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<DIV>Hello,</DIV>
<DIV> I used VoxelizedPhantom and VoxelizedSource to
simulation, and then I cannot find Compton interactions and Rayleigh
interactions in phantoms. Who can tell me Why? The next is the Physics:</DIV>
<DIV>
<DIV>#</DIV>
<DIV># P H Y S I C S</DIV>
<DIV>#</DIV>
<DIV>/gate/physics/addProcess PhotoElectric</DIV>
<DIV>/gate/physics/processes/PhotoElectric/setModel StandardModel</DIV>
<DIV> </DIV>
<DIV>/gate/physics/addProcess Compton</DIV>
<DIV>/gate/physics/processes/Compton/setModel StandardModel</DIV>
<DIV> </DIV>
<DIV>/gate/physics/addProcess RayleighScattering</DIV>
<DIV>/gate/physics/processes/RayleighScattering/setModel PenelopeModel</DIV>
<DIV> </DIV>
<DIV>/gate/physics/addProcess ElectronIonisation</DIV>
<DIV>/gate/physics/processes/ElectronIonisation/setModel StandardModel e-</DIV>
<DIV>/gate/physics/processes/ElectronIonisation/setModel StandardModel e+</DIV>
<DIV> </DIV>
<DIV>/gate/physics/addProcess Bremsstrahlung</DIV>
<DIV>/gate/physics/processes/Bremsstrahlung/setModel StandardModel e-</DIV>
<DIV>/gate/physics/processes/Bremsstrahlung/setModel StandardModel e+</DIV>
<DIV> </DIV>
<DIV>/gate/physics/addProcess PositronAnnihilation</DIV>
<DIV>
<DIV>/gate/physics/addProcess MultipleScattering e+</DIV>
<DIV>/gate/physics/addProcess MultipleScattering e-</DIV>
<DIV> </DIV>
<DIV>/gate/physics/processList Enabled</DIV>
<DIV>/gate/physics/processList Initialized</DIV>
<DIV> </DIV>
<DIV>
<DIV># Cuts for particle in NEMACylinder</DIV>
<DIV>/gate/physics/Electron/SetCutInRegion LYSO 1.0 cm</DIV>
<DIV>/gate/physics/Positron/SetCutInRegion LYSO 1.0 cm</DIV>
<DIV> </DIV>
<DIV>/gate/physics/Gamma/SetCutInRegion hof_brain
0.1 mm</DIV>
<DIV>/gate/physics/Electron/SetCutInRegion hof_brain 0.1 mm</DIV>
<DIV>/gate/physics/Positron/SetCutInRegion hof_brain 0.1 mm</DIV>
<DIV> </DIV>
<DIV>/gate/physics/SetMaxStepSizeInRegion hof_brain 0.01
mm</DIV></DIV></DIV></DIV>
<DIV> </DIV>
<DIV> </DIV>
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<DIV><SPAN>
<DIV style="FONT-SIZE: 10pt; FONT-FAMILY: verdana">
<DIV>=================================================</DIV>
<DIV>高娟</DIV>
<DIV>核技术应用研究中心</DIV>
<DIV>地址：主楼C226室</DIV>
<DIV>电话：88235869</DIV>
<DIV>=================================================</DIV>
<DIV>Juan Gao</DIV>
<DIV>Institute of High Energy Physics</DIV>
<DIV>Chinese of Academy of Sciences</DIV>
<DIV>Beijing, China</DIV>
<DIV>tel:86-010-88236364</DIV></DIV></SPAN></DIV>
<DIV> </DIV>
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<DIV><B>From:</B> <A
href="mailto:gate-users-request@lists.opengatecollaboration.org">gate-users-request</A></DIV>
<DIV><B>Date:</B> 2016-01-26 21:22</DIV>
<DIV><B>To:</B> <A
href="mailto:gate-users@lists.opengatecollaboration.org">gate-users</A></DIV>
<DIV><B>Subject:</B> Gate-users Digest, Vol 116, Issue 24</DIV></DIV></DIV>
<DIV>
<DIV>Send Gate-users mailing list submissions to</DIV>
<DIV>gate-users@lists.opengatecollaboration.org</DIV>
<DIV> </DIV>
<DIV>To subscribe or unsubscribe via the World Wide Web, visit</DIV>
<DIV>http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</DIV>
<DIV>or, via email, send a message with subject or body 'help' to</DIV>
<DIV>gate-users-request@lists.opengatecollaboration.org</DIV>
<DIV> </DIV>
<DIV>You can reach the person managing the list at</DIV>
<DIV>gate-users-owner@lists.opengatecollaboration.org</DIV>
<DIV> </DIV>
<DIV>When replying, please edit your Subject line so it is more specific</DIV>
<DIV>than "Re: Contents of Gate-users digest..."</DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV>Today's Topics:</DIV>
<DIV> </DIV>
<DIV> 1. Fwd: Problem with Gate simulation (David Sarrut)</DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV>----------------------------------------------------------------------</DIV>
<DIV> </DIV>
<DIV>Message: 1</DIV>
<DIV>Date: Tue, 26 Jan 2016 15:42:21 +0100</DIV>
<DIV>From: David Sarrut <David.Sarrut@creatis.insa-lyon.fr></DIV>
<DIV>To: gate-users <gate-users@lists.opengatecollaboration.org></DIV>
<DIV>Cc: mart.vallieres@gmail.com, ielnaqa@med.umich.edu</DIV>
<DIV>Subject: [Gate-users] Fwd: Problem with Gate simulation</DIV>
<DIV>Message-ID:</DIV>
<DIV><CAKTJC4AaygxCSRBki7vd3SeV3Wx5f5NsKKXj1w7k8v0HMn92fw@mail.gmail.com></DIV>
<DIV>Content-Type: text/plain; charset="utf-8"</DIV>
<DIV> </DIV>
<DIV>Hello,</DIV>
<DIV> </DIV>
<DIV>hard to say ... It seems fine for me. Except: that we recommend to use
the</DIV>
<DIV>physic list builder</DIV>
<DIV>http://wiki.opengatecollaboration.org/index.php/Users_Guide_V7.1:Setting_up_the_physics#New_physics_list_mechanism</DIV>
<DIV>instead of the manual phys list.</DIV>
<DIV> </DIV>
<DIV>To hunt the bug, try to start with a very very simple macro that
works,</DIV>
<DIV>than add progressively new elements until it fails.</DIV>
<DIV> </DIV>
<DIV>David</DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV>On Tue, Jan 26, 2016 at 1:58 AM, Martin Valli?res
<mart.vallieres@gmail.com></DIV>
<DIV>wrote:</DIV>
<DIV> </DIV>
<DIV>> Hi Dr. Sarrut,</DIV>
<DIV>></DIV>
<DIV>> For some unknown reason, the email I sent to the GATE users list
gets</DIV>
<DIV>> blocked and not sent, so this is why I am sending this email to you
only</DIV>
<DIV>> until I solve the mail issue.</DIV>
<DIV>></DIV>
<DIV>> I am now having a huge segmentation fault using GATE, and I have not
much</DIV>
<DIV>> ideas where to start to debug that. Attached are some files that may
help</DIV>
<DIV>> in describing the bug.</DIV>
<DIV>></DIV>
<DIV>> I would so much appreciate if you could help me, or point me in the
good</DIV>
<DIV>> direction.</DIV>
<DIV>></DIV>
<DIV>> Best regards,</DIV>
<DIV>> -------------------------------------------------------------</DIV>
<DIV>> Martin Valli?res, PhD candidate</DIV>
<DIV>> Medical Physics Unit, McGill University</DIV>
<DIV>> martin.carrier-vallieres@mail.mcgill.ca</DIV>
<DIV>> 1-514-839-0248</DIV>
<DIV>></DIV>
<DIV>> Cedars Cancer Centre, DS1.7116</DIV>
<DIV>> McGill University Health Centre - Glen Campus</DIV>
<DIV>> 1001 boulevard D?carie</DIV>
<DIV>> Montreal (QC), H4A 3J1</DIV>
<DIV>> -------------------------------------------------------------</DIV>
<DIV>></DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV>-- </DIV>
<DIV>David Sarrut, Phd</DIV>
<DIV>Directeur de recherche CNRS</DIV>
<DIV>CREATIS, UMR CNRS 5220, Inserm U1206</DIV>
<DIV>Centre de lutte contre le cancer L?on B?rard</DIV>
<DIV>28 rue La?nnec, 69373 Lyon cedex 08</DIV>
<DIV>Tel : 04 78 78 51 51 / 06 74 72 05 42</DIV>
<DIV>http://www.creatis.insa-lyon.fr/~dsarrut</DIV>
<DIV>_________________________________</DIV>
<DIV>"2 + 2 = 5, for extremely large values of 2"</DIV>
<DIV>_________________________________</DIV>
<DIV>-------------- next part --------------</DIV>
<DIV>An HTML attachment was scrubbed...</DIV>
<DIV>URL:
<http://lists.opengatecollaboration.org/mailman/private/gate-users/attachments/20160126/0aad19fa/attachment.html></DIV>
<DIV>-------------- next part --------------</DIV>
<DIV> </DIV>
<DIV>*** Break *** segmentation violation</DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV>===========================================================</DIV>
<DIV>There was a crash.</DIV>
<DIV>This is the entire stack trace of all threads:</DIV>
<DIV>===========================================================</DIV>
<DIV>#0 0x000000307e2ac61e in waitpid () from /lib64/libc.so.6</DIV>
<DIV>#1 0x000000307e23e609 in do_system () from /lib64/libc.so.6</DIV>
<DIV>#2 0x00002b5e83070448 in TUnixSystem::StackTrace() () from
/gs/project/bnq-630-aa/martin/PET_SIM/root_v5.34/lib/libCore.so</DIV>
<DIV>#3 0x00002b5e8306f2c3 in TUnixSystem::DispatchSignals(ESignals) ()
from /gs/project/bnq-630-aa/martin/PET_SIM/root_v5.34/lib/libCore.so</DIV>
<DIV>#4 <signal handler called></DIV>
<DIV>#5 0x000000308869d4eb in std::basic_string<char,
std::char_traits<char>, std::allocator<char>
>::assign(std::basic_string<char, std::char_traits<char>,
std::allocator<char> > const&) () from
/usr/lib64/libstdc++.so.6</DIV>
<DIV>#6 0x00000000007318e3 in GateAnalysis::RecordEndOfEvent(G4Event
const*) ()</DIV>
<DIV>#7 0x0000000000725fba in GateOutputMgr::RecordEndOfEvent(G4Event
const*) ()</DIV>
<DIV>#8 0x0000000000774ae9 in GateEventAction::EndOfEventAction(G4Event
const*) ()</DIV>
<DIV>#9 0x00002b5e7f2e6689 in G4EventManager::DoProcessing(G4Event*) ()
from
/gs/project/bnq-630-aa/martin/PET_SIM/geant4.10.01-install/lib64/libG4event.so</DIV>
<DIV>#10 0x00002b5e7f08ef17 in G4RunManager::ProcessOneEvent(int) () from
/gs/project/bnq-630-aa/martin/PET_SIM/geant4.10.01-install/lib64/libG4run.so</DIV>
<DIV>#11 0x00002b5e7f08e5d5 in G4RunManager::DoEventLoop(int, char const*, int)
() from
/gs/project/bnq-630-aa/martin/PET_SIM/geant4.10.01-install/lib64/libG4run.so</DIV>
<DIV>#12 0x00002b5e7f08e56c in G4RunManager::BeamOn(int, char const*, int) ()
from
/gs/project/bnq-630-aa/martin/PET_SIM/geant4.10.01-install/lib64/libG4run.so</DIV>
<DIV>#13 0x000000000084a1d2 in GateApplicationMgr::StartDAQ() ()</DIV>
<DIV>#14 0x000000000089e9c8 in
GateApplicationMgrMessenger::SetNewValue(G4UIcommand*, G4String) ()</DIV>
<DIV>#15 0x00002b5e8224c2cb in G4UIcommand::DoIt(G4String) () from
/gs/project/bnq-630-aa/martin/PET_SIM/geant4.10.01-install/lib64/libG4intercoms.so</DIV>
<DIV>#16 0x00002b5e822596b7 in G4UImanager::ApplyCommand(char const*) () from
/gs/project/bnq-630-aa/martin/PET_SIM/geant4.10.01-install/lib64/libG4intercoms.so</DIV>
<DIV>#17 0x00002b5e8223eaa7 in G4UIbatch::ExecCommand(G4String const&) ()
from
/gs/project/bnq-630-aa/martin/PET_SIM/geant4.10.01-install/lib64/libG4intercoms.so</DIV>
<DIV>#18 0x00002b5e8223fa3b in G4UIbatch::SessionStart() () from
/gs/project/bnq-630-aa/martin/PET_SIM/geant4.10.01-install/lib64/libG4intercoms.so</DIV>
<DIV>#19 0x00002b5e82257313 in G4UImanager::ExecuteMacroFile(char const*) ()
from
/gs/project/bnq-630-aa/martin/PET_SIM/geant4.10.01-install/lib64/libG4intercoms.so</DIV>
<DIV>#20 0x00002b5e82252658 in G4UIcontrolMessenger::SetNewValue(G4UIcommand*,
G4String) () from
/gs/project/bnq-630-aa/martin/PET_SIM/geant4.10.01-install/lib64/libG4intercoms.so</DIV>
<DIV>#21 0x00002b5e8224c2cb in G4UIcommand::DoIt(G4String) () from
/gs/project/bnq-630-aa/martin/PET_SIM/geant4.10.01-install/lib64/libG4intercoms.so</DIV>
<DIV>#22 0x00002b5e822596b7 in G4UImanager::ApplyCommand(char const*) () from
/gs/project/bnq-630-aa/martin/PET_SIM/geant4.10.01-install/lib64/libG4intercoms.so</DIV>
<DIV>#23 0x00000000004ef83d in main ()</DIV>
<DIV>===========================================================</DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV>The lines below might hint at the cause of the crash.</DIV>
<DIV>If they do not help you then please submit a bug report at</DIV>
<DIV>http://root.cern.ch/bugs. Please post the ENTIRE stack trace</DIV>
<DIV>from above as an attachment in addition to anything else</DIV>
<DIV>that might help us fixing this issue.</DIV>
<DIV>===========================================================</DIV>
<DIV>#5 0x000000308869d4eb in std::basic_string<char,
std::char_traits<char>, std::allocator<char>
>::assign(std::basic_string<char, std::char_traits<char>,
std::allocator<char> > const&) () from
/usr/lib64/libstdc++.so.6</DIV>
<DIV>#6 0x00000000007318e3 in GateAnalysis::RecordEndOfEvent(G4Event
const*) ()</DIV>
<DIV>#7 0x0000000000725fba in GateOutputMgr::RecordEndOfEvent(G4Event
const*) ()</DIV>
<DIV>#8 0x0000000000774ae9 in GateEventAction::EndOfEventAction(G4Event
const*) ()</DIV>
<DIV>#9 0x00002b5e7f2e6689 in G4EventManager::DoProcessing(G4Event*) ()
from
/gs/project/bnq-630-aa/martin/PET_SIM/geant4.10.01-install/lib64/libG4event.so</DIV>
<DIV>#10 0x00002b5e7f08ef17 in G4RunManager::ProcessOneEvent(int) () from
/gs/project/bnq-630-aa/martin/PET_SIM/geant4.10.01-install/lib64/libG4run.so</DIV>
<DIV>#11 0x00002b5e7f08e5d5 in G4RunManager::DoEventLoop(int, char const*, int)
() from
/gs/project/bnq-630-aa/martin/PET_SIM/geant4.10.01-install/lib64/libG4run.so</DIV>
<DIV>#12 0x00002b5e7f08e56c in G4RunManager::BeamOn(int, char const*, int) ()
from
/gs/project/bnq-630-aa/martin/PET_SIM/geant4.10.01-install/lib64/libG4run.so</DIV>
<DIV>#13 0x000000000084a1d2 in GateApplicationMgr::StartDAQ() ()</DIV>
<DIV>#14 0x000000000089e9c8 in
GateApplicationMgrMessenger::SetNewValue(G4UIcommand*, G4String) ()</DIV>
<DIV>#15 0x00002b5e8224c2cb in G4UIcommand::DoIt(G4String) () from
/gs/project/bnq-630-aa/martin/PET_SIM/geant4.10.01-install/lib64/libG4intercoms.so</DIV>
<DIV>#16 0x00002b5e822596b7 in G4UImanager::ApplyCommand(char const*) () from
/gs/project/bnq-630-aa/martin/PET_SIM/geant4.10.01-install/lib64/libG4intercoms.so</DIV>
<DIV>#17 0x00002b5e8223eaa7 in G4UIbatch::ExecCommand(G4String const&) ()
from
/gs/project/bnq-630-aa/martin/PET_SIM/geant4.10.01-install/lib64/libG4intercoms.so</DIV>
<DIV>#18 0x00002b5e8223fa3b in G4UIbatch::SessionStart() () from
/gs/project/bnq-630-aa/martin/PET_SIM/geant4.10.01-install/lib64/libG4intercoms.so</DIV>
<DIV>#19 0x00002b5e82257313 in G4UImanager::ExecuteMacroFile(char const*) ()
from
/gs/project/bnq-630-aa/martin/PET_SIM/geant4.10.01-install/lib64/libG4intercoms.so</DIV>
<DIV>#20 0x00002b5e82252658 in G4UIcontrolMessenger::SetNewValue(G4UIcommand*,
G4String) () from
/gs/project/bnq-630-aa/martin/PET_SIM/geant4.10.01-install/lib64/libG4intercoms.so</DIV>
<DIV>#21 0x00002b5e8224c2cb in G4UIcommand::DoIt(G4String) () from
/gs/project/bnq-630-aa/martin/PET_SIM/geant4.10.01-install/lib64/libG4intercoms.so</DIV>
<DIV>#22 0x00002b5e822596b7 in G4UImanager::ApplyCommand(char const*) () from
/gs/project/bnq-630-aa/martin/PET_SIM/geant4.10.01-install/lib64/libG4intercoms.so</DIV>
<DIV>#23 0x00000000004ef83d in main ()</DIV>
<DIV>===========================================================</DIV>
<DIV> </DIV>
<DIV>-------------- next part --------------</DIV>
<DIV>[G4] </DIV>
<DIV>[G4] *************************************************************</DIV>
<DIV>[G4] Geant4 version Name: geant4-10-01
(5-December-2014)</DIV>
<DIV>[G4]
Copyright : Geant4 Collaboration</DIV>
<DIV>[G4]
Reference : NIM A 506 (2003), 250-303</DIV>
<DIV>[G4]
WWW : http://cern.ch/geant4</DIV>
<DIV>[G4] *************************************************************</DIV>
<DIV>[G4] </DIV>
<DIV>[Core-0] Initialization of geometry</DIV>
<DIV>[Core-0] Initialization of physics</DIV>
<DIV>[Core-0] Initialization of actors</DIV>
<DIV>[Core-0] </DIV>
<DIV>[Core-0]
**********************************************************************</DIV>
<DIV>[Core-0] GATE version name:
gate_v7.1
</DIV>
<DIV>[Core-0]
Copyright : OpenGATE
Collaboration
</DIV>
<DIV>[Core-0]
Reference : Phys. Med. Biol. 49 (2004) 4543-4561 </DIV>
<DIV>[Core-0]
Reference : Phys. Med. Biol. 56 (2011) 881-901 </DIV>
<DIV>[Core-0]
WWW :
http://www.opengatecollaboration.org
</DIV>
<DIV>[Core-0]
**********************************************************************</DIV>
<DIV>[Core-0] </DIV>
<DIV>[Core-0] You are using Geant4 version 10.1.0</DIV>
<DIV>/control/alias simNumber 1</DIV>
<DIV>/control/alias simTimeSlice 0.083333</DIV>
<DIV>/control/alias simTimeStart 0.000000</DIV>
<DIV>/control/alias simTimeStop 0.083333</DIV>
<DIV>/control/alias seed 733251318</DIV>
<DIV>[Core-0] Starting macro simuMacro.mac</DIV>
<DIV>CREATED THE COMMAND /gate/systems/cylindricalPET/addAnewRsector</DIV>
<DIV>### WARNING ### setSkipEqualMaterials at false !! The Geant4 method is not
safe since the release 9.5 - Need to be fixed</DIV>
<DIV>### WARNING ### setSkipEqualMaterials at false !! The Geant4 method is not
safe since the release 9.5 - Need to be fixed</DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV>List of Enabled processes:</DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV> === Process: RayleighScattering ===</DIV>
<DIV>Particle: gamma</DIV>
<DIV> * Model(s):</DIV>
<DIV> - PenelopeModel</DIV>
<DIV> </DIV>
<DIV> === Process: eMultipleScattering ===</DIV>
<DIV>Particle: e+</DIV>
<DIV> * Model(s):</DIV>
<DIV> - <!> *** Warning *** <!>
No model selected!</DIV>
<DIV>Particle: e-</DIV>
<DIV> * Model(s):</DIV>
<DIV> - <!> *** Warning *** <!>
No model selected!</DIV>
<DIV> </DIV>
<DIV> === Process: Compton ===</DIV>
<DIV>Particle: gamma</DIV>
<DIV> * Model(s):</DIV>
<DIV> - StandardModel</DIV>
<DIV> </DIV>
<DIV> === Process: ElectronIonisation ===</DIV>
<DIV>Particle: e+</DIV>
<DIV> * Model(s):</DIV>
<DIV> - StandardModel</DIV>
<DIV>Particle: e-</DIV>
<DIV> * Model(s):</DIV>
<DIV> - StandardModel</DIV>
<DIV> </DIV>
<DIV> === Process: Bremsstrahlung ===</DIV>
<DIV>Particle: e+</DIV>
<DIV> * Model(s):</DIV>
<DIV> - StandardModel</DIV>
<DIV>Particle: e-</DIV>
<DIV> * Model(s):</DIV>
<DIV> - StandardModel</DIV>
<DIV> </DIV>
<DIV> === Process: PositronAnnihilation ===</DIV>
<DIV>Particle: e+</DIV>
<DIV> </DIV>
<DIV> === Process: PhotoElectric ===</DIV>
<DIV>Particle: gamma</DIV>
<DIV> * Model(s):</DIV>
<DIV> - StandardModel</DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV>List of initialized processes:</DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV>[Core-0] Initialization of geometry</DIV>
<DIV>Header read from
'/gs/project/bnq-630-aa/martin/SIMU_PET/test/simuPhantom.h33'</DIV>
<DIV>Data file name
'/gs/project/bnq-630-aa/martin/SIMU_PET/test/simuPhantom.i33'</DIV>
<DIV>Nb of planes:
47</DIV>
<DIV>Nb of pixels per plane: 91 91</DIV>
<DIV>Pixel
size:
5.46875 5.46875</DIV>
<DIV>Slice thickness: 3.27</DIV>
<DIV>Matrix
size: 497.656
497.656</DIV>
<DIV>Data
type:
FLOAT</DIV>
<DIV>Bytes per pixel: 4</DIV>
<DIV>Data byte order:
LITTLEENDIAN</DIV>
<DIV>Machine byte order: LITTLEENDIAN</DIV>
<DIV> </DIV>
<DIV>[Core-0] Initialization of physics</DIV>
<DIV>[Physic-0] WARNING: manual physic lists are being deprecated.</DIV>
<DIV>Please, use physic list builder mechanism instead. Related documentation
can be found at:</DIV>
<DIV>http://wiki.opengatecollaboration.org/index.php/Users_Guide_V7.0:Setting_up_the_physics</DIV>
<DIV>[Core-0] Initialization of actors</DIV>
<DIV>------------------------------------------------------------------------------------------------</DIV>
<DIV>WARNING: Macro commands related to voxelized source description have been
modified in GATE V7.1.</DIV>
<DIV>Older ones are being deprecated and will be removed from the next
release.</DIV>
<DIV>Please, have a look at the related documentation at:</DIV>
<DIV>http://wiki.opengatecollaboration.org/index.php/Users_Guide_V7.1:Voxelized_Source_and_Phantom</DIV>
<DIV>------------------------------------------------------------------------------------------------</DIV>
<DIV>GateSourceVoxelInterfileReader::ReadFile : fileName:
/gs/project/bnq-630-aa/martin/SIMU_PET/test/simuSource.h33</DIV>
<DIV>Header read from
'/gs/project/bnq-630-aa/martin/SIMU_PET/test/simuSource.h33'</DIV>
<DIV>Data file name
'/gs/project/bnq-630-aa/martin/SIMU_PET/test/simuSource.i33'</DIV>
<DIV>Nb of planes:
47</DIV>
<DIV>Nb of pixels per plane: 46 46</DIV>
<DIV>Pixel
size:
5.46875 5.46875</DIV>
<DIV>Slice thickness: 3.27</DIV>
<DIV>Matrix
size: 251.562
251.562</DIV>
<DIV>Data
type:
UNSIGNED INTEGER</DIV>
<DIV>Bytes per pixel: 2</DIV>
<DIV>Data byte order:
LITTLEENDIAN</DIV>
<DIV>Machine byte order: LITTLEENDIAN</DIV>
<DIV> </DIV>
<DIV>[Acquisition-0]
</DIV>
<DIV>[Acquisition-0] ============= Source initialization =============</DIV>
<DIV>[Acquisition-0]
</DIV>
<DIV>[Acquisition-0] ============= Acquisition starts! =============</DIV>
<DIV>[Acquisition-0] Simulation start time = 0 sec</DIV>
<DIV>[Acquisition-0] Simulation end time = 0.083333 sec</DIV>
<DIV>[Acquisition-0] Simulation will have = 1 run(s)</DIV>
<DIV>[Acquisition-0] Slice 0 from 0 to 0.083333 s [slice=0.083333 s], final stop
at 0.083333 s.</DIV>
<DIV> </DIV>
<DIV>RayleighScattering: for gamma, applyCuts:
1 SubType= 11 BuildTable= 1</DIV>
<DIV> Lambda table from 100 eV to 100 keV, 7
bins per decade, spline: 0</DIV>
<DIV> LambdaPrime table from 100 keV to 10 TeV in
56 bins </DIV>
<DIV> ===== EM models for the G4Region
DefaultRegionForTheWorld ======</DIV>
<DIV> PenRayleigh :
Emin= 0 eV
Emax= 100 GeV</DIV>
<DIV> </DIV>
<DIV>Compton: for gamma, applyCuts: 1
SubType= 13 BuildTable= 1</DIV>
<DIV> Lambda table from 100 eV to 1 MeV, 7
bins per decade, spline: 1</DIV>
<DIV> LambdaPrime table from 1 MeV to 10 TeV in 49
bins </DIV>
<DIV> ===== EM models for the G4Region
DefaultRegionForTheWorld ======</DIV>
<DIV> Klein-Nishina :
Emin= 0 eV
Emax= 10 TeV</DIV>
<DIV> </DIV>
<DIV>PhotoElectric: for gamma, applyCuts:
1 SubType= 12 BuildTable= 0</DIV>
<DIV> LambdaPrime table from 200 keV to 10 TeV in
54 bins </DIV>
<DIV> ===== EM models for the G4Region
DefaultRegionForTheWorld ======</DIV>
<DIV> PhotoElectric :
Emin= 0 eV
Emax= 10 TeV
AngularGenSauterGavrila</DIV>
<DIV> </DIV>
<DIV>msc: for e- SubType= 10</DIV>
<DIV> RangeFactor= 0.04, stepLimitType: 1,
latDisplacement: 1</DIV>
<DIV> ===== EM models for the G4Region
DefaultRegionForTheWorld ======</DIV>
<DIV> UrbanMsc
: Emin= 0 eV
Emax= 10 TeV Table with 77 bins
Emin= 100 eV Emax=
10 TeV</DIV>
<DIV> </DIV>
<DIV>ElectronIonisation: for e- SubType=
2</DIV>
<DIV> dE/dx and range tables from 100 eV to
10 TeV in 77 bins</DIV>
<DIV> Lambda tables from threshold to 10 TeV, 7
bins per decade, spline: 1</DIV>
<DIV> finalRange(mm)= 1, dRoverRange= 0.2,
integral: 1, fluct: 1, linLossLimit= 0.01</DIV>
<DIV> ===== EM models for the G4Region
DefaultRegionForTheWorld ======</DIV>
<DIV> MollerBhabha :
Emin= 0 eV
Emax= 10 TeV</DIV>
<DIV> </DIV>
<DIV>Bremsstrahlung: for e- SubType= 3</DIV>
<DIV> dE/dx and range tables from 100 eV to
10 TeV in 77 bins</DIV>
<DIV> Lambda tables from threshold to 10 TeV, 7
bins per decade, spline: 1</DIV>
<DIV> LPM flag: 1 for E > 1 GeV</DIV>
<DIV> ===== EM models for the G4Region
DefaultRegionForTheWorld ======</DIV>
<DIV>
eBremSB : Emin= 0
eV Emax= 1
GeV DipBustGen</DIV>
<DIV> eBremLPM
: Emin= 1 GeV
Emax= 10 TeV DipBustGen</DIV>
<DIV> </DIV>
<DIV>msc: for e+ SubType= 10</DIV>
<DIV> RangeFactor= 0.04, stepLimitType: 1,
latDisplacement: 1</DIV>
<DIV> ===== EM models for the G4Region
DefaultRegionForTheWorld ======</DIV>
<DIV> UrbanMsc
: Emin= 0 eV
Emax= 10 TeV Table with 77 bins
Emin= 100 eV Emax=
10 TeV</DIV>
<DIV> </DIV>
<DIV>ElectronIonisation: for e+ SubType=
2</DIV>
<DIV> dE/dx and range tables from 100 eV to
10 TeV in 77 bins</DIV>
<DIV> Lambda tables from threshold to 10 TeV, 7
bins per decade, spline: 1</DIV>
<DIV> finalRange(mm)= 1, dRoverRange= 0.2,
integral: 1, fluct: 1, linLossLimit= 0.01</DIV>
<DIV> ===== EM models for the G4Region
DefaultRegionForTheWorld ======</DIV>
<DIV> MollerBhabha :
Emin= 0 eV
Emax= 10 TeV</DIV>
<DIV> </DIV>
<DIV>Bremsstrahlung: for e+ SubType= 3</DIV>
<DIV> dE/dx and range tables from 100 eV to
10 TeV in 77 bins</DIV>
<DIV> Lambda tables from threshold to 10 TeV, 7
bins per decade, spline: 1</DIV>
<DIV> LPM flag: 1 for E > 1 GeV</DIV>
<DIV> ===== EM models for the G4Region
DefaultRegionForTheWorld ======</DIV>
<DIV>
eBremSB : Emin= 0
eV Emax= 1
GeV DipBustGen</DIV>
<DIV> eBremLPM
: Emin= 1 GeV
Emax= 10 TeV DipBustGen</DIV>
<DIV> </DIV>
<DIV>annihil: for e+, integral: 1 , applyCuts:
1 SubType= 5 BuildTable= 0</DIV>
<DIV> ===== EM models for the G4Region
DefaultRegionForTheWorld ======</DIV>
<DIV> eplus2gg
: Emin= 0 eV
Emax= 10 TeV</DIV>
<DIV>-------------- next part --------------</DIV>
<DIV>/vis/disable</DIV>
<DIV> </DIV>
<DIV>/gate/output/verbose 2</DIV>
<DIV> </DIV>
<DIV># MATERIALS</DIV>
<DIV>/gate/geometry/setMaterialDatabase
/gs/project/bnq-630-aa/martin/SIMU_PET/test/GateMaterials.db</DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV>## SCANNER GEOMETRY</DIV>
<DIV> </DIV>
<DIV># WORLD</DIV>
<DIV>/gate/world/geometry/setXLength 3.000000 mm</DIV>
<DIV>/gate/world/geometry/setYLength 3.000000 mm</DIV>
<DIV>/gate/world/geometry/setZLength 3.000000 mm</DIV>
<DIV>/gate/world/setMaterial Air</DIV>
<DIV> </DIV>
<DIV># SYSTEM</DIV>
<DIV>/gate/world/daughters/name cylindricalPET</DIV>
<DIV>/gate/world/daughters/insert cylinder</DIV>
<DIV>/gate/cylindricalPET/geometry/setRmin 443.000000 mm</DIV>
<DIV>/gate/cylindricalPET/geometry/setRmax 503.000000 mm</DIV>
<DIV>/gate/cylindricalPET/geometry/setHeight 157.000800 mm</DIV>
<DIV>/gate/cylindricalPET/setMaterial Air</DIV>
<DIV>/gate/cylindricalPET/vis/forceWireframe</DIV>
<DIV> </DIV>
<DIV># RSECTOR</DIV>
<DIV>/gate/cylindricalPET/daughters/name RSECTOR</DIV>
<DIV>/gate/cylindricalPET/daughters/insert box</DIV>
<DIV>/gate/RSECTOR/placement/setTranslation 458.000000 0 0 mm</DIV>
<DIV>/gate/RSECTOR/geometry/setXLength 30.000000 mm</DIV>
<DIV>/gate/RSECTOR/geometry/setYLength 78.258700 mm</DIV>
<DIV>/gate/RSECTOR/geometry/setZLength 157.000800 mm</DIV>
<DIV>/gate/RSECTOR/setMaterial Glass</DIV>
<DIV>/gate/RSECTOR/vis/forceWireframe</DIV>
<DIV>/gate/systems/cylindricalPET/rsector/attach RSECTOR</DIV>
<DIV> </DIV>
<DIV># MODULE</DIV>
<DIV>/gate/RSECTOR/daughters/name MODULE</DIV>
<DIV>/gate/RSECTOR/daughters/insert box</DIV>
<DIV>/gate/MODULE/geometry/setXLength 30.000000 mm</DIV>
<DIV>/gate/MODULE/geometry/setYLength 39.008500 mm</DIV>
<DIV>/gate/MODULE/geometry/setZLength 39.008500 mm</DIV>
<DIV>/gate/MODULE/setMaterial PTFE</DIV>
<DIV>/gate/MODULE/vis/forceWireframe</DIV>
<DIV>/gate/systems/cylindricalPET/module/attach MODULE</DIV>
<DIV> </DIV>
<DIV># CRYSTAL</DIV>
<DIV>/gate/MODULE/daughters/name CRYSTAL</DIV>
<DIV>/gate/MODULE/daughters/insert box</DIV>
<DIV>/gate/CRYSTAL/geometry/setXLength 30.000000 mm</DIV>
<DIV>/gate/CRYSTAL/geometry/setYLength 6.300000 mm</DIV>
<DIV>/gate/CRYSTAL/geometry/setZLength 6.300000 mm</DIV>
<DIV>/gate/CRYSTAL/setMaterial BGO</DIV>
<DIV>/gate/CRYSTAL/vis/forceWireframe</DIV>
<DIV>/gate/systems/cylindricalPET/crystal/attach CRYSTAL</DIV>
<DIV> </DIV>
<DIV># REPEAT CRYSTAL</DIV>
<DIV>/gate/CRYSTAL/repeaters/insert cubicArray</DIV>
<DIV>/gate/CRYSTAL/cubicArray/setRepeatNumberX 1</DIV>
<DIV>/gate/CRYSTAL/cubicArray/setRepeatNumberY 6</DIV>
<DIV>/gate/CRYSTAL/cubicArray/setRepeatNumberZ 6</DIV>
<DIV>/gate/CRYSTAL/cubicArray/setRepeatVector 0. 6.541700 6.541700 mm</DIV>
<DIV> </DIV>
<DIV># REPEAT MODULE</DIV>
<DIV>/gate/MODULE/repeaters/insert cubicArray</DIV>
<DIV>/gate/MODULE/cubicArray/setRepeatNumberX 1</DIV>
<DIV>/gate/MODULE/cubicArray/setRepeatNumberY 2</DIV>
<DIV>/gate/MODULE/cubicArray/setRepeatNumberZ 4</DIV>
<DIV>/gate/MODULE/cubicArray/setRepeatVector 0. 39.250200 39.250200 mm</DIV>
<DIV> </DIV>
<DIV># REPEAT RSECTOR</DIV>
<DIV>/gate/RSECTOR/repeaters/insert ring</DIV>
<DIV>/gate/RSECTOR/ring/setRepeatNumber 35</DIV>
<DIV> </DIV>
<DIV># ATTACH CRYSTAL SD</DIV>
<DIV>/gate/CRYSTAL/attachCrystalSD</DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV>## PHANTOM GEOMETRY: CT VOLUME</DIV>
<DIV> </DIV>
<DIV>/gate/geometry/setMaterialDatabase
/gs/project/bnq-630-aa/martin/SIMU_PET/test/patient-HUmaterials.db</DIV>
<DIV>/gate/world/daughters/name voxelizedPhantom</DIV>
<DIV>/gate/world/daughters/insert ImageRegularParametrisedVolume</DIV>
<DIV>/gate/voxelizedPhantom/geometry/setImage
/gs/project/bnq-630-aa/martin/SIMU_PET/test/simuPhantom.h33</DIV>
<DIV>/gate/voxelizedPhantom/geometry/setHUToMaterialFile
/gs/project/bnq-630-aa/martin/SIMU_PET/test/patient-HU2mat.txt</DIV>
<DIV>/gate/voxelizedPhantom/setSkipEqualMaterials 0</DIV>
<DIV>/gate/voxelizedPhantom/placement/setTranslation 0.000000 -0.000000 0.000000
mm</DIV>
<DIV>/gate/voxelizedPhantom/attachPhantomSD</DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV>## PHYSICS</DIV>
<DIV> </DIV>
<DIV>/gate/physics/addProcess PhotoElectric</DIV>
<DIV>/gate/physics/processes/PhotoElectric/setModel StandardModel</DIV>
<DIV> </DIV>
<DIV>/gate/physics/addProcess Compton</DIV>
<DIV>/gate/physics/processes/Compton/setModel StandardModel</DIV>
<DIV> </DIV>
<DIV>/gate/physics/addProcess RayleighScattering</DIV>
<DIV>/gate/physics/processes/RayleighScattering/setModel PenelopeModel</DIV>
<DIV> </DIV>
<DIV>/gate/physics/addProcess ElectronIonisation</DIV>
<DIV>/gate/physics/processes/ElectronIonisation/setModel StandardModel e-</DIV>
<DIV>/gate/physics/processes/ElectronIonisation/setModel StandardModel e+</DIV>
<DIV> </DIV>
<DIV>/gate/physics/addProcess Bremsstrahlung</DIV>
<DIV>/gate/physics/processes/Bremsstrahlung/setModel StandardModel e-</DIV>
<DIV>/gate/physics/processes/Bremsstrahlung/setModel StandardModel e+</DIV>
<DIV> </DIV>
<DIV>/gate/physics/addProcess PositronAnnihilation</DIV>
<DIV> </DIV>
<DIV>/gate/physics/addProcess eMultipleScattering e+</DIV>
<DIV>/gate/physics/addProcess eMultipleScattering e-</DIV>
<DIV> </DIV>
<DIV>/gate/physics/processList Enabled</DIV>
<DIV>/gate/physics/processList Initialized</DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV>## INITIALIZATION</DIV>
<DIV> </DIV>
<DIV>/gate/run/initialize</DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV>## DIGITIZERS</DIV>
<DIV> </DIV>
<DIV>/gate/digitizer/Singles/insert
adder</DIV>
<DIV>/gate/digitizer/Singles/insert
readout</DIV>
<DIV>/gate/digitizer/Singles/readout/setDepth
2</DIV>
<DIV>/gate/digitizer/Singles/insert
blurring</DIV>
<DIV>/gate/digitizer/Singles/blurring/setResolution
0.150000</DIV>
<DIV>/gate/digitizer/Singles/blurring/setEnergyOfReference 511.000000
keV</DIV>
<DIV>/gate/digitizer/Singles/insert
thresholder</DIV>
<DIV>/gate/digitizer/Singles/thresholder/setThreshold
350.000000 keV</DIV>
<DIV>/gate/digitizer/Singles/insert
upholder</DIV>
<DIV>/gate/digitizer/Singles/upholder/setUphold
650.000000 keV</DIV>
<DIV> </DIV>
<DIV>/gate/digitizer/Coincidences/setWindow
10.000000 ns</DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV>## SOURCE</DIV>
<DIV> </DIV>
<DIV>/gate/source/addSource voxelizedSource voxel</DIV>
<DIV> </DIV>
<DIV>/gate/source/voxelizedSource/reader/insert interfile</DIV>
<DIV>/gate/source/voxelizedSource/interfileReader/translator/insert linear</DIV>
<DIV>/gate/source/voxelizedSource/interfileReader/linearTranslator/setScale 1
Bq</DIV>
<DIV>/gate/source/voxelizedSource/interfileReader/readFile
/gs/project/bnq-630-aa/martin/SIMU_PET/test/simuSource.h33</DIV>
<DIV>/gate/source/voxelizedSource/setPosition -43.750000 -185.937500 -76.845000
mm</DIV>
<DIV> </DIV>
<DIV>/gate/source/voxelizedSource/gps/particle e+</DIV>
<DIV>/gate/source/voxelizedSource/gps/energytype Fluor18</DIV>
<DIV>/gate/source/voxelizedSource/setForcedUnstableFlag true</DIV>
<DIV>/gate/source/voxelizedSource/setForcedHalfLife 6586.2 s</DIV>
<DIV>/gate/source/voxelizedSource/gps/angtype iso</DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV>## OUTPUTS</DIV>
<DIV> </DIV>
<DIV># BINARY OUTPUT FORMAT</DIV>
<DIV>/gate/output/root/enable</DIV>
<DIV>/gate/output/root/setFileName
/gs/project/bnq-630-aa/martin/SIMU_PET/test/simu{simNumber}</DIV>
<DIV>/gate/output/root/setRootHitFlag 0</DIV>
<DIV>/gate/output/root/setRootSinglesFlag 0</DIV>
<DIV>/gate/output/root/setRootCoincidencesFlag 1</DIV>
<DIV> </DIV>
<DIV> </DIV>
<DIV>## EXPERIMENT</DIV>
<DIV> </DIV>
<DIV># SIMULATION TIME</DIV>
<DIV> </DIV>
<DIV>/gate/application/setTimeSlice {simTimeSlice} s</DIV>
<DIV>/gate/application/setTimeStart {simTimeStart} s</DIV>
<DIV>/gate/application/setTimeStop {simTimeStop} s</DIV>
<DIV> </DIV>
<DIV># RANDOM GENERATOR</DIV>
<DIV> </DIV>
<DIV>/gate/random/setEngineName MersenneTwister</DIV>
<DIV>/gate/random/setEngineSeed {seed}</DIV>
<DIV> </DIV>
<DIV># START ACQUISITION</DIV>
<DIV>/gate/application/startDAQ</DIV>
<DIV> </DIV>
<DIV>exit</DIV>
<DIV> </DIV>
<DIV>------------------------------</DIV>
<DIV> </DIV>
<DIV>_______________________________________________</DIV>
<DIV>Gate-users mailing list</DIV>
<DIV>Gate-users@lists.opengatecollaboration.org</DIV>
<DIV>http://lists.opengatecollaboration.org/mailman/listinfo/gate-users</DIV>
<DIV> </DIV>
<DIV>End of Gate-users Digest, Vol 116, Issue 24</DIV>
<DIV>*******************************************</DIV></DIV></BODY></HTML>