<html><head></head><body><div style="color:#000; background-color:#fff; font-family:Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;font-size:16px"><div id="yui_3_16_0_ym19_1_1501140473134_6317"><span id="yui_3_16_0_ym19_1_1501140473134_8020">Hello,</span></div><div id="yui_3_16_0_ym19_1_1501140473134_6317"><span><br></span></div><div id="yui_3_16_0_ym19_1_1501140473134_6317">You have one error and I have one guess for your problem. </div><div id="yui_3_16_0_ym19_1_1501140473134_6317"><br></div><div id="yui_3_16_0_ym19_1_1501140473134_6317" dir="ltr">The error that you have made is that GATE does not accept the value: 1.781E-08. It can only accept values in this format: 0.000001 and probably not smaller.</div><div id="yui_3_16_0_ym19_1_1501140473134_6317" dir="ltr">Moreover in the new guide that arb command is not proposed. In contrast, it has this type of commands:</div><div id="yui_3_16_0_ym19_1_1501140473134_6317" dir="ltr"><br></div><div id="yui_3_16_0_ym19_1_1501140473134_6317" dir="ltr"><a href="http://wiki.opengatecollaboration.org/index.php/Users_Guide_V8.0:Source#Defining_the_type_of_source" class="" id="yui_3_16_0_ym19_1_1501140473134_23119">http://wiki.opengatecollaboration.org/index.php/Users_Guide_V8.0:Source#Defining_the_type_of_source</a></div><pre style="font-family: monospace, Courier; background-color: rgb(249, 249, 249); border: 1px solid rgb(221, 221, 221); padding: 1em; line-height: 1.3em; font-size: 14px;" id="yui_3_16_0_ym19_1_1501140473134_18011"> ###################### Mode 1: Discrete Spectrum ###################
/gate/source/addsource spectrumLine gps
/gate/source/spectrumLine/gps/particle gamma
/gate/source/spectrumLine/gps/energytype UserSpectrum
/gate/source/spectrumLine/gps/setSpectrumFile ../data/DiscreteSpectrum.txt
/gate/source/spectrumLine/setIntensity 1
#################### Mode 1: Discrete Spectrum ####################</pre><div id="yui_3_16_0_ym19_1_1501140473134_6317"><span>etc.</span></div><div id="yui_3_16_0_ym19_1_1501140473134_6317"><span><br></span></div><div id="yui_3_16_0_ym19_1_1501140473134_6317"><span><br></span></div><div id="yui_3_16_0_ym19_1_1501140473134_6317">About the guess, I would like to ask you, where in your code is the command:</div><div id="yui_3_16_0_ym19_1_1501140473134_21349">/gate/run/initialize</div><div dir="ltr" id="yui_3_16_0_ym19_1_1501140473134_21350"><br id="yui_3_16_0_ym19_1_1501140473134_21351"></div><div dir="ltr" id="yui_3_16_0_ym19_1_1501140473134_21350"><br></div><div dir="ltr" id="yui_3_16_0_ym19_1_1501140473134_21350">Kind regards,</div><div dir="ltr" id="yui_3_16_0_ym19_1_1501140473134_21350">Konstantinos</div><div></div><div id="yui_3_16_0_ym19_1_1501140473134_6318"> </div><div class="signature" id="yui_3_16_0_ym19_1_1501140473134_6320"><div style="color:rgb(0, 0, 0);font-family:Arial;font-size:16px;font-style:normal;font-weight:normal;letter-spacing:normal;orphans:2;text-indent:0px;text-transform:none;white-space:normal;widows:2;word-spacing:0px;" id="yui_3_16_0_ym19_1_1501140473134_6319"><span style="font-style:italic;" id="yui_3_16_0_ym19_1_1501140473134_7974">-----------------------------------------------------</span></div><span style="color:rgb(0, 0, 0);font-family:Arial;font-size:16px;font-weight:normal;letter-spacing:normal;orphans:2;text-indent:0px;text-transform:none;white-space:normal;widows:2;word-spacing:0px;font-style:italic;" id="yui_3_16_0_ym19_1_1501140473134_6359"> Konstantinos Chatzipapas<br> Medical Physicist, </span><span style="color:rgb(0, 0, 0);font-family:Arial;font-size:16px;font-weight:normal;letter-spacing:normal;orphans:2;text-indent:0px;text-transform:none;white-space:normal;widows:2;word-spacing:0px;font-style:italic;">MSc<br></span><div style="color:rgb(0, 0, 0);font-family:Arial;font-size:16px;font-style:normal;font-weight:normal;letter-spacing:normal;orphans:2;text-indent:0px;text-transform:none;white-space:normal;widows:2;word-spacing:0px;" id="yui_3_16_0_ym19_1_1501140473134_6323"><div id="yui_3_16_0_ym19_1_1501140473134_6362"><span style="font-style:italic;" id="yui_3_16_0_ym19_1_1501140473134_6361"> <span style="font-weight:bold;" id="yui_3_16_0_ym19_1_1501140473134_6360">University of Patras</span></span></div><div id="yui_3_16_0_ym19_1_1501140473134_6322"><div id="yui_3_16_0_ym19_1_1501140473134_6363"><span style="font-style:italic;"><br></span></div><div id="yui_3_16_0_ym19_1_1501140473134_6321"><span style="font-style:italic;" id="yui_3_16_0_ym19_1_1501140473134_6364"><span class="Apple-tab-span" style="white-space:pre;"> </span> web page:<span class="Apple-converted-space"> </span><a rel="nofollow" target="_blank" href="http://www.physicsmag.com/">Physics Magazine</a></span></div></div></div></div> <div class="qtdSeparateBR"><br><br></div><div class="yahoo_quoted" style="display: block;"> <div style="font-family: Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif; font-size: 16px;"> <div style="font-family: HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif; font-size: 16px;"> <div dir="ltr"><font size="2" face="Arial"> Στις 10:28 π.μ. Πέμπτη, 27 Ιουλίου 2017, ο/η Niels van der Werf <nrvdwerf@gmail.com> έγραψε:<br></font></div> <br><br> <div class="y_msg_container"><div dir="ltr">Hello all,<br></div><div dir="ltr"><br></div><div dir="ltr">A couple of days ago I asked a question about voxilized phantoms. I am now one step further in my search. The voxilized phantom is accepted by GATE as an input. However, I cannot get it working as a voxilized source. On the wiki page an example is given for an interfile, but not for a meta image.<br></div><div dir="ltr"><br></div><div dir="ltr">My code is as follows (the main change in comparison with the wiki page is in the image declaration after /gate/source/positron/reader/insert):<br></div><div dir="ltr"><br></div><div dir="ltr">/gate/source/addSource positron voxel<br></div><div dir="ltr">#/gate/source/positron/reader/insert interfile<br></div><div dir="ltr">/gate/source/positron/reader/insert image<br></div><div dir="ltr"> <br></div><div dir="ltr">/gate/source/positron/imageReader/translator/insert range <br></div><div dir="ltr">/gate/source/positron/imageReader/rangeTranslator/readTable data/range_source.dat <br></div><div dir="ltr">/gate/source/positron/imageReader/rangeTranslator/describe 1<br></div><div dir="ltr"> <br></div><div dir="ltr"># THE FOLLOWING LINE ALLOWS YOU TO INSERT THE IMAGE DATA USING THE APPROPRIATE EXTENSION FILE<br></div><div dir="ltr">/gate/source/positron/imageReader/readFile data/mouse_200microns_134x501x127.mhd<br></div><div dir="ltr">/gate/source/positron/imageReader/verbose 1<br></div><div dir="ltr">/gate/source/positron/setPosition -13.4 -50.1 -12.7 mm <br></div><div dir="ltr"><br></div><div dir="ltr">/gate/source/positron/gps/particle e+<br></div><div dir="ltr">/gate/source/positron/gps/angtype iso<br></div><div dir="ltr">/gate/source/positron/gps/energytype Arb<br></div><div dir="ltr">#/gate/source/positron/setIntensity 9.673E-01<br></div><div dir="ltr"><br></div><div dir="ltr">/gate/source/positron/gps/histname arb<br></div><div dir="ltr"><br></div><div dir="ltr"># Warning : probability density (or point wise) and not bin values<br></div><div dir="ltr">/gate/source/positron/gps/histpoint 0.0001 1.781E-08<br></div><div dir="ltr">/gate/source/positron/gps/histpoint 0.00011 4.220E-08<br></div><div dir="ltr">Etc etc etc.<br></div><div dir="ltr"><br></div><div dir="ltr">When I run this code, I get no errors, but also no sources. Can anyone see what I’m doing incorrectly?<br></div><div dir="ltr"><br></div><div dir="ltr">Thanks for your help in advance!<br></div><div dir="ltr"><br></div><div dir="ltr">Best,<br></div><div dir="ltr">Niels van der Werf<br></div><div dir="ltr">_______________________________________________<br></div><div dir="ltr">Gate-users mailing list<br></div><div dir="ltr"><a ymailto="mailto:Gate-users@lists.opengatecollaboration.org" href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a><br></div><div dir="ltr"><a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a></div><br><br></div> </div> </div> </div></div></body></html>