<html>
<head>
<meta content="text/html; charset=utf-8" http-equiv="Content-Type">
</head>
<body bgcolor="#FFFFFF" text="#000000">
<p>Hey Simon,</p>
<p>I compiled everything again and there were no more errors:) But
if I start Gate it states the following:</p>
<p><i>"Gate: error while loading shared libraries: libRTK.so: cannot
open shared object file: No such file or directory"</i></p>
<p>Why does it not find the libraries?</p>
<p>Cheers, Nico<br>
</p>
<div class="moz-cite-prefix">On 11/29/2016 10:09 PM, Simon Rit
wrote:<br>
</div>
<blockquote
cite="mid:CAF0oig0GtZ3oasQiNbp9MjYGKpZedzLF+O=zeeA7F7Lv91_oOg@mail.gmail.com"
type="cite">
<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
<div dir="ltr">
<div>
<div>Hi,<br>
</div>
I'm not sure what happened. Did you maybe update <span
class="" style="" id=":c75.1" tabindex="-1">ITK</span>
without recompiling it? Anyway, I'd suggest to recompile <span
class="" style="" id=":c75.2" tabindex="-1">ITK</span>, <span
class="" style="" id=":c75.3" tabindex="-1">RTK</span> and
Gate (in this order). Sorry for the trouble, I know these
dependencies are a bit inconvenient.<br>
</div>
Simon<br>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Tue, Nov 29, 2016 at 2:06 PM,
Triltsch, Nicolas <span dir="ltr"><<a
moz-do-not-send="true"
href="mailto:nicolas.triltsch@tum.de" target="_blank">nicolas.triltsch@tum.de</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div bgcolor="#FFFFFF" text="#000000">
<p>Hey Simon,</p>
<p>I followed your two changes 1) and 3) and after that I
compiled Gate again, in order to make the changes valid.
But now I get an error message when compiling gate_v7.2,
which says:</p>
<p>"<i><br>
</i></p>
<p><i>make[2]: *** No rule to make target
'/usr/local/bin/<wbr>InsightToolkit-4.10.1/<wbr>InsightToolkit-4.10.1-build/<wbr>lib/libITKReview-4.10.so.1',
needed by 'Gate'. Stop.</i><i><br>
</i><i>make[2]: *** Waiting for unfinished jobs....</i><i><br>
</i><i>[100%] Building CXX object
CMakeFiles/Gate.dir/source/<wbr>externals/clhep/src/CLHEP/<wbr>RandomObjects/RandomVector.cc.<wbr>o</i><i><br>
</i><i>CMakeFiles/Makefile2:67: recipe for target
'CMakeFiles/Gate.dir/all' failed</i><i><br>
</i><i>make[1]: *** [CMakeFiles/Gate.dir/all] Error 2</i><i><br>
</i><i>Makefile:127: recipe for target 'all' failed</i><i><br>
</i><i>make: *** [all] Error 2</i></p>
<p>"<br>
</p>
<p>Honestly, I have no idea what to do. I think it has
something to do with the ITK package, but I don't know
why. If you have an idea that would be great, as my Gate
is not running any more:/ If I type 'Gate' in the
terminal, it says now:</p>
<p>"</p>
<p><i>Gate: error while loading shared libraries:
libITKIOBMP-4.10.so.1: cannot open shared object file:
No such file or directory</i><br>
<br>
</p>
<p>"</p>
<p>Thanks in advance!</p>
<p>Nico<br>
</p>
<div>
<div class="h5">
<p><br>
</p>
<br>
<div class="m_5879467919337976632moz-cite-prefix">On
11/28/2016 03:57 PM, Simon Rit wrote:<br>
</div>
<blockquote type="cite">
<div dir="ltr">Hi,<br>
<div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Mon, Nov 28, 2016
at 2:00 PM, Triltsch, Nicolas <span
dir="ltr"><<a moz-do-not-send="true"
href="mailto:nicolas.triltsch@tum.de"
target="_blank">nicolas.triltsch@tum.de</a>></span>
wrote:<br>
<blockquote class="gmail_quote"
style="margin:0px 0px 0px
0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">Hey
everyone,<br>
<br>
I have three questions concerning the
fixed forced detection actor(ffda):<br>
<br>
1) As output one can generate e.g.
primary.mha, compton.mha, rayleigh.mha and
total.mha images. In the GATE wiki it
states, that primary + compton + rayleigh
= total. But if I compare the two images
they are different! Why? (total.mha image
was flatfield corrected by default;
primary, compton and rayleigh weren't, so
I used the flatField.mha to correct them
before the comparison with total.mha)<br>
</blockquote>
<div> I checked and there is a bug in the
total filename. However, it does not use
the flat field but rather one step was
forgotten (accounting for the total number
of particles in the simulation). I must
admit that I never use that output in
practice, hence the bug. This <a
moz-do-not-send="true"
href="https://github.com/OpenGATE/Gate/commit/988f886133ee741eeca692df027e7786e025c7bc"
target="_blank">fix</a> should correct
that.<br>
</div>
<blockquote class="gmail_quote"
style="margin:0px 0px 0px
0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex"> <br>
2) For the ffda the source needs to be
focused. Why is that necessary?<br>
</blockquote>
<div>Because ffda uses <a
moz-do-not-send="true"
href="http://openrtk.org/"
target="_blank">RTK</a> for
deterministic computation and RTK is
working for point sources. <br>
</div>
<div><br>
</div>
<blockquote class="gmail_quote"
style="margin:0px 0px 0px
0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex"> <br>
3) One output image is called
secondary.mha. First, I thought this image
would represent secondary scatter events.
But in the GATE wiki it says that
secondary = compton + rayleigh. Is their a
way to obtain a secondary scatter
(multiple scatter) image?<br>
</blockquote>
<div>It used to be possible but I think we
have removed it to "minimize" the number
of options. You can try (but I don't
guarantee it works) to add a line in the
code, e.g. around line 57 of
GateFixedForcedDetectionActor.<wbr>cc:<br>
mPerOrderImagesBaseName="<wbr>order";<br>
</div>
<div>It will then create an image of the
form "orderRayleigh0004_order02.<wbr>mha"
for the second order of the rayleigh
projection number 4.<br>
</div>
<div>Simon<br>
</div>
<div><br>
<br>
</div>
<blockquote class="gmail_quote"
style="margin:0px 0px 0px
0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex"> <br>
<br>
I would appreciate any help!<br>
<br>
Nico<br>
<br>
______________________________<wbr>_________________<br>
Gate-users mailing list<br>
<a moz-do-not-send="true"
href="mailto:Gate-users@lists.opengatecollaboration.org"
target="_blank">Gate-users@lists.opengatecolla<wbr>boration.org</a><br>
<a moz-do-not-send="true"
href="http://lists.opengatecollaboration.org/mailman/listinfo/gate-users"
rel="noreferrer" target="_blank">http://lists.opengatecollabora<wbr>tion.org/mailman/listinfo/gate<wbr>-users</a></blockquote>
</div>
<br>
</div>
</div>
</div>
</blockquote>
<br>
</div>
</div>
</div>
</blockquote>
</div>
<br>
</div>
</blockquote>
<br>
</body>
</html>