel_brain/interfileReader/verbose 0</span><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'><o:p></o:p></span></p></div><div><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>/gate/source/voxel_brain/interfileReader/rangeTranslator/describe 1</span><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'><o:p></o:p></span></p></div><div><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'><o:p> </o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>/gate/source/voxel_brain/setPosition -18.56 -18.56 -7.25 mm</span><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'><o:p></o:p></span></p></div><div><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>/gate/source/voxel_brain/setType backtoback</span><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'><o:p></o:p></span></p></div><div><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>/gate/source/voxel_brain/gps/particle gamma</span><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'><o:p></o:p></span></p></div><div><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>/gate/source/voxel_brain/gps/energytype Mono</span><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'><o:p></o:p></span></p></div><div><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>/gate/source/voxel_brain/gps/monoenergy 0.511 MeV</span><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'><o:p></o:p></span></p></div><div><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>/gate/source/voxel_brain/gps/confine NULL</span><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'><o:p></o:p></span></p></div><div><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>/gate/source/voxel_brain/gps/angtype iso</span><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'><o:p></o:p></span></p></div><div><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'><o:p> </o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>moby_phantom.hdr<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>!INTERFILE :=<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>imagedata byte order := LITTLEENDIAN<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>!matrix size [1] := 128<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>!matrix size [2] := 128<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>!name of data file := lesion_atn_1.bin <o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>!number format := unsigned integer<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>scaling factor (mm/pixel) [1] := +0.290e+00<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>scaling factor (mm/pixel) [2] := +0.290e+00<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>!number of slices := 80<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>slice orientation := Transverse<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>slice thickness (pixels) := +0.2900e+00<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>centre-centre slice separation (pixels) := +1.000000e+00<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>filter name := Unknown<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>filter parameters := Cutoff<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>method of attenuation correction := measured<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>scatter corrected := N<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>oblique reconstruction := N<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'>!END OF INTERFILE :=<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Times New Roman",serif;color:black'><o:p> </o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'>Activity.dat :<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'>5<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'>1 1 1<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'>2 2 2<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'>5 6 3<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'>10 10 5<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'>15 30 10<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'><o:p> </o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'><o:p> </o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'>Attenuation_range.dat :<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'>6<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'> 0 0 Air false 0.0 0.0 0.0 0.0<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'> 1 1 LungMoby false 0.0 0.0 0.0 0.0<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'> 2 2 Body false 0.0 0.0 0.0 0.0<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'> 5 5 RibBone false 0.0 0.0 0.0 0.0<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'> 6 6 SpineBone false 0.0 0.0 0.0 0.0<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'> 15 30 Heart false 0.0 0.0 0.0 0.0<o:p></o:p></span></p><p class=MsoNormal style='background:white'><span lang=EN-US style='font-family:"Arial",sans-serif;color:black'><o:p> </o:p></span></p></div><div><p class=MsoNormal style='background:white'><span lang=EN-US style='font-size:12.0pt;font-family:"Times New Roman",serif;color:black'><o:p> </o:p></span></p></div></div></div></div><p class=MsoNormal><span lang=EN-US style='font-size:12.0pt'><o:p> </o:p></span></p></div></body></html>