[Gate-users] GATE make

TienGarry gjtian at hotmail.com
Wed Dec 17 13:09:50 CET 2008


Hi,

This is my GATE installation information:

gary at polyu-gary:~/GATE4.0/gate_v4.0.0$ source env_gate.sh

The current value of G4INSTALL is: /home/gary/GATE4.0/geant4.9.1.p03/install/src/geant4
The current value of G4VERSION is: 9.1

Launching Geant4 configuration script /home/gary/GATE4.0/geant4.9.1.p03/install/src/geant4/env.sh

On this machine the G4SYSTEM=Linux-g++
On this machine the G4INSTALL=/home/gary/GATE4.0/geant4.9.1.p03/install/src/geant4
On this machine the G4LIB=/home/gary/GATE4.0/geant4.9.1.p03/install/lib/geant4
On this machine the G4LEVELGAMMADATA=/home/gary/GATE4.0/geant4.9.1.p03/data/PhotonEvaporation2.0
On this machine the G4RADIOACTIVEDATA=/home/gary/GATE4.0/geant4.9.1.p03/data/RadioactiveDecay3.2
On this machine the G4LEDATA=/home/gary/GATE4.0/geant4.9.1.p03/data/G4EMLOW5.1
On this machine the G4NEUTRONHPDATA=/home/gary/GATE4.0/geant4.9.1.p03/data/G4NDL3.12
On this machine the G4ABLADATA=/home/gary/GATE4.0/geant4.9.1.p03/data/G4ABLA3.0
On this machine the CLHEP_BASE_DIR=/home/gary/GATE4.0/CLHEP/install
On this machine the CLHEP_INCLUDE_DIR=/home/gary/GATE4.0/CLHEP/install/include
On this machine the CLHEP_LIB_DIR=/home/gary/GATE4.0/CLHEP/install/lib
On this machine the CLHEP_LIB=CLHEP
On this machine the G4VIS_BUILD_RAYTRACERX_DRIVER=1
On this machine the G4VIS_USE_RAYTRACERX=1
On this machine the XMFLAGS=
On this machine the XMLIBS=
On this machine the XMFLAGS=
On this machine the XAWFLAGS=
On this machine the XAWLIBS=
On this machine the G4LIB_BUILD_SHARED=1
On this machine the G4LIB_BUILD_STATIC=1
On this machine the G4LIB_USE_GRANULAR=1
On this machine the G4UI_USE_TCSH=1

LD_LIBRARY_PATH is set to include CLHEP and Geant4 libraries. 

NOTE : verify that the correct path for the CLHEP library
- $CLHEP_BASE_DIR/lib - is included in the $LD_LIBRARY_PATH
variable in your environment, and no other outdated installations
of CLHEP are by chance referenced through $LD_LIBRARY_PATH and
present in your system !


Configuring GATE options

G4WORKDIR set to .
G4TMP set to ./tmp
G4BIN set to ./bin
Data analysis and output features enabled
Ascii data output enabled
Transport and generation of optical photons is enabled
Checking your LD_LIBRARY_PATH variable...
 ==> OK: /home/gary/GATE4.0/root/lib is already in your LD_LIBRARY_PATH
Use of ROOT enabled
ROOT real-time plotter disabled
Checking your LD_LIBRARY_PATH variable...
 ==> OK: /home/gary/GATE4.0/lmf_v3.0/lib is already in your LD_LIBRARY_PATH
LMF data output enabled
ECAT7 data output disabled
GATEHOME is set to /home/gary/GATE4.0/gate_v4.0.0
Checking your path variable...
 ==> OK: /home/gary/GATE4.0/gate_v4.0.0/bin/Linux-g++ is already in your path variable
G4VERSION9 is set: GATE is compatible with the geant4 version 9.1

Done

then I type make, I got the erros:
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateVSystem::ComputeNofSubCrystalsAtLevel(unsigned int, std::vector<bool, std::allocator<bool> >&) const'
/home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `TBufferFile::WriteVersion(TClass const*, bool)'
/home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `TSQLRow::Streamer(TBuffer&)'
/home/gary/GATE4.0/root/lib/libHist.so: undefined reference to `TMath::Nint(double)'
/home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `TBufferFile::ReadObject(TClass const*)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateOscTranslationMove::GateOscTranslationMove(GateVObjectInserter*, G4String const&, CLHEP::Hep3Vector const&, double, double)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateVParameterisedInserter::ConstructOwnPhysicalVolumes(bool)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateVObjectInserter::thePhysicalVolumeNameTag'
/home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `TBufferFile::WriteClones(TClonesArray*, int)'
./tmp/Linux-g++/Gate/libGate.so: undefined reference to `GateSystemComponent::GateSystemComponent(G4String const&, GateSystemComponent*, GateVSystem*)'
/home/gary/GATE4.0/root/lib/libTree.so: undefined reference to `TKey::Create(int, TFile*)'
collect2: ld returned 1 exit status
make: *** [bin/Linux-g++/Gate] Error 1

Pls help me again, last step for GATE!!!
BTW, how I can get ecat7 library.
thx.


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