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<div class="moz-cite-prefix">Interestingly, I was just trying out
the STIR's Gate interface. Left a comment at github.<br>
<br>
Cheers<br>
<br>
Andrej<br>
<br>
<br>
<br>
On 10/14/16 13:37, Thielemans, Kris wrote:<br>
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<p class="MsoNormal"><span
style="color:#1F497D;mso-fareast-language:EN-US">Dear
Mariarita<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="color:#1F497D;mso-fareast-language:EN-US">LMF support
in STIR has never worked. Nobody put in the “final mile”. If
you’re interested in helping that going, please send an
email to
<a moz-do-not-send="true"
href="mailto:stir-devel@lists.sourceforge.net">stir-devel@lists.sourceforge.net</a>.
It shouldn’t be a major effort if you’re familiar with C++,
CMake and all that.<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="color:#1F497D;mso-fareast-language:EN-US">On the
other hand, Nikos Efthimiou has just added ROOT support to
STIR. It’s still only available from our development version
at
<a moz-do-not-send="true" href="https://github.com/UCL/STIR">https://github.com/UCL/STIR</a>.
You could try to give that a go. If you find any problems
with that, please file an Issue on github.<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="color:#1F497D;mso-fareast-language:EN-US">I’m not
sure what you’re saying about STIR_Matlab. This is all still
a bit experimental of course. Python support is much more
stable. Did you check the STIR Wiki? In any case, STIR
questions should go to the STIR mailing lists.<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="color:#1F497D;mso-fareast-language:EN-US">Good luck<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">Kris Thielemans<br>
Reader in Medical Imaging Physics at University College
London,<br>
Institute of Nuclear Medicine, UCL Hospital, Tower 5,<br>
235 Euston Road, London NW1 2BU, UK<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="color:#1F497D;mso-fareast-language:EN-US"><o:p> </o:p></span></p>
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1.0pt;padding:3.0pt 0cm 0cm 0cm">
<p class="MsoNormal"><b><span lang="EN-US">From:</span></b><span
lang="EN-US"> Gate-users
[<a class="moz-txt-link-freetext" href="mailto:gate-users-bounces@lists.opengatecollaboration.org">mailto:gate-users-bounces@lists.opengatecollaboration.org</a>]
<b>On Behalf Of </b>Mariarita s<br>
<b>Sent:</b> 14 October 2016 10:32<br>
<b>To:</b> <a class="moz-txt-link-abbreviated" href="mailto:gate-users@lists.opengatecollaboration.org">gate-users@lists.opengatecollaboration.org</a><br>
<b>Subject:</b> [Gate-users] LMF file analysis<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><span style="font-size:12.0pt" lang="IT">Dear
all,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt" lang="IT"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt" lang="EN-US">recently
I have started working with Gate simulation, I had simulated
a PET system, in particular for small animals using
example_PET with the PET_CylindricalPET_System.mac, by
changing the characteristics of the system as my reference
experimental setup. I have added the LMF commands in order
to obtain a phantom image to compare with the experimental
one.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt" lang="EN-US">About
that I tried to use STIR, so I installed STIR_Matlab, but
there are many problems because the program doesn’t
recognize the STIR and swig libraries, even if the library
paths are added.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt" lang="EN-US">So,
I would ask you, how can I analyze the .ccs file? I would
analyze the information obtained from .ccs file and
“transform them” in order to obtain a PET image.
<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt" lang="EN-US">Thanks
so much, <o:p>
</o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt" lang="EN-US">Yours
sincerely<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt" lang="EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:12.0pt" lang="EN-US">Mariarita
</span>
<span lang="EN-US"><o:p></o:p></span></p>
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<pre wrap="">_______________________________________________
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