<html><head></head><body><div style="color:#000; background-color:#fff; font-family:Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;font-size:16px"><div id="yui_3_16_0_ym19_1_1487800492436_4814"><span id="yui_3_16_0_ym19_1_1487800492436_8317">Hello,</span></div><div id="yui_3_16_0_ym19_1_1487800492436_4849"><span id="yui_3_16_0_ym19_1_1487800492436_5026">There are a lot of files to check, but try changing your patient.mac code using something similar to:</span></div><div id="yui_3_16_0_ym19_1_1487800492436_5068" dir="ltr"><span id="yui_3_16_0_ym19_1_1487800492436_5093"><br></span></div><div dir="ltr" id="yui_3_16_0_ym19_1_1487800492436_10014"><span id="yui_3_16_0_ym19_1_1487800492436_5093">/gate/world/daughters/name patient<br id="yui_3_16_0_ym19_1_1487800492436_5087">/gate/world/daughters/insert ImageNestedParametrisedVolume<br id="yui_3_16_0_ym19_1_1487800492436_5088">/gate/geometry/setMaterialDatabase data/patient-HUmaterials.db<br id="yui_3_16_0_ym19_1_1487800492436_5089">/gate/patient/geometry/SetHUToMaterialFile data/patient-HU2mat.txt<br id="yui_3_16_0_ym19_1_1487800492436_5090">/gate/patient/geometry/SetImage data/patient-2mm.mhd<br id="yui_3_16_0_ym19_1_1487800492436_5091">/gate/patient/placement/setTranslation 0 0 0 mm<br id="yui_3_16_0_ym19_1_1487800492436_5092"></span></div><div dir="ltr" id="yui_3_16_0_ym19_1_1487800492436_11618"><span id="yui_3_16_0_ym19_1_1487800492436_5093"><br></span></div><div dir="ltr" id="yui_3_16_0_ym19_1_1487800492436_11621"><span id="yui_3_16_0_ym19_1_1487800492436_5093">Changing your image to .mhd and ImageNestedParametrisedVolume is the only way to run CT on GATE with GPU, I think.<br></span></div><div dir="ltr" id="yui_3_16_0_ym19_1_1487800492436_11651"><span id="yui_3_16_0_ym19_1_1487800492436_5093"><br></span></div><div dir="ltr" id="yui_3_16_0_ym19_1_1487800492436_11652"><span id="yui_3_16_0_ym19_1_1487800492436_5093"><br></span></div><div dir="ltr" id="yui_3_16_0_ym19_1_1487800492436_13527"><span id="yui_3_16_0_ym19_1_1487800492436_5093">Best Regards,</span></div><div dir="ltr" id="yui_3_16_0_ym19_1_1487800492436_13603"><span id="yui_3_16_0_ym19_1_1487800492436_5093">Konstantinos<br></span></div><div id="yui_3_16_0_ym19_1_1487800492436_5029"><span></span></div><div id="yui_3_16_0_ym19_1_1487800492436_4807"> </div><div class="signature" id="yui_3_16_0_ym19_1_1487800492436_4808"><div id="yui_3_16_0_ym19_1_1487800492436_5030"><span style="font-style:italic;" id="yui_3_16_0_ym19_1_1487800492436_13515">-----------------------------------</span></div><span style="font-style:italic;" id="yui_3_16_0_ym19_1_1487800492436_13516">Konstantinos Chatzipapas<br>Medical Physicist, </span><span style="font-style:italic;">MSc<br></span><div id="yui_3_16_0_ym19_1_1487800492436_13371"><div id="yui_3_16_0_ym19_1_1487800492436_13370"><span style="font-style:italic;" id="yui_3_16_0_ym19_1_1487800492436_13519">University of Patras</span></div><div id="yui_3_16_0_ym19_1_1487800492436_13522"><br><div id="yui_3_16_0_ym19_1_1487800492436_13521"><span style="font-style:italic;" id="yui_3_16_0_ym19_1_1487800492436_13520">web page: www.physicsmag.com</span></div></div></div></div> <div class="qtdSeparateBR"><br><br></div><div class="yahoo_quoted" style="display: block;"> <div style="font-family: Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif; font-size: 16px;"> <div style="font-family: HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif; font-size: 16px;"> <div dir="ltr"><font size="2" face="Arial"> Στις 1:44 μ.μ. Τετάρτη, 22 Φεβρουαρίου 2017, ο/η Wonjoong Cheon <wonjoongcheon@gmail.com> έγραψε:<br></font></div> <br><br> <div class="y_msg_container"><div id="yiv5358075506"><div dir="ltr"><div class="yiv5358075506gmail_default" style="font-family:gulim, sans-serif;">Dear All user of OpenGate. </div><div class="yiv5358075506gmail_default" style="font-family:gulim, sans-serif;"><br></div><div class="yiv5358075506gmail_default" style="font-family:gulim, sans-serif;">My name is Wonjoong Jason Cheon, and I am a graduate school student in South Korea. </div><div class="yiv5358075506gmail_default" style="font-family:gulim, sans-serif;"><br></div><div class="yiv5358075506gmail_default" style="font-family:gulim, sans-serif;">I wrote a code for Cone-Beam CT Simulation with DICOM </div><div class="yiv5358075506gmail_default" style="font-family:gulim, sans-serif;"><br></div><div class="yiv5358075506gmail_default" style="font-family:gulim, sans-serif;">1. CBCT code was written from example_CT </div><div class="yiv5358075506gmail_default" style="font-family:gulim, sans-serif;">2. Import the dicom files which is converted h33, i33 (interfile format)</div><div class="yiv5358075506gmail_default" style="font-family:gulim, sans-serif;"><br></div><div class="yiv5358075506gmail_default"><font face="gulim, sans-serif"><a rel="nofollow" target="_blank" href="https://github.com/wjcheon/CBCT_Gate_GPU">https://github.com/wjcheon/CBCT_Gate_GPU</a></font><br></div><div class="yiv5358075506gmail_default"><font face="gulim, sans-serif"><br></font></div><div class="yiv5358075506gmail_default"><font face="gulim, sans-serif"><br></font></div><div class="yiv5358075506gmail_default"><font face="gulim, sans-serif">Now, I want to perform the simulation (CBCT) with GPU </font></div><div class="yiv5358075506gmail_default"><font face="gulim, sans-serif">1. I have installed GATE with GPU (Nvidia)</font></div><div class="yiv5358075506gmail_default"><font face="gulim, sans-serif">2. SPECT_GPU is working, well. (properly launched GPU)</font></div><div class="yiv5358075506gmail_default">3. I have read the GATE-USER-GUIDE V7.2</div><div class="yiv5358075506gmail_default"><br></div><div class="yiv5358075506gmail_default">But, I could not success....</div><div class="yiv5358075506gmail_default"><br></div><div class="yiv5358075506gmail_default">Is there anyone to help me ? for performing MC simulation with GPU?</div><div class="yiv5358075506gmail_default"><br></div><div class="yiv5358075506gmail_default">Please let me know how can i solve this problem. </div><div class="yiv5358075506gmail_default"><br></div><div class="yiv5358075506gmail_default">All of the code is uploaded in GitHub. </div><div class="yiv5358075506gmail_default"><span style="font-family:gulim, sans-serif;"><a rel="nofollow" target="_blank" href="https://github.com/wjcheon/CBCT_Gate_GPU">https://github.com/wjcheon/CBCT_Gate_GPU</a></span><br></div><div class="yiv5358075506gmail_default"><span style="font-family:gulim, sans-serif;"><br></span></div><div class="yiv5358075506gmail_default">Thanks your attention. </div><div class="yiv5358075506gmail_default"><br></div><div class="yiv5358075506gmail_default">Best regards </div><div class="yiv5358075506gmail_default">Wonjoong Jason Cheon. </div><div class="yiv5358075506gmail_default"><font face="gulim, sans-serif"><br></font></div><div class="yiv5358075506gmail_default"><font face="gulim, sans-serif"><br></font></div><div><br></div>-- <br><div class="yiv5358075506gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div>--<br>Wonjoong Cheon, </div><div>M.S and Ph.D Integrated Program<br></div><div>Samsung Advanced Institute for Health Science & Technology, <b>S</b>ungKyunKwan <b>U</b>niversity.</div><div><b>M</b>edical <b>P</b>hysics Lab. - <b>SUMP</b> Lab.<br>Samsung Medical Center (135-710) 81 Irwon-ro Gangnam-gu, Seoul, Korea.<br>C.P)+82-10-4514-5249</div><div>Tel)+82-2-3410-2444</div><div><br></div><div>B.S. Dept. of Radiological Science, Yonsei University.<br>B.S. Dept. of Information and Communication Engineering , Yonsei University. (*dual major)<br>E-mail: <a rel="nofollow" ymailto="mailto:wonjoongcheon@gmail.com" target="_blank" href="mailto:wonjoongcheon@gmail.com">wonjoongcheon@gmail.com</a> // <a rel="nofollow" ymailto="mailto:wonjoong.c@skku.edu" target="_blank" href="mailto:wonjoong.c@skku.edu">wonjoong.c@skku.edu</a><br>----------------------------------------------------------------------------------------------------------------</div></div></div></div></div></div></div></div></div> </div></div><br>_______________________________________________<br>Gate-users mailing list<br><a ymailto="mailto:Gate-users@lists.opengatecollaboration.org" href="mailto:Gate-users@lists.opengatecollaboration.org">Gate-users@lists.opengatecollaboration.org</a><br><a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</a><br><br></div> </div> </div> </div></div></body></html>