<html><head><meta http-equiv="Content-Type" content="text/html charset=iso-8859-1"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;"><div><br></div><div>HI Alessandro,</div><div><br></div><div>you have to specify the path to the file:</div><div><br></div><div>GateMaterials.db </div><div><br></div><div>If you copy it into the same directory then the following</div><div>line should be sufficient:</div><div><br></div><div>/gate/geometry/setMaterialDatabase ./GateMaterials.db</div><div><span class="Apple-tab-span" style="white-space: pre;"> </span></div><div>Hope this helps.</div><div><br></div><div>Kind regards,</div><div><br></div><div>Uwe Pietrzyk</div><div><br></div><div> <div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;"><div><span style="orphans: 2; widows: 2;">/----------------------------------------------------------------------</span></div><div style="orphans: 2; widows: 2;">Prof. Dr. Uwe Pietrzyk<br>Diplom-Physiker<br>Institut für Neurowissenschaften und Medizin / INM-4<br>Forschungszentrum Jülich GmbH<br>52425 Jülich<br>Tel: +49-2461-61 4763<br>Fax: +49-2461-61 2820<br>Mobil: +49-162-103-4871<br>eMail: <a href="mailto:U.Pietrzyk@fz-juelich.de">U.Pietrzyk@fz-juelich.de</a><br><a href="http://www.fz-juelich.de/inm/inm-4/DE/Home/home_node.html">http://www.fz-juelich.de/inm/inm-4/DE/Home/home_node.html</a><br>&<br>Bergische Universität Wuppertal<br>Fakultät für Mathematik und Naturwissenschaften</div><div style="orphans: 2; widows: 2;">Büro: D.08.01<br>Gaußstr. 20<br>42097 Wuppertal<br>Tel: +49-(0)202-439-3523<br>Fax: +49-(0)202-439-2811<br>eMail: <a href="mailto:Uwe.Pietrzyk@physik.uni-wuppertal.de">Uwe.Pietrzyk@uni-wuppertal.de</a><br><a href="http://www.medizinphysik.uni-wuppertal.de/">http://www.medizinphysik.uni-wuppertal.de</a><br>----------------------------------------------------------------------/</div></div> </div> <br><div><div>On 03 Feb 2017, at 15:02, Alessandro Bellini <<a href="mailto:ale.notc@gmail.com">ale.notc@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><meta http-equiv="Content-Type" content="text/html; charset=utf-8"><div dir="ltr"><br></div><div class="gmail_extra"><br><div class="gmail_quote">2017-02-03 15:01 GMT+01:00 Alessandro Bellini <span dir="ltr"><<a href="mailto:ale.notc@gmail.com" target="_blank">ale.notc@gmail.com</a>></span>:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Thanks a lot!<div>I continued the examples, I receive the following error when I add the first level of the system</div><div><br></div><div><p class="m_4796386930550713161gmail-p1"><span class="m_4796386930550713161gmail-s1">Idle> /control/execute pet.mac</span></p><p class="m_4796386930550713161gmail-p1"><span class="m_4796386930550713161gmail-s1">WARNING: The vis manager will keep up to 100 events.</span></p><p class="m_4796386930550713161gmail-p1"><span class="m_4796386930550713161gmail-s1"> This may use a lot of memory.</span></p><p class="m_4796386930550713161gmail-p1"><span class="m_4796386930550713161gmail-s1"> It may be changed with, e.g., "/vis/scene/endOfEventAction accumulate 10".</span></p><p class="m_4796386930550713161gmail-p1"><span class="m_4796386930550713161gmail-s1"> CREATED THE COMMAND /gate/systems/cylindricalPET/<wbr>addAnewRsector</span></p><p class="m_4796386930550713161gmail-p1"><span class="m_4796386930550713161gmail-s1">/gate/box1/vis/forceWireframe> *****setMaterial Water</span></p><p class="m_4796386930550713161gmail-p2"><span class="m_4796386930550713161gmail-s1"></span><br></p><p class="m_4796386930550713161gmail-p1"><span class="m_4796386930550713161gmail-s1">***** Batch is interrupted!! *****</span></p><p class="m_4796386930550713161gmail-p1"><span class="m_4796386930550713161gmail-s1">Idle> </span></p></div><div>I think that it is due to the following line (the error shows up with this line</div><div>/gate/box1/setMaterial Water<br></div><div><br></div><div>I've attached pet.mac</div><div><br></div><div>Thanks a lot</div><div><br></div><div>Alessandro</div><div><br></div><div><br></div></div><div class="gmail_extra"><br><div class="gmail_quote"><div><div class="h5">2017-02-03 13:34 GMT+01:00 Pietrzyk, Uwe <span dir="ltr"><<a href="mailto:u.pietrzyk@fz-juelich.de" target="_blank">u.pietrzyk@fz-juelich.de</a>></span>:<br></div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="h5"><div style="word-wrap:break-word"><div><br></div><div>Hi Alesandro,</div><div><br></div><div>there were some commands missing. Please see the test.mac file in the attachment.</div><div>Maybe it would be a good idea to use one of the <b>examples</b> which come with the GATE</div><div>distribution or also the <b>EduGATE</b> examples, were you can learn , how to arrange</div><div>a simulation.</div><div><br></div><div>Kind regards, and best wishes,</div><div><br></div><div>Uwe Pietrzyk </div><div><br></div></div><br><div style="word-wrap:break-word"><div><br></div><div></div></div><br></div></div><div style="word-wrap:break-word"><br><div> <div style="letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; word-wrap: break-word;"><div><span>/-----------------------------<wbr>------------------------------<wbr>-----------</span></div><div>Prof. Dr. Uwe Pietrzyk<br>Diplom-Physiker<br>Institut für Neurowissenschaften und Medizin / INM-4<br>Forschungszentrum Jülich GmbH<br>52425 Jülich<br>Tel: <a href="tel:+49%202461%20614763" value="+492461614763" target="_blank">+49-2461-61 4763</a><br>Fax: <a href="tel:+49%202461%20612820" value="+492461612820" target="_blank">+49-2461-61 2820</a><br>Mobil: <a href="tel:+49%20162%201034871" value="+491621034871" target="_blank">+49-162-103-4871</a><br>eMail: <a href="mailto:U.Pietrzyk@fz-juelich.de" target="_blank">U.Pietrzyk@fz-juelich.d<wbr>e</a><br><a href="http://www.fz-juelich.de/inm/inm-4/DE/Home/home_node.html" target="_blank">http://www.fz-juelich.de/inm/i<wbr>nm-4/DE/Home/home_node.html</a><br>&<br>Bergische Universität Wuppertal<br>Fakultät für Mathematik und Naturwissenschaften</div><div>Büro: D.08.01<br>Gaußstr. 20<br>42097 Wuppertal<br>Tel: <a href="tel:+49%20202%204393523" value="+492024393523" target="_blank">+49-(0)202-439-3523</a><br>Fax: <a href="tel:+49%20202%204392811" value="+492024392811" target="_blank">+49-(0)202-439-2811</a><br>eMail: <a href="mailto:Uwe.Pietrzyk@physik.uni-wuppertal.de" target="_blank">Uwe.Pietrzyk@uni-wupper<wbr>tal.de</a><br><a href="http://www.medizinphysik.uni-wuppertal.de/" target="_blank">http://www.medizinphysik.uni-w<wbr>uppertal.de</a><br>------------------------------<wbr>------------------------------<wbr>----------/</div></div> </div> <br><div><div><div class="h5"><div>On 03 Feb 2017, at 12:48, Alessandro Bellini <<a href="mailto:ale.notc@gmail.com" target="_blank">ale.notc@gmail.com</a>> wrote:</div><br class="m_4796386930550713161m_1547210822463526164Apple-interchange-newline"></div></div><blockquote type="cite"><div><div class="h5"><div dir="ltr"><span style="font-size:12.8px">Dear GATE users,</span><br><div><span style="font-size:12.8px"><br></span></div><div><span style="font-size:12.8px">I've just installe GATE v7.2 on Mac OSX 10.11 and I'm trying the very first step using Gate User's Guide, and I have problems after very few lines</span></div><div><span style="font-size:12.8px"><br></span></div><div><div><span style="font-size:12.8px">#<span class="m_4796386930550713161m_1547210822463526164gmail-Apple-tab-span" style="white-space:pre-wrap"> </span>TEST GATE MANUAL</span></div><div><span style="font-size:12.8px"><br></span></div><div><span style="font-size:12.8px"># V I S U A L I Z A T I O N</span></div><div><span style="font-size:12.8px">/vis/open OGLSX</span></div><div><span style="font-size:12.8px">/vis/viewer/reset</span></div><div><span style="font-size:12.8px">/vis/viewer/set/viewpointTheta<wbr>Phi 60 60</span></div><div><span style="font-size:12.8px">/vis/viewer/zoom 1</span></div><div><span style="font-size:12.8px">/vis/viewer/set/style surface</span></div><div><span style="font-size:12.8px">/vis/drawVolume</span></div><div><span style="font-size:12.8px">/tracking/storeTrajectory 1</span></div><div><span style="font-size:12.8px">/vis/scene/endOfEventAction accumulate 10</span></div><div><span style="font-size:12.8px">/vis/viewer/update</span></div><div><span style="font-size:12.8px"><br></span></div><div><span style="font-size:12.8px"># G E O M E T R Y</span></div><div><span style="font-size:12.8px">/gate/geometry/setMaterialData<wbr>base GateMaterials.db<span class="m_4796386930550713161m_1547210822463526164gmail-Apple-tab-span" style="white-space:pre-wrap"> </span></span></div><div><span style="font-size:12.8px"><br></span></div><div><span style="font-size:12.8px"># W O R L D</span></div><div><span style="font-size:12.8px">/gate/world/geometry/setXLengt<wbr>h 40. cm</span></div><div><span style="font-size:12.8px">/gate/world/geometry/setYLengt<wbr>h 40. cm</span></div><div><span style="font-size:12.8px">/gate/world/geometry/setZLengt<wbr>h 40. cm</span></div><div><span style="font-size:12.8px"><br></span></div><div><span style="font-size:12.8px"># S Y S T E M</span></div><div><span style="font-size:12.8px">/gate/world/daughters/name cylindricalPET</span></div><div><span style="font-size:12.8px">/gate/world/daughters/insert cylinder</span></div><div><span style="font-size:12.8px">/gate/cylindricalPET/setMateri<wbr>al Water</span></div><div><span style="font-size:12.8px">/gate/cylindricalPET/geometry/<wbr>setRmax 100 mm</span></div><div><span style="font-size:12.8px">/gate/cylindricalPET/geometry/<wbr>setRmin 86 mm</span></div><div><span style="font-size:12.8px">/gate/cylindricalPET/geometry/<wbr>setHeight 18 mm</span></div><div><span style="font-size:12.8px">#/gate/cylindricalPET/vis/setC<wbr>olor red</span></div><div><span style="font-size:12.8px">/gate/cylindricalPET/vis/setVi<wbr>sible 1</span></div><div><span style="font-size:12.8px">/gate/cylindricalPET/vis/force<wbr>Wireframe</span></div><div><span style="font-size:12.8px">/vis/viewer/zoom 3</span></div><div style="font-size:12.8px"><br></div></div><div style="font-size:12.8px">I do not see the cylinder in the viewer, I only see the zoomed world.</div><div style="font-size:12.8px">Sorry for the very newbie question</div><div style="font-size:12.8px"><br></div><div style="font-size:12.8px">Thanks a lot</div><div style="font-size:12.8px"><br></div><div style="font-size:12.8px">Alessandro</div></div></div></div> ______________________________<wbr>_________________<br>Gate-users mailing list<br><a href="mailto:Gate-users@lists.opengatecollaboration.org" target="_blank">Gate-users@lists.opengatecolla<wbr>boration.org</a><br><a href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users" target="_blank">http://lists.opengatecollabora<wbr>tion.org/mailman/listinfo/<wbr>gate-users</a></blockquote></div><br></div><br></blockquote></div><br></div> </blockquote></div><br></div> <span><pet.mac></span></blockquote></div><br></body></html>