<div dir="ltr"><div><div><div><br></div> Dear All, I am also new in gate and I successfully downloaded gate-7.2 (I did not install gate 8.0 because I have geant4 version less than 10.3). I went to .../gate-../examples/example_PET and run "Gate PET_Ecat_System.mac" where I saw a display with many tracks, reconstructed in a cylindrical PET geometry.<br>The program output two files: <br><br>1) yourSinogram.S: A ECAT7 sinogram file<br>2) YourPETSimu.root: A ROOT file <br><br></div>Now I would like to see images like we see in hospitals and I searched the web and found that STIR can do it and I installed this software but the STIR-user guide is really long and the STIR utilities in ../bin are a lot and is hard to choose from them, So maybe you can help me to reconstruct and display images from Sinogram and ROOT output files. <br><br></div>Thank you, Rachid<br><br></div><div class="gmail_extra"><br><div class="gmail_quote">On Fri, Apr 21, 2017 at 7:32 PM, Machiel Kolstein <span dir="ltr"><<a href="mailto:mkolstein@ifae.es" target="_blank">mkolstein@ifae.es</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small">Hi Seb again, </div><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small">I just saw the "/gate_v8.0/benchmarks/<wbr>benchPET/" directory. </div><div class="gmail_default" style="font-size:small">I am running the "benchPET.mac" macro now (if I am understanding it correctly it's simulating a source for 240 seconds, so it will take some while, I guess). It seems to run fine, without complaints. </div><div class="gmail_default" style="font-size:small">Then again, none of the macros involved seem to use "ecat7", so maybe that's why? Is there a way to test that "ecat7" is correctly included in the GATE compilation?</div><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small">Cheers, </div><span class="HOEnZb"><font color="#888888"><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small">Machiel</div></font></span></div><div class="HOEnZb"><div class="h5"><div class="gmail_extra"><br><div class="gmail_quote">On Fri, Apr 21, 2017 at 6:09 PM, Machiel Kolstein <span dir="ltr"><<a href="mailto:mkolstein@ifae.es" target="_blank">mkolstein@ifae.es</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small">Hi Seb, </div><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small">I am sorry, I am not sure I understand what you mean. </div><div class="gmail_default" style="font-size:small">Are you saying that with your installation, "Gate macros/Geometry.mac" works?</div><div class="gmail_default" style="font-size:small">What do you mean with "starting with the PET benchmark"? Is that some other exercise?</div><div class="gmail_default" style="font-size:small">My feeling (I might be completely wrong) is that somehow Gate does not recognize the "ecat" command. Is there some easy to check that Gate does recognize "ecat"?</div><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small">Cheers, </div><span class="m_-1601051332084313277HOEnZb"><font color="#888888"><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small">Machiel</div><div class="gmail_default" style="font-size:small"><br></div></font></span></div><div class="m_-1601051332084313277HOEnZb"><div class="m_-1601051332084313277h5"><div class="gmail_extra"><br><div class="gmail_quote">On Fri, Apr 21, 2017 at 5:52 PM, JAN Sebastien <span dir="ltr"><<a href="mailto:sebastien.jan@cea.fr" target="_blank">sebastien.jan@cea.fr</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d">Hi Machiel<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d" lang="EN-US">I just tested this exercise with the V8.0 and it works well…<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d" lang="EN-US">Start with the PET benchmark to be sure that your install is correct.<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d" lang="EN-US"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d" lang="EN-US">Cheers<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d" lang="EN-US">Seb<u></u><u></u></span></p>
<p class="MsoNormal"><a name="m_-1601051332084313277_m_-1436348461504051956_m_-3683814671115228513__MailEndCompose"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1f497d" lang="EN-US"><u></u> <u></u></span></a></p>
<p class="MsoNormal"><b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">De :</span></b><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"> Gate-users [mailto:<a href="mailto:gate-users-bounces@lists.opengatecollaboration.org" target="_blank">gate-users-bounces@lis<wbr>ts.opengatecollaboration.org</a>]
<b>De la part de</b> Machiel Kolstein<br>
<b>Envoyé :</b> vendredi 21 avril 2017 16:59<br>
<b>À :</b> <a href="mailto:gate-users@lists.opengatecollaboration.org" target="_blank">gate-users@lists.opengatecolla<wbr>boration.org</a><br>
<b>Objet :</b> [Gate-users] "gate/ecat/placement/setTransl<wbr>ation" COMMAND NOT FOUND<u></u><u></u></span></p><div><div class="m_-1601051332084313277m_-1436348461504051956h5">
<p class="MsoNormal"><u></u> <u></u></p>
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<p class="MsoNormal">Hi, <u></u><u></u></p>
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<p class="MsoNormal"><u></u> <u></u></p>
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<p class="MsoNormal">I just succesfully installed GATE version 8.0. <u></u><u></u></p>
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<p class="MsoNormal">To learn how to use GATE, I also downloaded an exercise from this page:<u></u><u></u></p>
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<p class="MsoNormal"> <a href="http://www.opengatecollaboration.org/Materials2015/PracticalExercises2015/PET" target="_blank">
http://www.opengatecollaborati<wbr>on.org/Materials2015/Practical<wbr>Exercises2015/PET</a><u></u><u></u></p>
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<p class="MsoNormal"><u></u> <u></u></p>
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<p class="MsoNormal">However, when I try to run "Gate macros/Geometry.mac", I get the following error: <u></u><u></u></p>
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<p class="MsoNormal">[G4-cerr] ***** COMMAND NOT FOUND </gate/ecat/placement/setTrans<wbr>lation 0.0 0.0 0.0 cm> *****<u></u><u></u></p>
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<p class="MsoNormal"><u></u> <u></u></p>
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<p class="MsoNormal">This is even though I installed "ecat7" and did a ccmake on GATE with "GATE_USE_ECAT7" is ON and the "ECAT7_HOME" directory is set.<u></u><u></u></p>
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<p class="MsoNormal"><u></u> <u></u></p>
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<p class="MsoNormal">Cheers, <u></u><u></u></p>
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<p class="MsoNormal"><u></u> <u></u></p>
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<p class="MsoNormal">Machiel<u></u><u></u></p>
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<p class="MsoNormal"><u></u> <u></u></p>
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<p class="MsoNormal"><u></u> <u></u></p>
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<p class="MsoNormal"><u></u> <u></u></p>
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<p class="MsoNormal">-- <u></u><u></u></p>
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<p class="MsoNormal">Avís - Aviso - Legal Notice - (LOPD) - <a href="http://legal.ifae.es" target="_blank">
http://legal.ifae.es</a><u></u><u></u></p>
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<p class="MsoNormal"><br>
<span style="font-size:10.0pt;font-family:"Courier New"" lang="CA">Avís - Aviso - Legal Notice - (LOPD)</span><span style="font-size:10.0pt;font-family:"Arial",sans-serif" lang="CA"> -</span><span style="font-size:10.0pt;font-family:"Courier New"" lang="CA">
</span><span style="font-size:10.0pt;font-family:"Arial",sans-serif" lang="CA"><a href="http://legal.ifae.es/" target="_blank"><span style="font-family:"Courier New"">http://legal.ifae.es</span></a></span><u></u><u></u></p>
</div></div></div>
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</blockquote></div><br><br clear="all"><div><br></div>-- <br><div class="m_-1601051332084313277m_-1436348461504051956gmail_signature" data-smartmail="gmail_signature">Avís - Aviso - Legal Notice - (LOPD) - <a href="http://legal.ifae.es" target="_blank">http://legal.ifae.es</a></div>
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</div></div></blockquote></div><br><br clear="all"><div><br></div>-- <br><div class="m_-1601051332084313277gmail_signature" data-smartmail="gmail_signature">Avís - Aviso - Legal Notice - (LOPD) - <a href="http://legal.ifae.es" target="_blank">http://legal.ifae.es</a></div>
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<br>
<span><font style="font-family:arial,helvetica,sans-serif" size="2"><span lang="ca-ES"><span style="font-family:courier new,monospace">Avís -
Aviso - Legal Notice - (LOPD)</span> -<span style="font-family:courier new,monospace"> </span><a style="font-family:courier new,monospace" href="http://legal.ifae.es/" target="_blank">http://legal.ifae.es</a></span></font></span></div></div><br>______________________________<wbr>_________________<br>
Gate-users mailing list<br>
<a href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.<wbr>opengatecollaboration.org</a><br>
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<div>University Of Tabuk</div><div>P.O. Box 2072</div><div>Tabuk 71451<br>Kingdom Of Saudi Arabia<br>Tel: +966560296632<br> </div></div></div>
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