<html><head></head><body lang="fr-FR" style="background-color: rgb(255, 255, 255); line-height: initial;"> <div style="width: 100%; font-size: initial; font-family: Calibri, 'Slate Pro', sans-serif, sans-serif; color: rgb(31, 73, 125); text-align: initial; background-color: rgb(255, 255, 255);">Thank you very much Thomas. Now I must compile again gate enabling ITK :-) </div><div style="width: 100%; font-size: initial; font-family: Calibri, 'Slate Pro', sans-serif, sans-serif; color: rgb(31, 73, 125); text-align: initial; background-color: rgb(255, 255, 255);">Thanks again</div><div style="width: 100%; font-size: initial; font-family: Calibri, 'Slate Pro', sans-serif, sans-serif; color: rgb(31, 73, 125); text-align: initial; background-color: rgb(255, 255, 255);"><br></div><div style="width: 100%; font-size: initial; font-family: Calibri, 'Slate Pro', sans-serif, sans-serif; color: rgb(31, 73, 125); text-align: initial; background-color: rgb(255, 255, 255);"><br></div> <div style="width: 100%; font-size: initial; font-family: Calibri, 'Slate Pro', sans-serif, sans-serif; color: rgb(31, 73, 125); text-align: initial; background-color: rgb(255, 255, 255);"><br style="display:initial"></div> <div style="font-size: initial; font-family: Calibri, 'Slate Pro', sans-serif, sans-serif; color: rgb(31, 73, 125); text-align: initial; background-color: rgb(255, 255, 255);">Envoyé de mon smartphone BlackBerry 10.</div> <table width="100%" style="background-color:white;border-spacing:0px;"> <tbody><tr><td colspan="2" style="font-size: initial; text-align: initial; background-color: rgb(255, 255, 255);"> <div style="border-style: solid none none; border-top-color: rgb(181, 196, 223); border-top-width: 1pt; padding: 3pt 0in 0in; font-family: Tahoma, 'BB Alpha Sans', 'Slate Pro'; font-size: 10pt;"> <div><b>De: </b>Thomas DESCHLER</div><div><b>Envoyé: </b>mardi 21 novembre 2017 17:59</div><div><b>À: </b>Luc SIMON</div><div><b>Cc: </b>Gate-users</div><div><b>Objet: </b>Re: [Gate-users] DICOM READER</div></div></td></tr></tbody></table><div style="border-style: solid none none; border-top-color: rgb(186, 188, 209); border-top-width: 1pt; font-size: initial; text-align: initial; background-color: rgb(255, 255, 255);"></div><br><div id="_originalContent" style=""><div dir="ltr">Hi Luc,<div><br></div><div>For an example of DICOM reading you can have a look <a href="https://github.com/OpenGATE/GateContrib/tree/master/imaging/DICOM/mhd-dcm-comparison">here</a>.</div><div><br></div><div>To input all your DICOM CT files into Gate, you only need to give the path of one DICOM file with the command <i>setImage</i> and Gate will automatically find all the other DICOM files.</div><div><br></div><div>In your case just put in your macro : <span style="font-style:italic;font-size:12.8px">/gate/patient/geometry/</span><wbr style="font-size:12.8px"><span style="font-size:12.8px"><i>setImage data/CT.1487916943.746.1.dcm </i>and remove all the other setImage lines.</span></div><div><i><span style="font-size:12.8px"><br></span></i></div><div><span style="font-size:12.8px">I hope these tips will help you !</span></div><div><span style="font-size:12.8px"><br></span></div><div><span style="font-size:12.8px">Sincerely,</span></div><div><br></div><div>Thomas</div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><b><font color="#444444">Thomas DESCHLER</font></b><br><font color="#666666" style="font-size:12.8000001907349px">Doctorant en </font><font color="#666666">Radiophysique médicale<br><a href="http://www.iphc.cnrs.fr/" target="_blank"><font color="#666666">Institut Pluridisciplinaire Hubert Curien</font></a><br><a href="http://www.iphc.cnrs.fr/spip.php?page=rubrique&id_rubrique=143" target="_blank"><font color="#666666">Département Recherches Subatomiques</font></a> - Groupe DeSis<br>Bâtiment 35, Bureau 208<br></font></div><div dir="ltr"><font color="#666666"><br></font></div><div dir="ltr"><a href="https://mail.google.com/mail/u/0/?view=cm&fs=1&tf=1&to=Thomas.Deschler@iphc.cnrs.fr" title="[GMCP] Compose a new mail to Thomas.Deschler@iphc.cnrs.fr" rel="noreferrer" target="_blank"><font color="#666666">Thomas.Deschler@iphc.cnrs.fr</font></a></div><div><font color="#666666"><a href="tel:+33388106395" target="_blank"><font color="#666666">(+33) 03 88 10 63 95</font></a><br><a href="tel:+33620960749" target="_blank"><font color="#666666">(+33) 06 20 96 07 49</font></a></font><br></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div></div>
<br><div class="gmail_quote">2017-11-21 17:20 GMT+01:00 Luc SIMON <span dir="ltr"><<a href="mailto:uhqd75@gmail.com" target="_blank">uhqd75@gmail.com</a>></span>:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div><div>Dear Gaters<br><br></div>In the Release notes of GATE v8.0 we found a DICOM reader possibility. <br></div>It is written :<br><div style="font-size:16.6667px;font-family:monospace" class="m_-7576053628799725232gmail-">- <span class="m_-7576053628799725232gmail-highlight m_-7576053628799725232gmail-selected">DIC</span>OM Reader</div><div style="font-size:16.6667px;font-family:monospace" class="m_-7576053628799725232gmail-">#For details:</div><div style="font-size:16.6667px;font-family:monospace" class="m_-7576053628799725232gmail-">#<a href="http://wiki.opengatecollaboration.org/index.php/Users_Guide_V8.0:Voxelized_Source_" target="_blank">http://wiki.<wbr>opengatecollaboration.org/<wbr>index.php/Users_Guide_V8.0:<wbr>Voxelized_Source_</a></div><div style="font-size:16.6667px;font-family:monospace" class="m_-7576053628799725232gmail-">and_Phantom#Examples</div><div style="font-size:16.6667px;font-family:monospace" class="m_-7576053628799725232gmail-"><br></div><div style="font-size:16.6667px;font-family:monospace" class="m_-7576053628799725232gmail-"><br></div><div><div><div><div><div><div>When I go to this link I do not really find any DICOM reader example. I found some old .mhd reading examples. <br></div><div>My question is simple : do you have any simple exemples of a macro including a DICOM CT reading. <br></div><div>As DICOM images are not a single file, but a file for each slice, should I include in my macro something like</div><div><br></div><div>/gate/patient/geometry/<wbr>setImage data/CT.1487916943.746.1.dcm<br><div>/gate/patient/geometry/<wbr>setImage data/CT.1487916943.746.2.dcm<br><div>/gate/patient/geometry/<wbr>setImage data/CT.1487916943.746.3.dcm<br><div>/gate/patient/geometry/<wbr>setImage data/CT.1487916943.746.4.dcm<br><div>/gate/patient/geometry/<wbr>setImage data/CT.1487916943.746.5.dcm<br></div><div>/gate/patient/geometry/<wbr>setImage data/CT.1487916943.746.6.dcm<br><div>... (etc, ... one line per image)<br></div><div><br></div><div>Thank you for any help. <br></div><span class="HOEnZb"><font color="#888888"><div><br></div><div>Luc</div><div><br></div><div><br></div></font></span></div></div></div></div></div><span class="HOEnZb"><font color="#888888"><div>-- <br><div class="m_-7576053628799725232gmail_signature"><div dir="ltr"><div><div dir="ltr"><div>___________________<br><br>SIMON Luc, Physicien Médical, PhD<br>Département d'Ingénierie et de Physique Médicale - IUCT-Oncopole - Toulouse, FRANCE</div><div>INSERM UMR 1037 (CRCT) - Equipe 15 - Toulouse, FRANCE</div></div></div></div></div>
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