<html> <head> <meta http-equiv="Content-Type" content="text/html; charset=utf-8"> <meta name="Generator" content="Microsoft Exchange Server">  <style></style> </head> <body> <font face="Consolas" size="2"><span style="font-size:10.5pt;"> <div>Dear David et. al</div> <div>Thanks very much for the time and effort you put in to this issue for us. We do really appreciate that.</div> <div>The following highlighted section addresses all your comments. Please let me know if you need anything else to verify the issue for us. </div> <div>Still having the same issues. What should Geant4_DIR be set to? I can add a CMake parameter manually perhaps?</div> <div> </div> <div><span style="background-color:silver;">Had tried to build Gate_v7.2 with Geant4.10.2 earlier and had the same errors. For my Geant4 only projects I will be using the latest build (10.3). I had mistakenly pasted the output from an attempt to build Gate with the Geant4.10.3 version even though the problem was identical with version 10.2.</span></div> <div> </div> <div><span style="background-color:silver;">I have now built Root5.34/36.</span></div> <div> </div> <div> </div> <div><span style="background-color:silver;">1 ) Here is the result from the environment variable query.</span></div> <div> </div> <div><span style="background-color:silver;">cneeley@maryam-mpre-01:~/Desktop$ printenv | grep -i geant4</span></div> <div><span style="background-color:silver;">G4LEVELGAMMADATA=/home/cneeley/apps/Geant4/Old/Packages10.2/PhotonEvaporation3.2</span></div> <div><span style="background-color:silver;">G4NEUTRONXSDATA=/home/cneeley/apps/Geant4/Old/Packages10.2/G4NEUTRONXS1.4</span></div> <div><span style="background-color:silver;">G4LEDATA=/home/cneeley/apps/Geant4/Old/Packages10.2/G4EMLOW6.48</span></div> <div><span style="background-color:silver;">LD_LIBRARY_PATH=/home/cneeley/apps/Geant4/Old/geant4.10.2-install/lib</span></div> <div><span style="background-color:silver;">G4NEUTRONHPDATA=/home/cneeley/apps/Geant4/Old/Packages10.2/G4NDL4.5</span></div> <div><span style="background-color:silver;">G4ENSDFSTATEDATA=/home/cneeley/apps/Geant4/Old/Packages10.2/G4ENSDFSTATE1.2.3</span></div> <div><span style="background-color:silver;">G4RADIOACTIVEDATA=/home/cneeley/apps/Geant4/Old/Packages10.2/RadioactiveDecay4.3.2</span></div> <div><span style="background-color:silver;">G4ABLADATA=/home/cneeley/apps/Geant4/Old/Packages10.2/G4ABLA3.0</span></div> <div><span style="background-color:silver;">PATH=/home/cneeley/apps/Geant4/Old/geant4.10.2-install/bin:/home/cneeley/bin:/home/cneeley/.local/bin:/home/cneeley/apps/Qt5.8/5.8/gcc_64/bin:/home/cneeley/apps/Geant4/Old/geant4.10.2-install/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin</span></div> <div><span style="background-color:silver;">G4PIIDATA=/home/cneeley/apps/Geant4/Old/Packages10.2/G4PII1.3</span></div> <div><span style="background-color:silver;">G4SAIDXSDATA=/home/cneeley/apps/Geant4/Old/Packages10.2/G4SAIDDATA1.1</span></div> <div><span style="background-color:silver;">G4REALSURFACEDATA=/home/cneeley/apps/Geant4/Old/Packages10.2/RealSurface1.0</span></div> <div> </div> <div><span style="background-color:silver;">2) I built Geant4 from the source</span></div> <div> </div> <div> </div> <div><span style="background-color:silver;">3) </span></div> <div><span style="background-color:silver;">cneeley@maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$ echo $SHELL</span></div> <div><span style="background-color:silver;">/bin/bash</span></div> <div><span style="background-color:silver;">cneeley@maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$ type cmake</span></div> <div><span style="background-color:silver;">cmake is /usr/bin/cmake</span></div> <div><span style="background-color:silver;">cneeley@maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$ cmake --version</span></div> <div><span style="background-color:silver;">cmake version 3.5.1</span></div> <div> </div> <div><span style="background-color:silver;">CMake suite maintained and supported by Kitware (kitware.com/cmake).</span></div> <div><span style="background-color:silver;">cneeley@maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$ grep Geant4_DIR CMakeCache.txt</span></div> <div><span style="background-color:silver;">cneeley@maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$ type geant4-config</span></div> <div><span style="background-color:silver;">geant4-config is /home/cneeley/apps/Geant4/Old/geant4.10.2-install/bin/geant4-config</span></div> <div><span style="background-color:silver;">cneeley@maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$ geant4-config --version</span></div> <div><span style="background-color:silver;">10.2.3</span></div> <div><span style="background-color:silver;">cneeley@maryam-mpre-01:~/apps/Geant4/Old/geant4.10.2-build$ geant4-config --prefix</span></div> <div><span style="background-color:silver;">/home/cneeley/apps/Geant4/Old/geant4.10.2-install/bin/..</span></div> <div> </div> <div> </div> <div><span style="background-color:silver;">The only Geant4_DIR found in the CMakeCache.txt file was:</span></div> <div> </div> <div><span style="background-color:silver;">Geant4_BINARY_DIR:STATIC=/home/cneeley/apps/Geant4/Old/geant4.10.2-build</span></div> <div> </div> <div><span style="background-color:silver;">Geant4_SOURCE_DIR:STATIC=/home/cneeley/apps/Geant4/Old/geant4.10.02.p03</span></div> <div> </div> <div>Yours Sincerely</div> <div>Farshid</div> <div> </div> <div>Farshid Salehzahi (CSci, MIPEM, Clinical Scientist, MACPSEM) </div> <div>Head of Molecular and Nuclear Medicine Physics Section</div> <div>Medical Physics and Radiation Engineering </div> <div>ANU Visiting Fellow</div> <div>Research School of Physics and Engineering, </div> <div>ANU College of Physical and Mathematical Sciences</div> <div> </div> <div> </div> <div>-----Original Message-----<br> From: Gate-users [<a href="mailto:gate-users-bounces@lists.opengatecollaboration.org">mailto:gate-users-bounces@lists.opengatecollaboration.org</a>] On Behalf Of gate-users-request@lists.opengatecollaboration.org<br> Sent: Saturday, 25 February 2017 3:20 AM<br> To: gate-users@lists.opengatecollaboration.org<br> Subject: Gate-users Digest, Vol 129, Issue 41</div> <div> </div> <div>Send Gate-users mailing list submissions to</div> <div> <a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a></div> <div> </div> <div>To subscribe or unsubscribe via the World Wide Web, visit</div> <div> <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a></div> <div>or, via email, send a message with subject or body 'help' to</div> <div> <a href="mailto:gate-users-request@lists.opengatecollaboration.org">gate-users-request@lists.opengatecollaboration.org</a></div> <div> </div> <div>You can reach the person managing the list at</div> <div> <a href="mailto:gate-users-owner@lists.opengatecollaboration.org">gate-users-owner@lists.opengatecollaboration.org</a></div> <div> </div> <div>When replying, please edit your Subject line so it is more specific than "Re: Contents of Gate-users digest..."</div> <div> </div> <div> </div> <div>Today's Topics:</div> <div> </div> <div><font face="Consolas Greek"> 1. Re: Σχετ: Gate-users Digest, Vol 129, Issue 39</font></div> <div> [SEC=UNCLASSIFIED] (David Boersma)</div> <div> 2. Re<font face="Consolas Greek">: Σχετ: Gate-users Digest, Vol 129, Issue 39</font></div> <div> [SEC=UNCLASSIFIED] (David Boersma)</div> <div> </div> <div> </div> <div>----------------------------------------------------------------------</div> <div> </div> <div>Message: 1</div> <div>Date: Fri, 24 Feb 2017 12:36:02 +0100</div> <div>From: David Boersma <<a href="mailto:david.boersma@physics.uu.se">david.boersma@physics.uu.se</a>></div> <div>To: <<a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a>></div> <div><font face="Consolas Greek">Subject: Re: [Gate-users] Σχετ: Gate-users Digest, Vol 129, Issue</font></div> <div> 39 [SEC=UNCLASSIFIED]</div> <div>Message-ID: <<a href="mailto:2616684a-47ec-ce92-4190-fd876a719491@physics.uu.se">2616684a-47ec-ce92-4190-fd876a719491@physics.uu.se</a>></div> <div>Content-Type: text/plain; charset="utf-8"; format=flowed</div> <div> </div> <div>Hi Farshid,</div> <div> </div> <div>Konstantinos is partly right about the incompatible geant4 versions.</div> <div> </div> <div>ROOT 6.* will not compile with Gate 7.2 (for a silly simple reason that is fixed on github, so in the upcoming release you'll be able to use ROOT6).</div> <div> </div> <div>Geant4 10.03 has not been *validated* for gate 7.2 (because geant4 10.03 was released long after gate 7.2 was released), but it should not give you this build error. I just tried it on my own machine and I can compile gate 7.2 just fine with geant4 10.03. So I strongly suspect that after you'll install (the latest patch version of) geant4 10.02 you will run into the same build error.</div> <div> </div> <div>(The rest of this mail I wrote already before Konstantinos wrote to the</div> <div>list...)</div> <div> </div> <div> From those regex errors we can conclude that for some reason cmake does not manage to define the Geant4_VERSION variable. That is strange, because in the first line of the quoted output you show that it does find the installation prefix and it even quotes the version in parentheses. We need to collect more diagnostics, hopefully that will give us a clue.</div> <div> </div> <div>(1) multiple installs?</div> <div> </div> <div>Do you have other geant4 installations on your system besides the one you intend to use, and could you check the output of</div> <div> </div> <div>printenv | grep -i geant4</div> <div> </div> <div>to see if maybe your shell environment somehow has a mixture of multiple versions?</div> <div> </div> <div>(2) install method</div> <div> </div> <div>How did you install geant4? Build from source or unpack a binary tarball?</div> <div> </div> <div>(3) check cmake and geant4-config</div> <div> </div> <div>Could you cd to the *build* directory where you most recently tried to run cmake, and then copy-paste the following commands into you shell, and then copy-paste the resulting output into a mail to the list?</div> <div> </div> <div>echo $SHELL</div> <div>type cmake</div> <div>cmake --version</div> <div>grep Geant4_DIR CMakeCache.txt</div> <div>type geant4-config</div> <div>geant4-config --version</div> <div>geant4-config --prefix</div> <div> </div> <div>Maybe this helps to get a clue to what's going on on your system. If it doesn't then I can try to come up with some more diagnostic tests...</div> <div> </div> <div>Good luck,</div> <div>David</div> <div> </div> <div> </div> <div>Den 24/02/2017 kl. 11:40, skrev Konstantinos P. Chatzipapas, MSc:</div> <div>> Hello,</div> <div>></div> <div>> I see that you have install Geant4 V10.3.0 and Root V6.08/02 that </div> <div>> doesn't work for GATE V7.2.</div> <div>> You must install Geant4 V10.02.p03 and Root V5.34/36, so that GATE </div> <div>> V7.2 would work.</div> <div>></div> <div>> Kind Regards,</div> <div>> Konstantinos</div> <div>></div> <div>> -----------------------------------------------------</div> <div>> Konstantinos Chatzipapas</div> <div>> Medical Physicist, MSc</div> <div>> University of Patras</div> <div>></div> <div>> web page: Physics Magazine <<a href="http://www.physicsmag.com/">http://www.physicsmag.com/</a>></div> <div>></div> <div>></div> <div><font face="Consolas Greek">> Στις 7:19 π.μ. Παρασκευή, 24 Φεβρουαρίου 2017, ο/η "Salehzahi, Farshid </font></div> <div>> (Health)" <<a href="mailto:Farshid.Salehzahi@act.gov.au">Farshid.Salehzahi@act.gov.au</a><font face="Consolas Greek">> έγραψε:</font></div> <div>></div> <div>></div> <div>> Hi Konstantinos</div> <div>></div> <div>> Thanks for taking the time to support.</div> <div>> I can confirm that source geant4.sh is in our bashrc.</div> <div>> I can also confirm that we ran GEANT4 example, which was completed </div> <div>> smoothly indicating the GEANT4 us running trouble-free. :)</div> <div>></div> <div>> I have copied the text below from the terminal, which shows the errors </div> <div>> we are facing for your further analysis and possible advice please.</div> <div>></div> <div>> Below is the output from CMake specifying the errors encountered.</div> <div>></div> <div>> Found Geant4: /home/cneeley/apps/Geant4/geant4.10.3-install/bin/.. </div> <div>> (10.3.0) CMake Error at CMakeLists.txt:67 (STRING):</div> <div>> string sub-command REGEX, mode REPLACE needs at least 6 arguments total to</div> <div>> command.</div> <div>></div> <div>></div> <div>> CMake Error at CMakeLists.txt:68 (STRING):</div> <div>> string sub-command REGEX, mode REPLACE needs at least 6 arguments total to</div> <div>> command.</div> <div>></div> <div>></div> <div>> CMake Error at CMakeLists.txt:69 (STRING):</div> <div>> string sub-command REGEX, mode REPLACE needs at least 6 arguments total to</div> <div>> command.</div> <div>></div> <div>></div> <div>> Warning! GATE version 7.2 is not validated for Geant4 . distribution.</div> <div>> Please use Geant4 10.1 or 10.2 distribution instead.</div> <div>> Found ROOT 6.08/02 in /home/cneeley/apps/Root/root6.08 CMake Error at </div> <div>> CMakeLists.txt:173 (INCLUDE):</div> <div>> include called with wrong number of arguments. include() only takes one</div> <div>> file.</div> <div>></div> <div>></div> <div>> CMake Error at CMakeLists.txt:175 (INCLUDE):</div> <div>> include could not find load file:</div> <div>></div> <div>> /home/cneeley/apps/GATE/gate_v7.2/source/general/include</div> <div>></div> <div>> Yours Sincerely</div> <div>> Farshid</div> <div>></div> <div>> Farshid Salehzahi (CSci, MIPEM, Clinical Scientist, MACPSEM) Head of </div> <div>> Molecular and Nuclear Medicine Physics Section Medical Physics and </div> <div>> Radiation Engineering ANU Visiting Fellow Research School of Physics </div> <div>> and Engineering, ANU College of Physical and Mathematical Sciences</div> <div>></div> <div>> TCH Phone: 6244 4091 | Fax: 6244 2977</div> <div>> |mailto:Farshid.Salehzahi@act.gov.au </div> <div>> |<<a href="mailto:Farshid.Salehzahi@act.gov.au">mailto:Farshid.Salehzahi@act.gov.au</a>></div> <div>> Clinical Support Services</div> <div>> Canberra Hospital and Health Services</div> <div>></div> <div>></div> <div>> -----Original Message-----</div> <div>> From: Gate-users</div> <div>> [<a href=""></a>mailto:gate-users-bounces@lists.opengatecollaboration.org</div> <div>> <<a href="mailto:gate-users-bounces@lists.opengatecollaboration.org">mailto:gate-users-bounces@lists.opengatecollaboration.org</a>>] On Behalf </div> <div>> Of <a href="mailto:gate-users-request@lists.opengatecollaboration.org">gate-users-request@lists.opengatecollaboration.org</a></div> <div>> <<a href="mailto:gate-users-request@lists.opengatecollaboration.org">mailto:gate-users-request@lists.opengatecollaboration.org</a>></div> <div>> Sent: Thursday, 23 February 2017 7:53 PM</div> <div>> To: <a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a></div> <div>> <<a href="mailto:gate-users@lists.opengatecollaboration.org">mailto:gate-users@lists.opengatecollaboration.org</a>></div> <div>> Subject: Gate-users Digest, Vol 129, Issue 39</div> <div>></div> <div>> Send Gate-users mailing list submissions to</div> <div>> <a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a></div> <div>> <<a href="mailto:gate-users@lists.opengatecollaboration.org">mailto:gate-users@lists.opengatecollaboration.org</a>></div> <div>></div> <div>> To subscribe or unsubscribe via the World Wide Web, visit</div> <div>> <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a></div> <div>> or, via email, send a message with subject or body 'help' to</div> <div>> <a href="mailto:gate-users-request@lists.opengatecollaboration.org">gate-users-request@lists.opengatecollaboration.org</a></div> <div>> <<a href="mailto:gate-users-request@lists.opengatecollaboration.org">mailto:gate-users-request@lists.opengatecollaboration.org</a>></div> <div>></div> <div>> You can reach the person managing the list at</div> <div>> <a href="mailto:gate-users-owner@lists.opengatecollaboration.org">gate-users-owner@lists.opengatecollaboration.org</a></div> <div>> <<a href="mailto:gate-users-owner@lists.opengatecollaboration.org">mailto:gate-users-owner@lists.opengatecollaboration.org</a>></div> <div>></div> <div>> When replying, please edit your Subject line so it is more specific </div> <div>> than</div> <div>> "Re: Contents of Gate-users digest..."</div> <div>></div> <div>></div> <div>> Today's Topics:</div> <div>></div> <div><font face="Consolas Greek">> 1. Σχετ: GATE Installation Problem [SEC=UNCLASSIFIED]</font></div> <div>> (Konstantinos P. Chatzipapas, MSc)</div> <div>></div> <div>></div> <div>> ----------------------------------------------------------------------</div> <div>></div> <div>> Message: 1</div> <div>> Date: Thu, 23 Feb 2017 08:52:40 +0000 (UTC)</div> <div>> From: "Konstantinos P. Chatzipapas, MSc" <konhat88@yahoo.gr </div> <div>> <<a href="mailto:konhat88@yahoo.gr">mailto:konhat88@yahoo.gr</a>>></div> <div>> To: "Salehzahi, Farshid (Health)" <Farshid.Salehzahi@act.gov.au </div> <div>> <<a href="mailto:Farshid.Salehzahi@act.gov.au">mailto:Farshid.Salehzahi@act.gov.au</a>>>,</div> <div>> "gate-users@lists.opengatecollaboration.org</div> <div>> <<a href="mailto:gate-users@lists.opengatecollaboration.org">mailto:gate-users@lists.opengatecollaboration.org</a>>"</div> <div>> <gate-users@lists.opengatecollaboration.org</div> <div>> <<a href="mailto:gate-users@lists.opengatecollaboration.org">mailto:gate-users@lists.opengatecollaboration.org</a>>></div> <div><font face="Consolas Greek">> Subject: [Gate-users] Σχετ: GATE Installation Pr<font face="Consolas">oblem</font></font></div> <div>> [SEC=UNCLASSIFIED]</div> <div>> Message-ID: <1484310233.5675768.1487839960381@mail.yahoo.com</div> <div>> <<a href="mailto:1484310233.5675768.1487839960381@mail.yahoo.com">mailto:1484310233.5675768.1487839960381@mail.yahoo.com</a>>></div> <div>> Content-Type: text/plain; charset="utf-8"</div> <div>></div> <div>> Hello,</div> <div>> Have source your geant4.sh in your bashrc??</div> <div>> Best Regards,Konstantinos</div> <div>> ----------------------------------------------------- Konstantinos </div> <div>> Chatzipapas</div> <div>> Medical Physicist, MSc</div> <div>> University of Patras</div> <div>> web page: Physics Magazine</div> <div>></div> <div><font face="Consolas Greek">> Στις 5:44 π.μ. Παρασκευή, 17 Φεβρουαρίου 2017, ο/η "Salehzahi, </font></div> <div>> Farshid (Health)" <Farshid.Salehzahi@act.gov.au </div> <div>> <<a href="mailto:Farshid.Salehzahi@act.gov.au">mailto:Farshid.Salehzahi@act.gov.au</a><font face="Consolas Greek">>> έγραψε:</font></div> <div>></div> <div>></div> <div>> Hello GATE-Users, One of my</div> <div>> colleagues is trying to set up GATE_v7.2 (Geant4-10.2.3, Qt5.8) on an </div> <div>> Ubuntu server. The Geant4 built successfully. The problem is that the </div> <div>> GATE CMakeList.txt file tries to initiailise the Geant4_USE_FILE </div> <div>> parameter. The Geant4_USE_FILE is not set correctly and he would like to</div> <div>> know what file/variable etc this is trying to point to? I would</div> <div>> really appreciate your prompt response to this matter as we are looking</div> <div>> forward to using GATE’s applications. Yours Sincerely, Farshid</div> <div>> Farshid Salehzahi (CSci, MIPEM, Clinical Scientist, MACPSEM) Head of </div> <div>> Molecular and Nuclear Medicine Physics Section Medical Physics and </div> <div>> Radiation Engineering ANU Visiting Fellow Research School of Physics </div> <div>> and Engineering, ANU College of Physical and Mathematical Sciences TCH</div> <div>> Phone: 6244 4091 | Fax: 6244 2977 |mailto:Farshid.Salehzahi@act.gov.au</div> <div>> <<a href="mailto:Farshid.Salehzahi@act.gov.au">mailto:Farshid.Salehzahi@act.gov.au</a>> Clinical Support Services </div> <div>> Canberra Hospital and Health Services We acknowledge the traditional </div> <div>> custodians of the ACT, the Ngunnawal people. We acknowledge and </div> <div>> respect their continuing culture and the contribution they make to the </div> <div>> life of this city and this region.</div> <div>> </div> <div>> ----------------------------------------------------------------------</div> <div>> - This email, and any attachments, may be confidential and also </div> <div>> privileged. If you are not the intended recipient, please notify the </div> <div>> sender and delete all copies of this transmission along with any </div> <div>> attachments immediately. 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Oops. I wrote:</div> <div> </div> <div> > I just tried it on my own machine and I can > compile gate 7.2 just fine with geant4 10.03.</div> <div> </div> <div>That is not correct.</div> <div> </div> <div>The cmake stage goes fine and the compile happily proceeds through about 70% of the build but then actually fails for multiple reasons (CLHEP namespace for units, and 'theParticleIterator' is no longer #defined).</div> <div> </div> <div>You can *not* compile Gate v7.2 with geant4 version 10.03.</div> <div> </div> <div>My apologies for any confusion that my wrong statement may have caused, David Boersma</div> <div> </div> <div>Den 24/02/2017 kl. 12:36, skrev David Boersma:</div> <div>> Hi Farshid,</div> <div>></div> <div>> Konstantinos is partly right about the incompatible geant4 versions.</div> <div>></div> <div>> ROOT 6.* will not compile with Gate 7.2 (for a silly simple reason </div> <div>> that is fixed on github, so in the upcoming release you'll be able to </div> <div>> use ROOT6).</div> <div>></div> <div>> Geant4 10.03 has not been *validated* for gate 7.2 (because geant4 </div> <div>> 10.03 was released long after gate 7.2 was released), but it should </div> <div>> not give you this build error. I just tried it on my own machine and I </div> <div>> can compile gate 7.2 just fine with geant4 10.03. So I strongly </div> <div>> suspect that after you'll install (the latest patch version of) geant4 </div> <div>> 10.02 you will run into the same build error.</div> <div>></div> <div>> (The rest of this mail I wrote already before Konstantinos wrote to </div> <div>> the</div> <div>> list...)</div> <div>></div> <div>> From those regex errors we can conclude that for some reason cmake </div> <div>> does not manage to define the Geant4_VERSION variable. That is </div> <div>> strange, because in the first line of the quoted output you show that </div> <div>> it does find the installation prefix and it even quotes the version in </div> <div>> parentheses. We need to collect more diagnostics, hopefully that will </div> <div>> give us a clue.</div> <div>></div> <div>> (1) multiple installs?</div> <div>></div> <div>> Do you have other geant4 installations on your system besides the one </div> <div>> you intend to use, and could you check the output of</div> <div>></div> <div>> printenv | grep -i geant4</div> <div>></div> <div>> to see if maybe your shell environment somehow has a mixture of </div> <div>> multiple versions?</div> <div>></div> <div>> (2) install method</div> <div>></div> <div>> How did you install geant4? Build from source or unpack a binary tarball?</div> <div>></div> <div>> (3) check cmake and geant4-config</div> <div>></div> <div>> Could you cd to the *build* directory where you most recently tried to </div> <div>> run cmake, and then copy-paste the following commands into you shell, </div> <div>> and then copy-paste the resulting output into a mail to the list?</div> <div>></div> <div>> echo $SHELL</div> <div>> type cmake</div> <div>> cmake --version</div> <div>> grep Geant4_DIR CMakeCache.txt</div> <div>> type geant4-config</div> <div>> geant4-config --version</div> <div>> geant4-config --prefix</div> <div>></div> <div>> Maybe this helps to get a clue to what's going on on your system. If </div> <div>> it doesn't then I can try to come up with some more diagnostic tests...</div> <div>></div> <div>> Good luck,</div> <div>> David</div> <div>></div> <div>></div> <div>> Den 24/02/2017 kl. 11:40, skrev Konstantinos P. Chatzipapas, MSc:</div> <div>>> Hello,</div> <div>>></div> <div>>> I see that you have install Geant4 V10.3.0 and Root V6.08/02 that </div> <div>>> doesn't work for GATE V7.2.</div> <div>>> You must install Geant4 V10.02.p03 and Root V5.34/36, so that GATE </div> <div>>> V7.2 would work.</div> <div>>></div> <div>>> Kind Regards,</div> <div>>> Konstantinos</div> <div>>></div> <div>>> -----------------------------------------------------</div> <div>>> Konstantinos Chatzipapas</div> <div>>> Medical Physicist, MSc</div> <div>>> University of Patras</div> <div>>></div> <div>>> web page: Physics Magazine <<a href="http://www.physicsmag.com/">http://www.physicsmag.com/</a>></div> <div>>></div> <div>>></div> <div><font face="Consolas Greek">>> Στις 7:19 π.μ. Παρασκευή, 24 Φεβρουαρίου 2017, ο/η "Salehzahi, </font></div> <div>>> Farshid (Health)" <<a href="mailto:Farshid.Salehzahi@act.gov.au">Farshid.Salehzahi@act.gov.au</a><font face="Consolas Greek">> έγραψε:</font></div> <div>>></div> <div>>></div> <div>>> Hi Konstantinos</div> <div>>></div> <div>>> Thanks for taking the time to support.</div> <div>>> I can confirm that source geant4.sh is in our bashrc.</div> <div>>> I can also confirm that we ran GEANT4 example, which was completed </div> <div>>> smoothly indicating the GEANT4 us running trouble-free. :)</div> <div>>></div> <div>>> I have copied the text below from the terminal, which shows the </div> <div>>> errors we are facing for your further analysis and possible advice please.</div> <div>>></div> <div>>> Below is the output from CMake specifying the errors encountered.</div> <div>>></div> <div>>> Found Geant4: /home/cneeley/apps/Geant4/geant4.10.3-install/bin/..</div> <div>>> (10.3.0)</div> <div>>> CMake Error at CMakeLists.txt:67 (STRING):</div> <div>>> string sub-command REGEX, mode REPLACE needs at least 6 arguments </div> <div>>> total to</div> <div>>> command.</div> <div>>></div> <div>>></div> <div>>> CMake Error at CMakeLists.txt:68 (STRING):</div> <div>>> string sub-command REGEX, mode REPLACE needs at least 6 arguments </div> <div>>> total to</div> <div>>> command.</div> <div>>></div> <div>>></div> <div>>> CMake Error at CMakeLists.txt:69 (STRING):</div> <div>>> string sub-command REGEX, mode REPLACE needs at least 6 arguments </div> <div>>> total to</div> <div>>> command.</div> <div>>></div> <div>>></div> <div>>> Warning! GATE version 7.2 is not validated for Geant4 . distribution.</div> <div>>> Please use Geant4 10.1 or 10.2 distribution instead.</div> <div>>> Found ROOT 6.08/02 in /home/cneeley/apps/Root/root6.08 CMake Error at </div> <div>>> CMakeLists.txt:173 (INCLUDE):</div> <div>>> include called with wrong number of arguments. include() only </div> <div>>> takes one</div> <div>>> file.</div> <div>>></div> <div>>></div> <div>>> CMake Error at CMakeLists.txt:175 (INCLUDE):</div> <div>>> include could not find load file:</div> <div>>></div> <div>>> /home/cneeley/apps/GATE/gate_v7.2/source/general/include</div> <div>>></div> <div>>> Yours Sincerely</div> <div>>> Farshid</div> <div>>></div> <div>>> Farshid Salehzahi (CSci, MIPEM, Clinical Scientist, MACPSEM) Head of </div> <div>>> Molecular and Nuclear Medicine Physics Section Medical Physics and </div> <div>>> Radiation Engineering ANU Visiting Fellow Research School of Physics </div> <div>>> and Engineering, ANU College of Physical and Mathematical Sciences</div> <div>>></div> <div>>> TCH Phone: 6244 4091 | Fax: 6244 2977</div> <div>>> |mailto:Farshid.Salehzahi@act.gov.au</div> <div>>> <<a href="mailto:Farshid.Salehzahi@act.gov.au">mailto:Farshid.Salehzahi@act.gov.au</a>></div> <div>>> Clinical Support Services</div> <div>>> Canberra Hospital and Health Services</div> <div>>></div> <div>>></div> <div>>> -----Original Message-----</div> <div>>> From: Gate-users</div> <div>>> [<a href=""></a>mailto:gate-users-bounces@lists.opengatecollaboration.org</div> <div>>> <<a href="mailto:gate-users-bounces@lists.opengatecollaboration.org">mailto:gate-users-bounces@lists.opengatecollaboration.org</a>>] On </div> <div>>> Behalf Of <a href="mailto:gate-users-request@lists.opengatecollaboration.org">gate-users-request@lists.opengatecollaboration.org</a></div> <div>>> <<a href="mailto:gate-users-request@lists.opengatecollaboration.org">mailto:gate-users-request@lists.opengatecollaboration.org</a>></div> <div>>> Sent: Thursday, 23 February 2017 7:53 PM</div> <div>>> To: <a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a></div> <div>>> <<a href="mailto:gate-users@lists.opengatecollaboration.org">mailto:gate-users@lists.opengatecollaboration.org</a>></div> <div>>> Subject: Gate-users Digest, Vol 129, Issue 39</div> <div>>></div> <div>>> Send Gate-users mailing list submissions to</div> <div>>> <a href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a></div> <div>>> <<a href="mailto:gate-users@lists.opengatecollaboration.org">mailto:gate-users@lists.opengatecollaboration.org</a>></div> <div>>></div> <div>>> To subscribe or unsubscribe via the World Wide Web, visit</div> <div>>> </div> <div>>> <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a></div> <div>>> or, via email, send a message with subject or body 'help' to</div> <div>>> <a href="mailto:gate-users-request@lists.opengatecollaboration.org">gate-users-request@lists.opengatecollaboration.org</a></div> <div>>> <<a href="mailto:gate-users-request@lists.opengatecollaboration.org">mailto:gate-users-request@lists.opengatecollaboration.org</a>></div> <div>>></div> <div>>> You can reach the person managing the list at</div> <div>>> <a href="mailto:gate-users-owner@lists.opengatecollaboration.org">gate-users-owner@lists.opengatecollaboration.org</a></div> <div>>> <<a href="mailto:gate-users-owner@lists.opengatecollaboration.org">mailto:gate-users-owner@lists.opengatecollaboration.org</a>></div> <div>>></div> <div>>> When replying, please edit your Subject line so it is more specific </div> <div>>> than</div> <div>>> "Re: Contents of Gate-users digest..."</div> <div>>></div> <div>>></div> <div>>> Today's Topics:</div> <div>>></div> <div><font face="Consolas Greek">>> 1. Σχετ: GATE Installation Problem [SEC=UNCLASSIFIED]</font></div> <div>>> (Konstantinos P. Chatzipapas, MSc)</div> <div>>></div> <div>>></div> <div>>> ---------------------------------------------------------------------</div> <div>>> -</div> <div>>></div> <div>>> Message: 1</div> <div>>> Date: Thu, 23 Feb 2017 08:52:40 +0000 (UTC)</div> <div>>> From: "Konstantinos P. Chatzipapas, MSc" <konhat88@yahoo.gr </div> <div>>> <<a href="mailto:konhat88@yahoo.gr">mailto:konhat88@yahoo.gr</a>>></div> <div>>> To: "Salehzahi, Farshid (Health)" <Farshid.Salehzahi@act.gov.au </div> <div>>> <<a href="mailto:Farshid.Salehzahi@act.gov.au">mailto:Farshid.Salehzahi@act.gov.au</a>>>,</div> <div>>> "gate-users@lists.opengatecollaboration.org</div> <div>>> <<a href="mailto:gate-users@lists.opengatecollaboration.org">mailto:gate-users@lists.opengatecollaboration.org</a>>"</div> <div>>> <gate-users@lists.opengatecollaboration.org</div> <div>>> <<a href="mailto:gate-users@lists.opengatecollaboration.org">mailto:gate-users@lists.opengatecollaboration.org</a>>></div> <div><font face="Consolas Greek">>> Subject: [Gate-users] Σχετ: GATE Installation Problem</font></div> <div>>> [SEC=UNCLASSIFIED]</div> <div>>> Message-ID: <1484310233.5675768.1487839960381@mail.yahoo.com</div> <div>>> <<a href="mailto:1484310233.5675768.1487839960381@mail.yahoo.com">mailto:1484310233.5675768.1487839960381@mail.yahoo.com</a>>></div> <div>>> Content-Type: text/plain; charset="utf-8"</div> <div>>></div> <div>>> Hello,</div> <div>>> Have source your geant4.sh in your bashrc??</div> <div>>> Best Regards,Konstantinos</div> <div>>> ----------------------------------------------------- Konstantinos </div> <div>>> Chatzipapas</div> <div>>> Medical Physicist, MSc</div> <div>>> University of Patras</div> <div>>> web page: Physics Magazine</div> <div>>></div> <div><font face="Consolas Greek">>> Στις 5:44 π.μ. Παρασκευή, 17 Φεβρουαρίου 2017, ο/η "Salehzahi, </font></div> <div>>> Farshid (Health)" <Farshid.Salehzahi@act.gov.au </div> <div>>> <<a href="mailto:Farshid.Salehzahi@act.gov.au">mailto:Farshid.Salehzahi@act.gov.au</a><font face="Consolas Greek">>> έγραψε:</font></div> <div>>></div> <div>>></div> <div>>> Hello GATE-Users, One of my</div> <div>>> colleagues is trying to set up GATE_v7.2 (Geant4-10.2.3, Qt5.8) on an </div> <div>>> Ubuntu server. The Geant4 built successfully. The problem is that the </div> <div>>> GATE CMakeList.txt file tries to initiailise the Geant4_USE_FILE </div> <div>>> parameter. The Geant4_USE_FILE is not set correctly and he would like to</div> <div>>> know what file/variable etc this is trying to point to? I would</div> <div>>> really appreciate your prompt response to this matter as we are looking</div> <div>>> forward to using GATE’s applications. Yours Sincerely, Farshid</div> <div>>> Farshid Salehzahi (CSci, MIPEM, Clinical Scientist, MACPSEM) Head of </div> <div>>> Molecular and Nuclear Medicine Physics Section Medical Physics and </div> <div>>> Radiation Engineering ANU Visiting Fellow Research School of Physics </div> <div>>> and Engineering, ANU College of Physical and Mathematical Sciences </div> <div>>> TCH</div> <div>>> Phone: 6244 4091 | Fax: 6244 2977 </div> <div>>> |mailto:Farshid.Salehzahi@act.gov.au</div> <div>>> <<a href="mailto:Farshid.Salehzahi@act.gov.au">mailto:Farshid.Salehzahi@act.gov.au</a>> Clinical Support Services </div> <div>>> Canberra Hospital and Health Services We acknowledge the traditional </div> <div>>> custodians of the ACT, the Ngunnawal people. We acknowledge and </div> <div>>> respect their continuing culture and the contribution they make to </div> <div>>> the life of this city and this region.</div> <div>>></div> <div>>> ---------------------------------------------------------------------</div> <div>>> -- This email, and any attachments, may be confidential and also </div> <div>>> privileged. If you are not the intended recipient, please notify the </div> <div>>> sender and delete all copies of this transmission along with any </div> <div>>> attachments immediately. You should not copy or use it for any </div> <div>>> purpose, nor disclose its contents to any other person.</div> <div>>> ---------------------------------------------------------------------</div> <div>>> -- _______________________________________________</div> <div>>> Gate-users mailing list</div> <div>>> <a href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a></div> <div>>> <<a href="mailto:Gate-users@lists.opengatecollaboration.org">mailto:Gate-users@lists.opengatecollaboration.org</a>></div> <div>>> <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a></div> <div>>></div> <div>>></div> <div>>> -------------- next part -------------- An HTML attachment was </div> <div>>> scrubbed...</div> <div>>> URL:</div> <div>>> <<a href=""></a>http://lists.opengatecollaboration.org/mailman/private/gate-users/at</div> <div>>> tachments/20170223/4ed4fbbd/attachment.html></div> <div>>></div> <div>>> -------------- next part -------------- A non-text attachment was </div> <div>>> scrubbed...</div> <div>>> Name: image001.jpg</div> <div>>> Type: image/jpeg</div> <div>>> Size: 4912 bytes</div> <div>>> Desc: not available</div> <div>>> URL:</div> <div>>> <<a href=""></a>http://lists.opengatecollaboration.org/mailman/private/gate-users/at</div> <div>>> tachments/20170223/4ed4fbbd/attachment.jpg></div> <div>>></div> <div>>> -------------- next part -------------- A non-text attachment was </div> <div>>> scrubbed...</div> <div>>> Name: image002.png</div> <div>>> Type: image/png</div> <div>>> Size: 2353 bytes</div> <div>>> Desc: not available</div> <div>>> URL:</div> <div>>> <<a href=""></a>http://lists.opengatecollaboration.org/mailman/private/gate-users/at</div> <div>>> tachments/20170223/4ed4fbbd/attachment.png></div> <div>>></div> <div>>> -------------- next part -------------- A non-text attachment was </div> <div>>> scrubbed...</div> <div>>> Name: image003.png</div> <div>>> Type: image/png</div> <div>>> Size: 2784 bytes</div> <div>>> Desc: not available</div> <div>>> URL:</div> <div>>> <<a href=""></a>http://lists.opengatecollaboration.org/mailman/private/gate-users/at</div> <div>>> tachments/20170223/4ed4fbbd/attachment-0001.png></div> <div>>></div> <div>>></div> <div>>> ------------------------------</div> <div>>></div> <div>>> Subject: Digest Footer</div> <div>>></div> <div>>> _______________________________________________</div> <div>>> Gate-users mailing list</div> <div>>> <a href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a></div> <div>>> <<a href="mailto:Gate-users@lists.opengatecollaboration.org">mailto:Gate-users@lists.opengatecollaboration.org</a>></div> <div>>> <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a></div> <div>>></div> <div>>> ------------------------------</div> <div>>></div> <div>>> End of Gate-users Digest, Vol 129, Issue 39</div> <div>>> *******************************************</div> <div>>></div> <div>>></div> <div>>></div> <div>>></div> <div>>> _______________________________________________</div> <div>>> Gate-users mailing list</div> <div>>> <a href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a></div> <div>>> <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a></div> <div>>></div> <div>> _______________________________________________</div> <div>> Gate-users mailing list</div> <div>> <a href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a></div> <div>> <a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a></div> <div> </div> <div> </div> <div>------------------------------</div> <div> </div> <div>Subject: Digest Footer</div> <div> </div> <div>_______________________________________________</div> <div>Gate-users mailing list</div> <div><a href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a></div> <div><a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a></div> <div> </div> <div>------------------------------</div> <div> </div> <div>End of Gate-users Digest, Vol 129, Issue 41</div> <div>*******************************************</div> <div> </div> <div><font face="Times New Roman" size="3"><span style="font-size:12pt;">-----------------------------------------------------------------------<br> This email, and any attachments, may be confidential and also privileged. 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